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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 126 |
| Acc36I | ACCTGC | 1 cut(s) | 126 |
| AccB1I | GGYRCC | 1 cut(s) | 290 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 36 |
| AccBSI | CCGCTC | 1 cut(s) | 49 |
| AccII | CGCG | 1 cut(s) | 245 |
| AccIII | TCCGGA | 1 cut(s) | 196 |
| AclWI | GGATC | 1 cut(s) | 105 |
| AcoI | YGGCCR | 1 cut(s) | 107 |
| AcsI | RAATTY | 2 cut(s) | 457, 509 |
| AcyI | GRCGYC | 1 cut(s) | 291 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 36, 94, 138, 139, 336, 348 |
| AgsI | TTSAA | 2 cut(s) | 35, 308 |
| AjiI | CACGTC | 1 cut(s) | 166 |
| AluBI | AGCT | 2 cut(s) | 421, 446 |
| AluI | AGCT | 2 cut(s) | 421, 446 |
| Alw21I | GWGCWC | 1 cut(s) | 356 |
| Alw26I | GTCTC | 2 cut(s) | 215, 473 |
| AlwI | GGATC | 1 cut(s) | 105 |
| Aor13HI | TCCGGA | 1 cut(s) | 196 |
| AoxI | GGCC | 3 cut(s) | 107, 285, 338 |
| ApoI | RAATTY | 2 cut(s) | 457, 509 |
| AspLEI | GCGC | 2 cut(s) | 247, 293 |
| AspS9I | GGNCC | 2 cut(s) | 129, 339 |
| AsuC2I | CCSGG | 2 cut(s) | 346, 497 |
| AsuHPI | GGTGA | 1 cut(s) | 55 |
| AvaII | GGWCC | 1 cut(s) | 129 |
| BalI | TGGCCA | 1 cut(s) | 109 |
| BanI | GGYRCC | 1 cut(s) | 290 |
| BanII | GRGCYC | 1 cut(s) | 329 |
| Bbv12I | GWGCWC | 1 cut(s) | 356 |
| BccI | CCATC | 2 cut(s) | 201, 338 |
| BceAI | ACGGC | 1 cut(s) | 4 |
| BcnI | CCSGG | 2 cut(s) | 346, 497 |
| BcoDI | GTCTC | 2 cut(s) | 215, 473 |
| BfoI | RGCGCY | 1 cut(s) | 294 |
| BfuAI | ACCTGC | 1 cut(s) | 126 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 346 |
| BisI | GCNGC | 2 cut(s) | 214, 279 |
| BlsI | GCNGC | 2 cut(s) | 215, 280 |
| Bme1390I | CCNGG | 2 cut(s) | 346, 497 |
| Bme18I | GGWCC | 1 cut(s) | 129 |
| BmgBI | CACGTC | 1 cut(s) | 166 |
| BmgT120I | GGNCC | 2 cut(s) | 129, 339 |
| BmiI | GGNNCC | 4 cut(s) | 131, 212, 292, 328 |
| BmrFI | CCNGG | 2 cut(s) | 346, 497 |
| BmsI | GCATC | 2 cut(s) | 133, 265 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 395, 427 |
| BpuMI | CCSGG | 2 cut(s) | 346, 497 |
| BsaHI | GRCGYC | 1 cut(s) | 291 |
| BsaI | GGTCTC | 1 cut(s) | 215 |
| BsaJI | CCNNGG | 3 cut(s) | 10, 110, 183 |
| BsaWI | WCCGGW | 2 cut(s) | 196, 356 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 36, 94, 138, 139, 336, 348 |
| Bse118I | RCCGGY | 3 cut(s) | 247, 287, 336 |
| BseAI | TCCGGA | 1 cut(s) | 196 |
| BseDI | CCNNGG | 3 cut(s) | 10, 110, 183 |
| BseGI | GGATG | 4 cut(s) | 10, 46, 148, 193 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 36, 94, 138, 139, 336, 348 |
| Bsh1236I | CGCG | 1 cut(s) | 245 |
| Bsh1285I | CGRYCG | 2 cut(s) | 337, 475 |
| BshFI | GGCC | 3 cut(s) | 109, 287, 340 |
