No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1213 |
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc36I | ACCTGC | 1 cut(s) | 1213 |
| AccB1I | GGYRCC | 4 cut(s) | 261, 1006, 1997, 2033 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 2043 |
| AccBSI | CCGCTC | 3 cut(s) | 992, 1600, 1753 |
| AccII | CGCG | 8 cut(s) | 62, 357, 382, 720, 814, 1041, 1141, 1218 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AclWI | GGATC | 2 cut(s) | 49, 332 |
| AcoI | YGGCCR | 4 cut(s) | 350, 358, 1926, 2004 |
| AcsI | RAATTY | 1 cut(s) | 73 |
| AcuI | CTGAAG | 7 cut(s) | 66, 290, 399, 1133, 1346, 1520, 1823 |
| AcyI | GRCGYC | 4 cut(s) | 9, 1007, 1194, 1710 |
| AdeI | CACNNNGTG | 1 cut(s) | 783 |
| AfeI | AGCGCT | 1 cut(s) | 531 |
| AflIII | ACRYGT | 2 cut(s) | 812, 1785 |
| AgsI | TTSAA | 4 cut(s) | 1116, 1832, 1873, 2135 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 562, 2271 |
| AhlI | ACTAGT | 1 cut(s) | 401 |
| AjnI | CCWGG | 8 cut(s) | 486, 612, 897, 1374, 1548, 1650, 2229, 2244 |
| AleI | CACNNNNGTG | 1 cut(s) | 1142 |
| Alw21I | GWGCWC | 1 cut(s) | 1608 |
| Alw26I | GTCTC | 5 cut(s) | 776, 818, 947, 1421, 2258 |
| AlwI | GGATC | 2 cut(s) | 49, 332 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1130 |
| Ama87I | CYCGRG | 3 cut(s) | 1250, 1424, 2283 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| Aor51HI | AGCGCT | 1 cut(s) | 531 |
| ApaI | GGGCCC | 1 cut(s) | 1216 |
| ApeKI | GCWGC | 5 cut(s) | 215, 248, 1917, 1985, 2020 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1836 |
| AspLEI | GCGC | 9 cut(s) | 62, 248, 486, 532, 881, 964, 1009, 1027, 1041 |
| AsuC2I | CCSGG | 8 cut(s) | 292, 681, 781, 919, 1210, 1748, 2124, 2174 |
| AsuHPI | GGTGA | 8 cut(s) | 311, 769, 1006, 1072, 1237, 1337, 1511, 1898 |
| AsuNHI | GCTAGC | 1 cut(s) | 2074 |
| AvaI | CYCGRG | 3 cut(s) | 1250, 1424, 2283 |
| AvaII | GGWCC | 8 cut(s) | 434, 621, 677, 946, 984, 1744, 2126, 2289 |
| BaeGI | GKGCMC | 2 cut(s) | 409, 1216 |
| BalI | TGGCCA | 2 cut(s) | 352, 2006 |
| BanI | GGYRCC | 4 cut(s) | 261, 1006, 1997, 2033 |
| BanII | GRGCYC | 2 cut(s) | 1216, 1608 |
| BauI | CACGAG | 1 cut(s) | 702 |
| Bbv12I | GWGCWC | 1 cut(s) | 1608 |
| BbvI | GCAGC | 5 cut(s) | 202, 260, 1904, 1997, 2007 |
| BccI | CCATC | 2 cut(s) | 677, 2381 |
| BceAI | ACGGC | 6 cut(s) | 275, 803, 834, 954, 1181, 2207 |
| BciT130I | CCWGG | 8 cut(s) | 488, 614, 899, 1376, 1550, 1652, 2231, 2246 |
| BcnI | CCSGG | 8 cut(s) | 292, 681, 781, 919, 1210, 1748, 2124, 2174 |
