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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 664 |
| AccB1I | GGYRCC | 1 cut(s) | 664 |
| AccBSI | CCGCTC | 3 cut(s) | 31, 58, 196 |
| AccII | CGCG | 1 cut(s) | 516 |
| AclWI | GGATC | 1 cut(s) | 208 |
| AcoI | YGGCCR | 2 cut(s) | 327, 405 |
| AcsI | RAATTY | 1 cut(s) | 35 |
| AcuI | CTGAAG | 1 cut(s) | 103 |
| AcvI | CACGTG | 1 cut(s) | 311 |
| AcyI | GRCGYC | 2 cut(s) | 173, 650 |
| AfaI | GTAC | 4 cut(s) | 5, 666, 718, 896 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 283, 336, 394, 439, 661, 814 |
| AgsI | TTSAA | 3 cut(s) | 536, 544, 737 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 876 |
| AjiI | CACGTC | 1 cut(s) | 343 |
| AjnI | CCWGG | 4 cut(s) | 165, 186, 216, 452 |
| AluBI | AGCT | 4 cut(s) | 123, 319, 370, 932 |
| AluI | AGCT | 4 cut(s) | 123, 319, 370, 932 |
| Alw21I | GWGCWC | 1 cut(s) | 745 |
| Alw26I | GTCTC | 3 cut(s) | 367, 678, 863 |
| AlwI | GGATC | 1 cut(s) | 208 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 187 |
| Ama87I | CYCGRG | 4 cut(s) | 659, 748, 849, 888 |
| AoxI | GGCC | 6 cut(s) | 73, 327, 405, 594, 720, 840 |
| ApaI | GGGCCC | 1 cut(s) | 598 |
| ApeKI | GCWGC | 5 cut(s) | 181, 299, 319, 436, 581 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| Asp718I | GGTACC | 1 cut(s) | 664 |
| AspLEI | GCGC | 2 cut(s) | 518, 632 |
| AspS9I | GGNCC | 5 cut(s) | 511, 594, 595, 721, 841 |
| AsuHPI | GGTGA | 5 cut(s) | 478, 494, 655, 721, 794 |
| AvaI | CYCGRG | 4 cut(s) | 659, 748, 849, 888 |
| AvaII | GGWCC | 1 cut(s) | 511 |
| BaeGI | GKGCMC | 1 cut(s) | 598 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 656, 689 |
| BalI | TGGCCA | 1 cut(s) | 329 |
| BanI | GGYRCC | 1 cut(s) | 664 |
| BanII | GRGCYC | 1 cut(s) | 598 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 709, 741 |
| BbrPI | CACGTG | 1 cut(s) | 311 |
| Bbv12I | GWGCWC | 1 cut(s) | 745 |
| BbvI | GCAGC | 5 cut(s) | 193, 286, 306, 448, 593 |
| BccI | CCATC | 1 cut(s) | 851 |
| BceAI | ACGGC | 1 cut(s) | 735 |
| BciT130I | CCWGG | 4 cut(s) | 167, 188, 218, 454 |
| BciVI | GTATCC | 1 cut(s) | 283 |
| BcoDI | GTCTC | 3 cut(s) | 367, 678, 863 |
| BfaI | CTAG | 3 cut(s) | 62, 77, 599 |
| BfmI | CTRYAG | 2 cut(s) | 300, 434 |
| BfoI | RGCGCY | 1 cut(s) | 633 |
| BfuI | GTATCC | 1 cut(s) | 283 |
| Bme1390I | CCNGG | 4 cut(s) | 167, 188, 218, 454 |