| BshNI | GGYRCC | 1 cut(s) | 290 |
| BsiEI | CGRYCG | 2 cut(s) | 337, 475 |
| BsiHKAI | GWGCWC | 1 cut(s) | 356 |
| BsiSI | CCGG | 8 cut(s) | 197, 248, 288, 337, 346, 357, 391, 496 |
| BslFI | GGGAC | 1 cut(s) | 115 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 36, 94, 138, 139, 336, 348 |
| BsmAI | GTCTC | 2 cut(s) | 215, 473 |
| BsmFI | GGGAC | 1 cut(s) | 115 |
| BsnI | GGCC | 3 cut(s) | 109, 287, 340 |
| Bso31I | GGTCTC | 1 cut(s) | 215 |
| Bsp1286I | GDGCHC | 2 cut(s) | 329, 356 |
| Bsp13I | TCCGGA | 1 cut(s) | 196 |
| Bsp143I | GATC | 2 cut(s) | 97, 472 |
| BspANI | GGCC | 3 cut(s) | 109, 287, 340 |
| BspEI | TCCGGA | 1 cut(s) | 196 |
| BspFNI | CGCG | 1 cut(s) | 245 |
| BspHI | TCATGA | 1 cut(s) | 400 |
| BspLI | GGNNCC | 4 cut(s) | 131, 212, 292, 328 |
| BspMI | ACCTGC | 1 cut(s) | 126 |
| BspPI | GGATC | 1 cut(s) | 105 |
| BspT107I | GGYRCC | 1 cut(s) | 290 |
| BspTNI | GGTCTC | 1 cut(s) | 215 |
| BsrBI | CCGCTC | 1 cut(s) | 49 |
| BsrFI | RCCGGY | 3 cut(s) | 247, 287, 336 |
| BssAI | RCCGGY | 3 cut(s) | 247, 287, 336 |
| BssECI | CCNNGG | 3 cut(s) | 10, 110, 183 |
| BssMI | GATC | 2 cut(s) | 97, 472 |
| BssNI | GRCGYC | 1 cut(s) | 291 |
| BssT1I | CCWWGG | 1 cut(s) | 110 |
| Bst6I | CTCTTC | 1 cut(s) | 164 |
| BstACI | GRCGYC | 1 cut(s) | 291 |
| BstC8I | GCNNGC | 4 cut(s) | 249, 264, 289, 432 |
| BstDSI | CCRYGG | 1 cut(s) | 10 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 92 |
| BstF5I | GGATG | 4 cut(s) | 10, 46, 148, 193 |
| BstFNI | CGCG | 1 cut(s) | 245 |
| BstH2I | RGCGCY | 1 cut(s) | 294 |
| BstHHI | GCGC | 2 cut(s) | 247, 293 |
| BstKTI | GATC | 2 cut(s) | 100, 475 |
| BstMAI | GTCTC | 2 cut(s) | 215, 473 |
| BstMBI | GATC | 2 cut(s) | 97, 472 |
| BstMCI | CGRYCG | 2 cut(s) | 337, 475 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 284, 346, 382, 427 |
| BstSCI | CCNGG | 2 cut(s) | 344, 495 |
| BstUI | CGCG | 1 cut(s) | 245 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 232 |
| BsuRI | GGCC | 3 cut(s) | 109, 287, 340 |
| BtgI | CCRYGG | 1 cut(s) | 10 |
| BtgZI | GCGATG | 2 cut(s) | 67, 281 |
| BtrI | CACGTC | 1 cut(s) | 166 |
| BtsCI | GGATG | 4 cut(s) | 10, 46, 148, 193 |
| BveI | ACCTGC | 1 cut(s) | 126 |
| Cac8I | GCNNGC | 4 cut(s) | 249, 264, 289, 432 |
| CciI | TCATGA | 1 cut(s) | 400 |
| CfoI | GCGC | 2 cut(s) | 247, 293 |
| Cfr10I | RCCGGY | 3 cut(s) | 247, 287, 336 |
| Cfr13I | GGNCC | 2 cut(s) | 129, 339 |
| CviAII | CATG | 2 cut(s) | 59, 401 |
| CviJI | RGCY | 9 cut(s) | 19, 109, 213, 287, 327, 340, 411, 421, 446 |
| CviKI_1 | RGCY | 9 cut(s) | 19, 109, 213, 287, 327, 340, 411, 421, 446 |
| DinI | GGCGCC | 1 cut(s) | 292 |
| DpnI | GATC | 2 cut(s) | 99, 474 |
| DpnII | GATC | 2 cut(s) | 97, 472 |