| BcoDI | GTCTC | 5 cut(s) | 776, 818, 947, 1421, 2258 |
| BcuI | ACTAGT | 1 cut(s) | 401 |
| BfaI | CTAG | 5 cut(s) | 131, 201, 402, 2075, 2271 |
| BfmI | CTRYAG | 3 cut(s) | 146, 1122, 1628 |
| BfoI | RGCGCY | 5 cut(s) | 487, 533, 965, 1010, 1028 |
| BfuAI | ACCTGC | 1 cut(s) | 1213 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1862 |
| BmcAI | AGTACT | 1 cut(s) | 2104 |
| Bme18I | GGWCC | 8 cut(s) | 434, 621, 677, 946, 984, 1744, 2126, 2289 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 562, 2271 |
| BmeT110I | CYCGRG | 3 cut(s) | 1250, 1424, 2283 |
| BmrI | ACTGGG | 1 cut(s) | 2053 |
| BmsI | GCATC | 4 cut(s) | 1690, 2049, 2063, 2326 |
| BmtI | GCTAGC | 1 cut(s) | 2078 |
| BmuI | ACTGGG | 1 cut(s) | 2053 |
| BoxI | GACNNNNGTC | 1 cut(s) | 768 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 318, 350 |
| BpmI | CTGGAG | 3 cut(s) | 920, 1397, 1571 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1607, 1815 |
| BpuEI | CTTGAG | 1 cut(s) | 518 |
| BpuMI | CCSGG | 8 cut(s) | 292, 681, 781, 919, 1210, 1748, 2124, 2174 |
| Bsa29I | ATCGAT | 1 cut(s) | 2057 |
| BsaAI | YACGTR | 1 cut(s) | 478 |
| BsaHI | GRCGYC | 4 cut(s) | 9, 1007, 1194, 1710 |
| BsaI | GGTCTC | 1 cut(s) | 2258 |
| BsaWI | WCCGGW | 4 cut(s) | 38, 282, 986, 2128 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 893, 923, 1325, 1355, 1499, 1529 |
| Bse118I | RCCGGY | 5 cut(s) | 264, 1027, 1994, 2062, 2327 |
| Bse1I | ACTGG | 3 cut(s) | 102, 575, 2048 |
| Bse3DI | GCAATG | 2 cut(s) | 876, 1980 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 8 cut(s) | 488, 614, 899, 1376, 1550, 1652, 2231, 2246 |
| BseCI | ATCGAT | 1 cut(s) | 2057 |
| BseGI | GGATG | 4 cut(s) | 669, 2257, 2311, 2373 |
| BseMI | GCAATG | 2 cut(s) | 876, 1980 |
| BseMII | CTCAG | 6 cut(s) | 526, 542, 956, 1621, 1892, 2201 |
| BseNI | ACTGG | 3 cut(s) | 102, 575, 2048 |
| BseRI | GAGGAG | 4 cut(s) | 339, 764, 1202, 1628 |
| BseSI | GKGCMC | 2 cut(s) | 409, 1216 |
| BseX3I | CGGCCG | 1 cut(s) | 1926 |
| BseXI | GCAGC | 5 cut(s) | 202, 260, 1904, 1997, 2007 |
| BsgI | GTGCAG | 3 cut(s) | 126, 950, 1067 |
| Bsh1236I | CGCG | 8 cut(s) | 62, 357, 382, 720, 814, 1041, 1141, 1218 |
| Bsh1285I | CGRYCG | 2 cut(s) | 441, 1929 |
| BshNI | GGYRCC | 4 cut(s) | 261, 1006, 1997, 2033 |
| BshVI | ATCGAT | 1 cut(s) | 2057 |
| BsiEI | CGRYCG | 2 cut(s) | 441, 1929 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1608 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1250, 1424, 2283 |