| Bme18I | GGWCC | 1 cut(s) | 511 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 876 |
| BmeT110I | CYCGRG | 4 cut(s) | 659, 748, 849, 888 |
| BmgBI | CACGTC | 1 cut(s) | 343 |
| BmgT120I | GGNCC | 5 cut(s) | 511, 594, 595, 721, 841 |
| BmiI | GGNNCC | 5 cut(s) | 512, 595, 596, 666, 723 |
| BmrFI | CCNGG | 4 cut(s) | 167, 188, 218, 454 |
| BmrI | ACTGGG | 2 cut(s) | 649, 802 |
| BmsI | GCATC | 3 cut(s) | 286, 295, 603 |
| BmuI | ACTGGG | 2 cut(s) | 649, 802 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 752, 784, 754, 786 |
| BpmI | CTGGAG | 2 cut(s) | 392, 413 |
| BpuEI | CTTGAG | 1 cut(s) | 245 |
| BsaAI | YACGTR | 1 cut(s) | 311 |
| BsaBI | GATNNNNATC | 1 cut(s) | 428 |
| BsaHI | GRCGYC | 2 cut(s) | 173, 650 |
| BsaJI | CCNNGG | 5 cut(s) | 186, 217, 411, 660, 889 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 347, 377 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 283, 336, 394, 439, 661, 814 |
| Bse118I | RCCGGY | 1 cut(s) | 706 |
| Bse1I | ACTGG | 4 cut(s) | 109, 480, 644, 808 |
| Bse8I | GATNNNNATC | 1 cut(s) | 428 |
| BseBI | CCWGG | 4 cut(s) | 167, 188, 218, 454 |
| BseDI | CCNNGG | 5 cut(s) | 186, 217, 411, 660, 889 |
| BseGI | GGATG | 2 cut(s) | 429, 901 |
| BseJI | GATNNNNATC | 1 cut(s) | 428 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 283, 336, 394, 439, 661, 814 |
| BseMII | CTCAG | 3 cut(s) | 217, 488, 689 |
| BseNI | ACTGG | 4 cut(s) | 109, 480, 644, 808 |
| BseRI | GAGGAG | 2 cut(s) | 476, 789 |
| BseSI | GKGCMC | 1 cut(s) | 598 |
| BseXI | GCAGC | 5 cut(s) | 193, 286, 306, 448, 593 |
| BseYI | CCCAGC | 3 cut(s) | 590, 654, 789 |
| Bsh1236I | CGCG | 1 cut(s) | 516 |
| BshFI | GGCC | 6 cut(s) | 75, 329, 407, 596, 722, 842 |
| BshNI | GGYRCC | 1 cut(s) | 664 |
| BsiHKAI | GWGCWC | 1 cut(s) | 745 |
| BsiHKCI | CYCGRG | 4 cut(s) | 659, 748, 849, 888 |
| BsiSI | CCGG | 1 cut(s) | 707 |
| BslFI | GGGAC | 5 cut(s) | 353, 370, 524, 637, 805 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 283, 336, 394, 439, 661, 814 |
| BsmAI | GTCTC | 3 cut(s) | 367, 678, 863 |
| BsmFI | GGGAC | 5 cut(s) | 353, 370, 524, 637, 805 |
| BsmI | GAATGC | 2 cut(s) | 539, 571 |
| BsnI | GGCC | 6 cut(s) | 75, 329, 407, 596, 722, 842 |
| BsoBI | CYCGRG | 4 cut(s) | 659, 748, 849, 888 |
| Bsp120I | GGGCCC | 1 cut(s) | 594 |
| Bsp1286I | GDGCHC | 2 cut(s) | 598, 745 |