| EaeI | YGGCCR | 1 cut(s) | 107 |
| Eam1104I | CTCTTC | 1 cut(s) | 164 |
| EarI | CTCTTC | 1 cut(s) | 164 |
| EciI | GGCGGA | 1 cut(s) | 148 |
| Eco130I | CCWWGG | 1 cut(s) | 110 |
| Eco24I | GRGCYC | 1 cut(s) | 329 |
| Eco31I | GGTCTC | 1 cut(s) | 215 |
| Eco47I | GGWCC | 1 cut(s) | 129 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 92 |
| EcoO109I | RGGNCCY | 1 cut(s) | 129 |
| EcoT14I | CCWWGG | 1 cut(s) | 110 |
| EcoT38I | GRGCYC | 1 cut(s) | 329 |
| EgeI | GGCGCC | 1 cut(s) | 292 |
| EheI | GGCGCC | 1 cut(s) | 292 |
| ErhI | CCWWGG | 1 cut(s) | 110 |
| FaeI | CATG | 2 cut(s) | 62, 404 |
| FaiI | YATR | 5 cut(s) | 60, 256, 402, 428, 443 |
| FaqI | GGGAC | 1 cut(s) | 115 |
| FatI | CATG | 2 cut(s) | 58, 400 |
| FauI | CCCGC | 2 cut(s) | 74, 140 |
| Fnu4HI | GCNGC | 2 cut(s) | 214, 279 |
| FokI | GGATG | 4 cut(s) | 17, 53, 155, 180 |
| FriOI | GRGCYC | 1 cut(s) | 329 |
| Fsp4HI | GCNGC | 2 cut(s) | 214, 279 |
| GlaI | GCGC | 2 cut(s) | 246, 292 |
| GluI | GCNGC | 2 cut(s) | 214, 279 |
| HaeII | RGCGCY | 1 cut(s) | 294 |
| HaeIII | GGCC | 3 cut(s) | 109, 287, 340 |
| HapII | CCGG | 8 cut(s) | 197, 248, 288, 337, 346, 357, 391, 496 |
| HhaI | GCGC | 2 cut(s) | 247, 293 |
| Hin1I | GRCGYC | 1 cut(s) | 291 |
| Hin1II | CATG | 2 cut(s) | 62, 404 |
| Hin6I | GCGC | 2 cut(s) | 245, 291 |
| HinP1I | GCGC | 2 cut(s) | 245, 291 |
| HinfI | GANTC | 2 cut(s) | 179, 379 |
| HpaII | CCGG | 8 cut(s) | 197, 248, 288, 337, 346, 357, 391, 496 |
| HphI | GGTGA | 1 cut(s) | 55 |
| Hpy188I | TCNGA | 2 cut(s) | 93, 184 |
| Hpy188III | TCNNGA | 3 cut(s) | 197, 401, 470 |
| Hpy99I | CGWCG | 1 cut(s) | 167 |
| HpyAV | CCTTC | 3 cut(s) | 88, 98, 277 |
| HpyCH4IV | ACGT | 1 cut(s) | 165 |
| HpyCH4V | TGCA | 1 cut(s) | 434 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 284, 346, 382, 427 |
| HpySE526I | ACGT | 1 cut(s) | 165 |
| Hsp92I | GRCGYC | 1 cut(s) | 291 |
| Hsp92II | CATG | 2 cut(s) | 62, 404 |
| HspAI | GCGC | 2 cut(s) | 245, 291 |
| KasI | GGCGCC | 1 cut(s) | 290 |
| Kpn2I | TCCGGA | 1 cut(s) | 196 |
| KroI | GCCGGC | 2 cut(s) | 247, 287 |
| KroNI | GCCGGC | 2 cut(s) | 249, 289 |
| Kzo9I | GATC | 2 cut(s) | 97, 472 |
| LmnI | GCTCC | 4 cut(s) | 151, 210, 332, 359 |
| LweI | GCATC | 2 cut(s) | 133, 265 |
| MaeII | ACGT | 1 cut(s) | 165 |
| MaeIII | GTNAC | 2 cut(s) | 61, 363 |
| MalI | GATC | 2 cut(s) | 99, 474 |
| MbiI | CCGCTC | 1 cut(s) | 49 |
| MboI | GATC | 2 cut(s) | 97, 472 |
| MboII | GAAGA | 1 cut(s) | 181 |
| MhlI | GDGCHC | 2 cut(s) | 329, 356 |
| MlsI | TGGCCA | 1 cut(s) | 109 |
| MluCI | AATT | 3 cut(s) | 423, 457, 509 |
| MluNI | TGGCCA | 1 cut(s) | 109 |
| Mly113I | GGCGCC | 1 cut(s) | 291 |
| MlyI | GAGTC | 1 cut(s) | 388 |