| BslFI | GGGAC | 6 cut(s) | 569, 997, 1649, 1757, 1774, 2259 |
| BsmAI | GTCTC | 5 cut(s) | 776, 818, 947, 1421, 2258 |
| BsmBI | CGTCTC | 2 cut(s) | 776, 947 |
| BsmFI | GGGAC | 6 cut(s) | 569, 997, 1649, 1757, 1774, 2259 |
| Bso31I | GGTCTC | 1 cut(s) | 2258 |
| BsoBI | CYCGRG | 3 cut(s) | 1250, 1424, 2283 |
| Bsp120I | GGGCCC | 1 cut(s) | 1212 |
| Bsp1286I | GDGCHC | 3 cut(s) | 409, 1216, 1608 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp143I | GATC | 5 cut(s) | 41, 337, 540, 1291, 1465 |
| Bsp19I | CCATGG | 1 cut(s) | 2001 |
| BspCNI | CTCAG | 6 cut(s) | 525, 543, 957, 1620, 1893, 2200 |
| BspDI | ATCGAT | 1 cut(s) | 2057 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspFNI | CGCG | 8 cut(s) | 62, 357, 382, 720, 814, 1041, 1141, 1218 |
| BspMAI | CTGCAG | 1 cut(s) | 1126 |
| BspMI | ACCTGC | 1 cut(s) | 1213 |
| BspOI | GCTAGC | 1 cut(s) | 2078 |
| BspPI | GGATC | 2 cut(s) | 49, 332 |
| BspT107I | GGYRCC | 4 cut(s) | 261, 1006, 1997, 2033 |
| BspTNI | GGTCTC | 1 cut(s) | 2258 |
| BsrBI | CCGCTC | 3 cut(s) | 992, 1600, 1753 |
| BsrDI | GCAATG | 2 cut(s) | 876, 1980 |
| BsrFI | RCCGGY | 5 cut(s) | 264, 1027, 1994, 2062, 2327 |
| BsrI | ACTGG | 3 cut(s) | 102, 575, 2048 |
| BssAI | RCCGGY | 5 cut(s) | 264, 1027, 1994, 2062, 2327 |
| BssMI | GATC | 5 cut(s) | 41, 337, 540, 1291, 1465 |
| BssNI | GRCGYC | 4 cut(s) | 9, 1007, 1194, 1710 |
| BssSI | CACGAG | 1 cut(s) | 702 |
| BssT1I | CCWWGG | 2 cut(s) | 594, 2001 |
| Bst2BI | CACGAG | 1 cut(s) | 702 |
| Bst2UI | CCWGG | 8 cut(s) | 488, 614, 899, 1376, 1550, 1652, 2231, 2246 |
| Bst4CI | ACNGT | 5 cut(s) | 320, 442, 1399, 1764, 1878 |
| Bst6I | CTCTTC | 3 cut(s) | 266, 705, 1179 |
| BstACI | GRCGYC | 4 cut(s) | 9, 1007, 1194, 1710 |
| BstBAI | YACGTR | 1 cut(s) | 478 |
| BstDEI | CTNAG | 8 cut(s) | 232, 512, 551, 965, 1607, 1815, 1901, 2187 |
| BstDSI | CCRYGG | 4 cut(s) | 441, 1010, 1197, 2001 |
| BstF5I | GGATG | 4 cut(s) | 669, 2257, 2311, 2373 |
| BstFNI | CGCG | 8 cut(s) | 62, 357, 382, 720, 814, 1041, 1141, 1218 |
| BstH2I | RGCGCY | 5 cut(s) | 487, 533, 965, 1010, 1028 |
| BstHHI | GCGC | 9 cut(s) | 62, 248, 486, 532, 881, 964, 1009, 1027, 1041 |
| BstKTI | GATC | 5 cut(s) | 44, 340, 543, 1294, 1468 |
| BstMAI | GTCTC | 5 cut(s) | 776, 818, 947, 1421, 2258 |
| BstMBI | GATC | 5 cut(s) | 41, 337, 540, 1291, 1465 |
| BstMCI | CGRYCG | 2 cut(s) | 441, 1929 |
| BstNI | CCWGG | 8 cut(s) | 488, 614, 899, 1376, 1550, 1652, 2231, 2246 |