| Bsp1407I | TGTACA | 1 cut(s) | 3 |
| Bsp143I | GATC | 2 cut(s) | 213, 423 |
| BspANI | GGCC | 6 cut(s) | 75, 329, 407, 596, 722, 842 |
| BspCNI | CTCAG | 3 cut(s) | 216, 489, 688 |
| BspFNI | CGCG | 1 cut(s) | 516 |
| BspHI | TCATGA | 1 cut(s) | 15 |
| BspLI | GGNNCC | 5 cut(s) | 512, 595, 596, 666, 723 |
| BspMAI | CTGCAG | 2 cut(s) | 304, 438 |
| BspPI | GGATC | 1 cut(s) | 208 |
| BspT107I | GGYRCC | 1 cut(s) | 664 |
| BsrBI | CCGCTC | 3 cut(s) | 31, 58, 196 |
| BsrFI | RCCGGY | 1 cut(s) | 706 |
| BsrGI | TGTACA | 1 cut(s) | 3 |
| BsrI | ACTGG | 4 cut(s) | 109, 480, 644, 808 |
| BssAI | RCCGGY | 1 cut(s) | 706 |
| BssECI | CCNNGG | 5 cut(s) | 186, 217, 411, 660, 889 |
| BssMI | GATC | 2 cut(s) | 213, 423 |
| BssNI | GRCGYC | 2 cut(s) | 173, 650 |
| BssT1I | CCWWGG | 1 cut(s) | 411 |
| Bst2UI | CCWGG | 4 cut(s) | 167, 188, 218, 454 |
| Bst4CI | ACNGT | 2 cut(s) | 26, 549 |
| Bst6I | CTCTTC | 1 cut(s) | 204 |
| BstACI | GRCGYC | 2 cut(s) | 173, 650 |
| BstAUI | TGTACA | 1 cut(s) | 3 |
| BstBAI | YACGTR | 1 cut(s) | 311 |
| BstC8I | GCNNGC | 6 cut(s) | 56, 152, 317, 690, 745, 837 |
| BstDEI | CTNAG | 4 cut(s) | 177, 203, 497, 675 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 281, 392 |
| BstF5I | GGATG | 2 cut(s) | 429, 901 |
| BstFNI | CGCG | 1 cut(s) | 516 |
| BstH2I | RGCGCY | 1 cut(s) | 633 |
| BstHHI | GCGC | 2 cut(s) | 518, 632 |
| BstKTI | GATC | 2 cut(s) | 216, 426 |
| BstMAI | GTCTC | 3 cut(s) | 367, 678, 863 |
| BstMBI | GATC | 2 cut(s) | 213, 423 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 305, 524, 527, 536, 587, 676, 685 |
| BstNI | CCWGG | 4 cut(s) | 167, 188, 218, 454 |
| BstNSI | RCATGY | 1 cut(s) | 385 |
| BstSCI | CCNGG | 4 cut(s) | 165, 186, 216, 452 |
| BstSFI | CTRYAG | 2 cut(s) | 300, 434 |
| BstSLI | GKGCMC | 1 cut(s) | 598 |
| BstUI | CGCG | 1 cut(s) | 516 |
| BstV1I | GCAGC | 5 cut(s) | 193, 286, 306, 448, 593 |
| BstX2I | RGATCY | 1 cut(s) | 213 |
| BstYI | RGATCY | 1 cut(s) | 213 |
| BsuI | GTATCC | 1 cut(s) | 283 |
| BsuRI | GGCC | 6 cut(s) | 75, 329, 407, 596, 722, 842 |
| BtgZI | GCGATG | 1 cut(s) | 584 |
| BtrI | CACGTC | 1 cut(s) | 343 |
| BtsCI | GGATG | 2 cut(s) | 429, 901 |
| BtsIMutI | CAGTG | 1 cut(s) | 31 |
| Cac8I | GCNNGC | 6 cut(s) | 56, 152, 317, 690, 745, 837 |
| CaiI | CAGNNNCTG | 1 cut(s) | 187 |