| MmeI | TCCRAC | 1 cut(s) | 156 |
| MnlI | CCTC | 6 cut(s) | 120, 160, 165, 178, 229, 387 |
| Mox20I | TGGCCA | 1 cut(s) | 109 |
| MreI | CGCCGGCG | 1 cut(s) | 247 |
| MroI | TCCGGA | 1 cut(s) | 196 |
| MroNI | GCCGGC | 2 cut(s) | 247, 287 |
| MscI | TGGCCA | 1 cut(s) | 109 |
| MslI | CAYNNNNRTG | 1 cut(s) | 405 |
| Msp20I | TGGCCA | 1 cut(s) | 109 |
| MspI | CCGG | 8 cut(s) | 197, 248, 288, 337, 346, 357, 391, 496 |
| MspR9I | CCNGG | 2 cut(s) | 346, 497 |
| MvnI | CGCG | 1 cut(s) | 245 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 284, 346, 382, 427 |
| NaeI | GCCGGC | 2 cut(s) | 249, 289 |
| NarI | GGCGCC | 1 cut(s) | 291 |
| NciI | CCSGG | 2 cut(s) | 346, 497 |
| NdeII | GATC | 2 cut(s) | 97, 472 |
| NgoMIV | GCCGGC | 2 cut(s) | 247, 287 |
| NlaIII | CATG | 2 cut(s) | 62, 404 |
| NlaIV | GGNNCC | 4 cut(s) | 131, 212, 292, 328 |
| NmuCI | GTSAC | 2 cut(s) | 61, 363 |
| PagI | TCATGA | 1 cut(s) | 400 |
| PaqCI | CACCTGC | 1 cut(s) | 126 |
| PdiI | GCCGGC | 2 cut(s) | 249, 289 |
| PfeI | GAWTC | 1 cut(s) | 179 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 36 |
| PkrI | GCNGC | 2 cut(s) | 215, 280 |
| Ple19I | CGATCG | 1 cut(s) | 475 |
| PleI | GAGTC | 1 cut(s) | 387 |
| PluTI | GGCGCC | 1 cut(s) | 294 |
| PpsI | GAGTC | 1 cut(s) | 387 |
| PpuMI | RGGWCCY | 1 cut(s) | 129 |
| Psp5II | RGGWCCY | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 4 cut(s) | 131, 212, 292, 328 |
| PspPI | GGNCC | 2 cut(s) | 129, 339 |
| PspPPI | RGGWCCY | 1 cut(s) | 129 |
| PvuI | CGATCG | 1 cut(s) | 475 |
| RseI | CAYNNNNRTG | 1 cut(s) | 405 |
| SatI | GCNGC | 2 cut(s) | 214, 279 |
| Sau3AI | GATC | 2 cut(s) | 97, 472 |
| Sau96I | GGNCC | 2 cut(s) | 129, 339 |
| SchI | GAGTC | 1 cut(s) | 388 |
| ScrFI | CCNGG | 2 cut(s) | 346, 497 |
| SduI | GDGCHC | 2 cut(s) | 329, 356 |
| SfaNI | GCATC | 2 cut(s) | 133, 265 |
| SfoI | GGCGCC | 1 cut(s) | 292 |
| SgrAI | CRCCGGYG | 1 cut(s) | 247 |
| SinI | GGWCC | 1 cut(s) | 129 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 405 |
| Sse9I | AATT | 3 cut(s) | 423, 457, 509 |
| SspDI | GGCGCC | 1 cut(s) | 290 |
| StyD4I | CCNGG | 2 cut(s) | 344, 495 |
| StyI | CCWWGG | 1 cut(s) | 110 |
| TaiI | ACGT | 1 cut(s) | 168 |
| TaqI | TCGA | 4 cut(s) | 45, 333, 471, 475 |
| TaqII | GACCGA | 1 cut(s) | 287 |
| TasI | AATT | 3 cut(s) | 423, 457, 509 |
| TauI | GCSGC | 2 cut(s) | 216, 281 |
| TfiI | GAWTC | 1 cut(s) | 179 |
| TseFI | GTSAC | 2 cut(s) | 61, 363 |
| Tsp45I | GTSAC | 2 cut(s) | 61, 363 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 36 |
| VpaK11BI | GGWCC | 1 cut(s) | 129 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 92 |
| XapI | RAATTY | 2 cut(s) | 457, 509 |