| BstNSI | RCATGY | 1 cut(s) | 1789 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 768 |
| BstSFI | CTRYAG | 3 cut(s) | 146, 1122, 1628 |
| BstSLI | GKGCMC | 2 cut(s) | 409, 1216 |
| BstUI | CGCG | 8 cut(s) | 62, 357, 382, 720, 814, 1041, 1141, 1218 |
| BstV1I | GCAGC | 5 cut(s) | 202, 260, 1904, 1997, 2007 |
| BstX2I | RGATCY | 1 cut(s) | 41 |
| BstYI | RGATCY | 1 cut(s) | 41 |
| BstZI | CGGCCG | 1 cut(s) | 1926 |
| Bsu15I | ATCGAT | 1 cut(s) | 2057 |
| BsuTUI | ATCGAT | 1 cut(s) | 2057 |
| BtgI | CCRYGG | 4 cut(s) | 441, 1010, 1197, 2001 |
| BtsCI | GGATG | 4 cut(s) | 669, 2257, 2311, 2373 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 1065 |
| BtsIMutI | CAGTG | 4 cut(s) | 34, 109, 116, 1065 |
| BveI | ACCTGC | 1 cut(s) | 1213 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1130 |
| CciNI | GCGGCCGC | 1 cut(s) | 1926 |
| CfoI | GCGC | 9 cut(s) | 62, 248, 486, 532, 881, 964, 1009, 1027, 1041 |
| Cfr10I | RCCGGY | 5 cut(s) | 264, 1027, 1994, 2062, 2327 |
| ClaI | ATCGAT | 1 cut(s) | 2057 |
| CpoI | CGGWCCG | 1 cut(s) | 2126 |
| CseI | GACGC | 9 cut(s) | 80, 176, 820, 863, 964, 1052, 1202, 1686, 1718 |
| CspI | CGGWCCG | 1 cut(s) | 2126 |
| CviAII | CATG | 6 cut(s) | 362, 907, 1033, 1786, 2002, 2068 |
| DdeI | CTNAG | 8 cut(s) | 232, 512, 551, 965, 1607, 1815, 1901, 2187 |
| DinI | GGCGCC | 1 cut(s) | 1008 |
| DpnI | GATC | 5 cut(s) | 43, 339, 542, 1293, 1467 |
| DpnII | GATC | 5 cut(s) | 41, 337, 540, 1291, 1465 |
| DraIII | CACNNNGTG | 1 cut(s) | 783 |
| DriI | GACNNNNNGTC | 2 cut(s) | 562, 2271 |
| EaeI | YGGCCR | 4 cut(s) | 350, 358, 1926, 2004 |
| EagI | CGGCCG | 1 cut(s) | 1926 |
| Eam1104I | CTCTTC | 3 cut(s) | 266, 705, 1179 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 562, 2271 |
| EarI | CTCTTC | 3 cut(s) | 266, 705, 1179 |
| Ecl136II | GAGCTC | 1 cut(s) | 1606 |
| EclXI | CGGCCG | 1 cut(s) | 1926 |
| Eco130I | CCWWGG | 2 cut(s) | 594, 2001 |
| Eco147I | AGGCCT | 2 cut(s) | 333, 1120 |
| Eco24I | GRGCYC | 2 cut(s) | 1216, 1608 |
| Eco31I | GGTCTC | 1 cut(s) | 2258 |
| Eco47I | GGWCC | 8 cut(s) | 434, 621, 677, 946, 984, 1744, 2126, 2289 |
| Eco47III | AGCGCT | 1 cut(s) | 531 |
| Eco52I | CGGCCG | 1 cut(s) | 1926 |
| Eco53kI | GAGCTC | 1 cut(s) | 1606 |
| Eco57I | CTGAAG | 7 cut(s) | 66, 290, 399, 1133, 1346, 1520, 1823 |
| Eco88I | CYCGRG | 3 cut(s) | 1250, 1424, 2283 |
| EcoICRI | GAGCTC | 1 cut(s) | 1606 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1212 |