| CciI | TCATGA | 1 cut(s) | 15 |
| CfoI | GCGC | 2 cut(s) | 518, 632 |
| Cfr10I | RCCGGY | 1 cut(s) | 706 |
| Cfr13I | GGNCC | 5 cut(s) | 511, 594, 595, 721, 841 |
| CseI | GACGC | 2 cut(s) | 162, 639 |
| Csp6I | GTAC | 4 cut(s) | 4, 665, 717, 895 |
| CviAII | CATG | 3 cut(s) | 16, 359, 382 |
| CviQI | GTAC | 4 cut(s) | 4, 665, 717, 895 |
| DdeI | CTNAG | 4 cut(s) | 177, 203, 497, 675 |
| DpnI | GATC | 2 cut(s) | 215, 425 |
| DpnII | GATC | 2 cut(s) | 213, 423 |
| DriI | GACNNNNNGTC | 1 cut(s) | 876 |
| EaeI | YGGCCR | 2 cut(s) | 327, 405 |
| Eam1104I | CTCTTC | 1 cut(s) | 204 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 876 |
| EarI | CTCTTC | 1 cut(s) | 204 |
| EciI | GGCGGA | 3 cut(s) | 254, 302, 894 |
| Eco130I | CCWWGG | 1 cut(s) | 411 |
| Eco24I | GRGCYC | 1 cut(s) | 598 |
| Eco47I | GGWCC | 1 cut(s) | 511 |
| Eco57I | CTGAAG | 1 cut(s) | 103 |
| Eco72I | CACGTG | 1 cut(s) | 311 |
| Eco88I | CYCGRG | 4 cut(s) | 659, 748, 849, 888 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 281, 392 |
| EcoO109I | RGGNCCY | 2 cut(s) | 594, 595 |
| EcoRI | GAATTC | 1 cut(s) | 35 |
| EcoRII | CCWGG | 4 cut(s) | 165, 186, 216, 452 |
| EcoT14I | CCWWGG | 1 cut(s) | 411 |
| EcoT38I | GRGCYC | 1 cut(s) | 598 |
| ErhI | CCWWGG | 1 cut(s) | 411 |
| FaeI | CATG | 3 cut(s) | 19, 362, 385 |
| FaiI | YATR | 3 cut(s) | 17, 360, 383 |
| FaqI | GGGAC | 5 cut(s) | 353, 370, 524, 637, 805 |
| FatI | CATG | 3 cut(s) | 15, 358, 381 |
| FauI | CCCGC | 7 cut(s) | 24, 73, 189, 330, 432, 693, 772 |
| FokI | GGATG | 2 cut(s) | 416, 888 |
| FriOI | GRGCYC | 1 cut(s) | 598 |
| FspBI | CTAG | 3 cut(s) | 62, 77, 599 |
| GlaI | GCGC | 2 cut(s) | 517, 631 |
| GsaI | CCCAGC | 3 cut(s) | 594, 658, 793 |
| GsuI | CTGGAG | 2 cut(s) | 392, 413 |
| HaeII | RGCGCY | 1 cut(s) | 633 |
| HaeIII | GGCC | 6 cut(s) | 75, 329, 407, 596, 722, 842 |
| HapII | CCGG | 1 cut(s) | 707 |
| HgaI | GACGC | 2 cut(s) | 162, 639 |
| HhaI | GCGC | 2 cut(s) | 518, 632 |
| Hin1I | GRCGYC | 2 cut(s) | 173, 650 |
| Hin1II | CATG | 3 cut(s) | 19, 362, 385 |
| Hin6I | GCGC | 2 cut(s) | 516, 630 |
| HinP1I | GCGC | 2 cut(s) | 516, 630 |
| HinfI | GANTC | 5 cut(s) | 443, 785, 796, 871, 877 |
| HpaII | CCGG | 1 cut(s) | 707 |
| HphI | GGTGA | 5 cut(s) | 478, 494, 655, 721, 794 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 717 |
| Hpy188I | TCNGA | 2 cut(s) | 814, 876 |