| EcoRII | CCWGG | 8 cut(s) | 486, 612, 897, 1374, 1548, 1650, 2229, 2244 |
| EcoT14I | CCWWGG | 2 cut(s) | 594, 2001 |
| EcoT38I | GRGCYC | 2 cut(s) | 1216, 1608 |
| EgeI | GGCGCC | 1 cut(s) | 1008 |
| EheI | GGCGCC | 1 cut(s) | 1008 |
| ErhI | CCWWGG | 2 cut(s) | 594, 2001 |
| Esp3I | CGTCTC | 2 cut(s) | 776, 947 |
| FaeI | CATG | 6 cut(s) | 365, 910, 1036, 1789, 2005, 2071 |
| FaqI | GGGAC | 6 cut(s) | 569, 997, 1649, 1757, 1774, 2259 |
| FatI | CATG | 6 cut(s) | 361, 906, 1032, 1785, 2001, 2067 |
| FokI | GGATG | 4 cut(s) | 656, 2264, 2298, 2360 |
| FriOI | GRGCYC | 2 cut(s) | 1216, 1608 |
| FspBI | CTAG | 5 cut(s) | 131, 201, 402, 2075, 2271 |
| GlaI | GCGC | 9 cut(s) | 61, 247, 485, 531, 880, 963, 1008, 1026, 1040 |
| GsuI | CTGGAG | 3 cut(s) | 920, 1397, 1571 |
| HaeII | RGCGCY | 5 cut(s) | 487, 533, 965, 1010, 1028 |
| HgaI | GACGC | 9 cut(s) | 80, 176, 820, 863, 964, 1052, 1202, 1686, 1718 |
| HhaI | GCGC | 9 cut(s) | 62, 248, 486, 532, 881, 964, 1009, 1027, 1041 |
| Hin1I | GRCGYC | 4 cut(s) | 9, 1007, 1194, 1710 |
| Hin1II | CATG | 6 cut(s) | 365, 910, 1036, 1789, 2005, 2071 |
| Hin6I | GCGC | 9 cut(s) | 60, 246, 484, 530, 879, 962, 1007, 1025, 1039 |
| HinP1I | GCGC | 9 cut(s) | 60, 246, 484, 530, 879, 962, 1007, 1025, 1039 |
| HphI | GGTGA | 8 cut(s) | 311, 769, 1006, 1072, 1237, 1337, 1511, 1898 |
| Hpy166II | GTNNAC | 4 cut(s) | 475, 508, 946, 1810 |
| Hpy188III | TCNNGA | 7 cut(s) | 39, 191, 521, 544, 704, 1295, 1469 |
| Hpy8I | GTNNAC | 4 cut(s) | 475, 508, 946, 1810 |
| Hpy99I | CGWCG | 2 cut(s) | 522, 1680 |
| HpyCH4III | ACNGT | 5 cut(s) | 320, 442, 1399, 1764, 1878 |
| HpyCH4IV | ACGT | 2 cut(s) | 9, 477 |
| HpyCH4V | TGCA | 9 cut(s) | 107, 365, 495, 931, 1048, 1124, 1353, 1527, 2023 |
| HpyF3I | CTNAG | 8 cut(s) | 232, 512, 551, 965, 1607, 1815, 1901, 2187 |
| HpySE526I | ACGT | 2 cut(s) | 9, 477 |
| Hsp92I | GRCGYC | 4 cut(s) | 9, 1007, 1194, 1710 |
| Hsp92II | CATG | 6 cut(s) | 365, 910, 1036, 1789, 2005, 2071 |
| HspAI | GCGC | 9 cut(s) | 60, 246, 484, 530, 879, 962, 1007, 1025, 1039 |
| KasI | GGCGCC | 1 cut(s) | 1006 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| Kzo9I | GATC | 5 cut(s) | 41, 337, 540, 1291, 1465 |
| Lsp1109I | GCAGC | 5 cut(s) | 202, 260, 1904, 1997, 2007 |
| LweI | GCATC | 4 cut(s) | 1690, 2049, 2063, 2326 |
| MaeI | CTAG | 5 cut(s) | 131, 201, 402, 2075, 2271 |
| MaeII | ACGT | 2 cut(s) | 9, 477 |
| MaeIII | GTNAC | 3 cut(s) | 389, 851, 1078 |
| MalI | GATC | 5 cut(s) | 43, 339, 542, 1293, 1467 |
| MbiI | CCGCTC | 3 cut(s) | 992, 1600, 1753 |
| MboI | GATC | 5 cut(s) | 41, 337, 540, 1291, 1465 |
| MboII | GAAGA | 7 cut(s) | 283, 722, 1063, 1196, 1240, 1414, 2092 |
| MflI | RGATCY | 1 cut(s) | 41 |
| MhlI | GDGCHC | 3 cut(s) | 409, 1216, 1608 |
| MlsI | TGGCCA | 2 cut(s) | 352, 2006 |
| MluCI | AATT | 2 cut(s) | 73, 648 |
| MluI | ACGCGT | 1 cut(s) | 812 |
| MluNI | TGGCCA | 2 cut(s) | 352, 2006 |
| Mly113I | GGCGCC | 1 cut(s) | 1007 |
| MlyI | GAGTC | 9 cut(s) | 551, 820, 976, 1292, 1423, 1466, 1949, 2163, 2188 |
| MmeI | TCCRAC | 6 cut(s) | 636, 648, 1074, 1755, 1860, 2316 |
| Mox20I | TGGCCA | 2 cut(s) | 352, 2006 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1836 |
| MscI | TGGCCA | 2 cut(s) | 352, 2006 |
| MseI | TTAA | 1 cut(s) | 651 |
| MslI | CAYNNNNRTG | 3 cut(s) | 170, 1142, 2031 |
| Msp20I | TGGCCA | 2 cut(s) | 352, 2006 |
| MspA1I | CMGCKG | 5 cut(s) | 221, 348, 1179, 1843, 2191 |
| MvaI | CCWGG | 8 cut(s) | 488, 614, 899, 1376, 1550, 1652, 2231, 2246 |
| MvnI | CGCG | 8 cut(s) | 62, 357, 382, 720, 814, 1041, 1141, 1218 |
| NarI | GGCGCC | 1 cut(s) | 1007 |
| NciI | CCSGG | 8 cut(s) | 292, 681, 781, 919, 1210, 1748, 2124, 2174 |
| NcoI | CCATGG | 1 cut(s) | 2001 |
| NdeII | GATC | 5 cut(s) | 41, 337, 540, 1291, 1465 |
| NheI | GCTAGC | 1 cut(s) | 2074 |
| NlaIII | CATG | 6 cut(s) | 365, 910, 1036, 1789, 2005, 2071 |
| NmeAIII | GCCGAG | 5 cut(s) | 858, 1342, 1516, 1891, 1933 |
| NmuCI | GTSAC | 3 cut(s) | 389, 851, 1078 |
| NotI | GCGGCCGC | 1 cut(s) | 1926 |
| NspI | RCATGY | 1 cut(s) | 1789 |
| OliI | CACNNNNGTG | 1 cut(s) | 1142 |
| PaqCI | CACCTGC | 1 cut(s) | 1213 |
| PceI | AGGCCT | 2 cut(s) | 333, 1120 |
| PciI | ACATGT | 1 cut(s) | 1785 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1836 |
| PfeI | GAWTC | 5 cut(s) | 35, 547, 748, 1172, 1847 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 2043 |
| PfoI | TCCNGGA | 2 cut(s) | 897, 2172 |
| PleI | GAGTC | 9 cut(s) | 551, 820, 975, 1292, 1423, 1466, 1948, 2163, 2188 |
| PluTI | GGCGCC | 1 cut(s) | 1010 |
| PpsI | GAGTC | 9 cut(s) | 551, 820, 975, 1292, 1423, 1466, 1948, 2163, 2188 |
| Ppu21I | YACGTR | 1 cut(s) | 478 |
| PscI | ACATGT | 1 cut(s) | 1785 |
| PshAI | GACNNNNGTC | 1 cut(s) | 768 |
| Psp124BI | GAGCTC | 1 cut(s) | 1608 |
| Psp6I | CCWGG | 8 cut(s) | 486, 612, 897, 1374, 1548, 1650, 2229, 2244 |
| PspGI | CCWGG | 8 cut(s) | 486, 612, 897, 1374, 1548, 1650, 2229, 2244 |
| PspOMI | GGGCCC | 1 cut(s) | 1212 |