| Hpy188III | TCNNGA | 4 cut(s) | 16, 224, 496, 771 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 717 |
| HpyAV | CCTTC | 7 cut(s) | 127, 473, 500, 580, 640, 731, 735 |
| HpyCH4III | ACNGT | 2 cut(s) | 26, 549 |
| HpyCH4IV | ACGT | 3 cut(s) | 310, 342, 606 |
| HpyCH4V | TGCA | 5 cut(s) | 154, 302, 308, 322, 436 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 305, 524, 527, 536, 587, 676, 685 |
| HpyF3I | CTNAG | 4 cut(s) | 177, 203, 497, 675 |
| HpySE526I | ACGT | 3 cut(s) | 310, 342, 606 |
| Hsp92I | GRCGYC | 2 cut(s) | 173, 650 |
| Hsp92II | CATG | 3 cut(s) | 19, 362, 385 |
| HspAI | GCGC | 2 cut(s) | 516, 630 |
| KpnI | GGTACC | 1 cut(s) | 668 |
| Kzo9I | GATC | 2 cut(s) | 213, 423 |
| LmnI | GCTCC | 2 cut(s) | 96, 373 |
| Lsp1109I | GCAGC | 5 cut(s) | 193, 286, 306, 448, 593 |
| LweI | GCATC | 3 cut(s) | 286, 295, 603 |
| MaeI | CTAG | 3 cut(s) | 62, 77, 599 |
| MaeII | ACGT | 3 cut(s) | 310, 342, 606 |
| MaeIII | GTNAC | 2 cut(s) | 134, 782 |
| MalI | GATC | 2 cut(s) | 215, 425 |
| MbiI | CCGCTC | 3 cut(s) | 31, 58, 196 |
| MboI | GATC | 2 cut(s) | 213, 423 |
| MboII | GAAGA | 4 cut(s) | 221, 481, 706, 938 |
| MflI | RGATCY | 1 cut(s) | 213 |
| MhlI | GDGCHC | 2 cut(s) | 598, 745 |
| MlsI | TGGCCA | 1 cut(s) | 329 |
| MluCI | AATT | 2 cut(s) | 35, 254 |
| MluNI | TGGCCA | 1 cut(s) | 329 |
| MlyI | GAGTC | 5 cut(s) | 452, 779, 790, 865, 886 |
| MmeI | TCCRAC | 2 cut(s) | 240, 792 |
| Mox20I | TGGCCA | 1 cut(s) | 329 |
| MscI | TGGCCA | 1 cut(s) | 329 |
| Msp20I | TGGCCA | 1 cut(s) | 329 |
| MspA1I | CMGCKG | 6 cut(s) | 337, 439, 530, 670, 779, 793 |
| MspI | CCGG | 1 cut(s) | 707 |
| MspR9I | CCNGG | 4 cut(s) | 167, 188, 218, 454 |
| Mva1269I | GAATGC | 2 cut(s) | 539, 571 |
| MvaI | CCWGG | 4 cut(s) | 167, 188, 218, 454 |
| MvnI | CGCG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 305, 524, 527, 536, 587, 676, 685 |
| NdeII | GATC | 2 cut(s) | 213, 423 |
| NlaIII | CATG | 3 cut(s) | 19, 362, 385 |
| NlaIV | GGNNCC | 5 cut(s) | 512, 595, 596, 666, 723 |
| NmuCI | GTSAC | 2 cut(s) | 134, 782 |
| NspI | RCATGY | 1 cut(s) | 385 |
| PaeR7I | CTCGAG | 1 cut(s) | 849 |
| PagI | TCATGA | 1 cut(s) | 15 |
| PctI | GAATGC | 2 cut(s) | 539, 571 |
| PflFI | GACNNNGTC | 1 cut(s) | 359 |
| PleI | GAGTC | 5 cut(s) | 451, 779, 790, 865, 885 |
| PmaCI | CACGTG | 1 cut(s) | 311 |
| PmlI | CACGTG | 1 cut(s) | 311 |
| PpsI | GAGTC | 5 cut(s) | 451, 779, 790, 865, 885 |
| Ppu21I | YACGTR | 1 cut(s) | 311 |
| Psp6I | CCWGG | 4 cut(s) | 165, 186, 216, 452 |
| PspCI | CACGTG | 1 cut(s) | 311 |
| PspFI | CCCAGC | 3 cut(s) | 590, 654, 789 |
| PspGI | CCWGG | 4 cut(s) | 165, 186, 216, 452 |
| PspN4I | GGNNCC | 5 cut(s) | 512, 595, 596, 666, 723 |
| PspOMI | GGGCCC | 1 cut(s) | 594 |
| PspPI | GGNCC | 5 cut(s) | 511, 594, 595, 721, 841 |
| PspXI | VCTCGAGB | 1 cut(s) | 849 |
| PsrI | GAACNNNNNNTAC | 1 cut(s) | 28 |
| PstI | CTGCAG | 2 cut(s) | 304, 438 |
| PstNI | CAGNNNCTG | 1 cut(s) | 187 |
| PsuI | RGATCY | 1 cut(s) | 213 |
| PsyI | GACNNNGTC | 1 cut(s) | 359 |
| RsaI | GTAC | 4 cut(s) | 5, 666, 718, 896 |
| RsaNI | GTAC | 4 cut(s) | 4, 665, 717, 895 |
| Sau3AI | GATC | 2 cut(s) | 213, 423 |
| Sau96I | GGNCC | 5 cut(s) | 511, 594, 595, 721, 841 |
| SchI | GAGTC | 5 cut(s) | 452, 779, 790, 865, 886 |
| ScrFI | CCNGG | 4 cut(s) | 167, 188, 218, 454 |
| SduI | GDGCHC | 2 cut(s) | 598, 745 |
| SfaNI | GCATC | 3 cut(s) | 286, 295, 603 |
| SfcI | CTRYAG | 2 cut(s) | 300, 434 |
| Sfr274I | CTCGAG | 1 cut(s) | 849 |
| SinI | GGWCC | 1 cut(s) | 511 |
| SlaI | CTCGAG | 1 cut(s) | 849 |
| SmlI | CTYRAG | 2 cut(s) | 224, 849 |
| SmoI | CTYRAG | 2 cut(s) | 224, 849 |
| Sse9I | AATT | 2 cut(s) | 35, 254 |
| SspMI | CTAG | 3 cut(s) | 62, 77, 599 |
| StyD4I | CCNGG | 4 cut(s) | 165, 186, 216, 452 |
| StyI | CCWWGG | 1 cut(s) | 411 |
| TaaI | ACNGT | 2 cut(s) | 26, 549 |
| TaiI | ACGT | 3 cut(s) | 313, 345, 609 |
| TaqI | TCGA | 3 cut(s) | 426, 772, 850 |
| TaqII | GACCGA | 1 cut(s) | 122 |
| TasI | AATT | 2 cut(s) | 35, 254 |
| TatI | WGTACW | 1 cut(s) | 3 |
| TauI | GCSGC | 9 cut(s) | 61, 75, 173, 410, 452, 521, 530, 842, 910 |
| TscAI | CASTG | 1 cut(s) | 31 |
| TseFI | GTSAC | 2 cut(s) | 134, 782 |
| TseI | GCWGC | 5 cut(s) | 181, 299, 319, 436, 581 |
| Tsp45I | GTSAC | 2 cut(s) | 134, 782 |
| TspDTI | ATGAA | 2 cut(s) | 4, 587 |
| TspGWI | ACGGA | 1 cut(s) | 23 |
| TspRI | CASTG | 1 cut(s) | 31 |
| Tth111I | GACNNNGTC | 1 cut(s) | 359 |
| VpaK11BI | GGWCC | 1 cut(s) | 511 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 281, 392 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XceI | RCATGY | 1 cut(s) | 385 |
| XhoI | CTCGAG | 1 cut(s) | 849 |
| XspI | CTAG | 3 cut(s) | 62, 77, 599 |