| PstI | CTGCAG | 1 cut(s) | 1126 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1130 |
| PsuI | RGATCY | 1 cut(s) | 41 |
| PvuII | CAGCTG | 1 cut(s) | 348 |
| RseI | CAYNNNNRTG | 3 cut(s) | 170, 1142, 2031 |
| Rsr2I | CGGWCCG | 1 cut(s) | 2126 |
| RsrII | CGGWCCG | 1 cut(s) | 2126 |
| SacI | GAGCTC | 1 cut(s) | 1608 |
| SaqAI | TTAA | 1 cut(s) | 651 |
| Sau3AI | GATC | 5 cut(s) | 41, 337, 540, 1291, 1465 |
| ScaI | AGTACT | 1 cut(s) | 2104 |
| SchI | GAGTC | 9 cut(s) | 551, 820, 976, 1292, 1423, 1466, 1949, 2163, 2188 |
| SduI | GDGCHC | 3 cut(s) | 409, 1216, 1608 |
| SfaNI | GCATC | 4 cut(s) | 1690, 2049, 2063, 2326 |
| SfcI | CTRYAG | 3 cut(s) | 146, 1122, 1628 |
| SfoI | GGCGCC | 1 cut(s) | 1008 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2327 |
| SinI | GGWCC | 8 cut(s) | 434, 621, 677, 946, 984, 1744, 2126, 2289 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 170, 1142, 2031 |
| SmlI | CTYRAG | 1 cut(s) | 533 |
| SmoI | CTYRAG | 1 cut(s) | 533 |
| SpeI | ACTAGT | 1 cut(s) | 401 |
| Sse9I | AATT | 2 cut(s) | 73, 648 |
| SseBI | AGGCCT | 2 cut(s) | 333, 1120 |
| SspDI | GGCGCC | 1 cut(s) | 1006 |
| SspMI | CTAG | 5 cut(s) | 131, 201, 402, 2075, 2271 |
| SstI | GAGCTC | 1 cut(s) | 1608 |
| StuI | AGGCCT | 2 cut(s) | 333, 1120 |
| StyI | CCWWGG | 2 cut(s) | 594, 2001 |
| TaaI | ACNGT | 5 cut(s) | 320, 442, 1399, 1764, 1878 |
| TaiI | ACGT | 2 cut(s) | 12, 480 |
| TaqI | TCGA | 7 cut(s) | 23, 138, 336, 543, 888, 1671, 2057 |
| TaqII | GACCGA | 3 cut(s) | 451, 1706, 1994 |
| TasI | AATT | 2 cut(s) | 73, 648 |
| TatI | WGTACW | 1 cut(s) | 2102 |
| TfiI | GAWTC | 5 cut(s) | 35, 547, 748, 1172, 1847 |
| Tru1I | TTAA | 1 cut(s) | 651 |
| Tru9I | TTAA | 1 cut(s) | 651 |
| TscAI | CASTG | 4 cut(s) | 34, 109, 123, 1065 |
| TseFI | GTSAC | 3 cut(s) | 389, 851, 1078 |
| TseI | GCWGC | 5 cut(s) | 215, 248, 1917, 1985, 2020 |
| Tsp45I | GTSAC | 3 cut(s) | 389, 851, 1078 |
| TspGWI | ACGGA | 4 cut(s) | 84, 270, 758, 1027 |
| TspRI | CASTG | 4 cut(s) | 34, 109, 123, 1065 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 2043 |
| VpaK11BI | GGWCC | 8 cut(s) | 434, 621, 677, 946, 984, 1744, 2126, 2289 |
| XapI | RAATTY | 1 cut(s) | 73 |
| XceI | RCATGY | 1 cut(s) | 1789 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1090 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1836 |
| XspI | CTAG | 5 cut(s) | 131, 201, 402, 2075, 2271 |
| ZraI | GACGTC | 1 cut(s) | 10 |
| ZrmI | AGTACT | 1 cut(s) | 2104 |