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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1187 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 307 |
| Acc36I | ACCTGC | 1 cut(s) | 1187 |
| AccB1I | GGYRCC | 6 cut(s) | 103, 316, 938, 1067, 1259, 1574 |
| AccBSI | CCGCTC | 2 cut(s) | 694, 1074 |
| AccI | GTMKAC | 1 cut(s) | 225 |
| AccII | CGCG | 5 cut(s) | 1037, 1132, 1184, 1399, 1623 |
| AccIII | TCCGGA | 1 cut(s) | 1526 |
| AclWI | GGATC | 2 cut(s) | 750, 769 |
| AcoI | YGGCCR | 4 cut(s) | 141, 624, 867, 945 |
| AcyI | GRCGYC | 2 cut(s) | 317, 1233 |
| AfaI | GTAC | 2 cut(s) | 1135, 1316 |
| AgsI | TTSAA | 5 cut(s) | 289, 441, 539, 782, 1616 |
| AjnI | CCWGG | 6 cut(s) | 216, 420, 510, 687, 840, 1381 |
| AluBI | AGCT | 8 cut(s) | 468, 547, 580, 715, 820, 848, 1533, 1587 |
| AluI | AGCT | 8 cut(s) | 468, 547, 580, 715, 820, 848, 1533, 1587 |
| Alw21I | GWGCWC | 1 cut(s) | 193 |
| Alw26I | GTCTC | 4 cut(s) | 236, 712, 875, 1483 |
| AlwI | GGATC | 2 cut(s) | 750, 769 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 56, 688 |
| Ama87I | CYCGRG | 3 cut(s) | 407, 531, 569 |
| Aor13HI | TCCGGA | 1 cut(s) | 1526 |
| ApeKI | GCWGC | 6 cut(s) | 4, 77, 88, 496, 515, 1055 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 654, 686 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1534 |
| AspLEI | GCGC | 6 cut(s) | 82, 319, 977, 1184, 1623, 1625 |
| AspS9I | GGNCC | 9 cut(s) | 23, 253, 280, 523, 685, 801, 1010, 1293, 1513 |
| AsuC2I | CCSGG | 3 cut(s) | 532, 533, 1264 |
| AsuHPI | GGTGA | 3 cut(s) | 193, 823, 1473 |
| AsuNHI | GCTAGC | 1 cut(s) | 1268 |
| AvaI | CYCGRG | 3 cut(s) | 407, 531, 569 |
| AvaII | GGWCC | 5 cut(s) | 253, 523, 685, 801, 1293 |
| BaeGI | GKGCMC | 4 cut(s) | 108, 1072, 1174, 1579 |
| BalI | TGGCCA | 2 cut(s) | 626, 947 |
| BanI | GGYRCC | 6 cut(s) | 103, 316, 938, 1067, 1259, 1574 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1659, 1691 |
| BbsI | GAAGAC | 2 cut(s) | 379, 1141 |
| Bbv12I | GWGCWC | 1 cut(s) | 193 |
| BbvCI | CCTCAGC | 3 cut(s) | 737, 849, 1062 |
| BbvI | GCAGC | 5 cut(s) | 64, 100, 483, 527, 1042 |
| BccI | CCATC | 8 cut(s) | 264, 358, 399, 1021, 1244, 1254, 1504, 1634 |
| BceAI | ACGGC | 6 cut(s) | 46, 153, 419, 431, 1461, 1698 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 56, 90, 649, 683 |
| BciT130I | CCWGG | 6 cut(s) | 218, 422, 512, 689, 842, 1383 |
| BcnI | CCSGG | 3 cut(s) | 532, 533, 1264 |
| BcoDI | GTCTC | 4 cut(s) | 236, 712, 875, 1483 |
| BfaI | CTAG | 2 cut(s) | 798, 1269 |
| BfoI | RGCGCY | 2 cut(s) | 320, 978 |
| BfuAI | ACCTGC | 1 cut(s) | 1187 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 30, 1009 |
| Bme1390I | CCNGG | 9 cut(s) | 218, 422, 512, 532, 533, 689, 842, 1264, 1383 |
| Bme18I | GGWCC | 5 cut(s) | 253, 523, 685, 801, 1293 |
| BmeT110I | CYCGRG | 3 cut(s) | 407, 531, 569 |
| BmgT120I | GGNCC | 9 cut(s) | 23, 253, 280, 523, 685, 801, 1010, 1293, 1513 |
| BmrFI | CCNGG | 9 cut(s) | 218, 422, 512, 532, 533, 689, 842, 1264, 1383 |
| BmrI | ACTGGG | 2 cut(s) | 1343, 1351 |
| BmsI | GCATC | 4 cut(s) | 53, 631, 640, 1004 |
| BmtI | GCTAGC | 1 cut(s) | 1272 |
| BmuI | ACTGGG | 2 cut(s) | 1343, 1351 |
| BpiI | GAAGAC | 2 cut(s) | 379, 1141 |
| BpmI | CTGGAG | 3 cut(s) | 78, 443, 710 |
| Bpu10I | CCTNAGC | 9 cut(s) | 372, 464, 548, 591, 737, 756, 849, 1062, 1075 |
| BpuEI | CTTGAG | 3 cut(s) | 194, 842, 1186 |
| BpuMI | CCSGG | 3 cut(s) | 532, 533, 1264 |
| Bsa29I | ATCGAT | 1 cut(s) | 981 |
| BsaHI | GRCGYC | 2 cut(s) | 317, 1233 |
| BsaI | GGTCTC | 1 cut(s) | 236 |
| BsaWI | WCCGGW | 1 cut(s) | 1526 |
| Bse118I | RCCGGY | 1 cut(s) | 935 |
| Bse1I | ACTGG | 7 cut(s) | 61, 83, 454, 606, 1349, 1357, 1484 |
| BseAI | TCCGGA | 1 cut(s) | 1526 |
| BseBI | CCWGG | 6 cut(s) | 218, 422, 512, 689, 842, 1383 |
| BseCI | ATCGAT | 1 cut(s) | 981 |
| BseGI | GGATG | 8 cut(s) | 68, 458, 613, 655, 995, 1048, 1192, 1236 |
| BseNI | ACTGG | 7 cut(s) | 61, 83, 454, 606, 1349, 1357, 1484 |
| BsePI | GCGCGC | 1 cut(s) | 1621 |
| BseSI | GKGCMC | 4 cut(s) | 108, 1072, 1174, 1579 |
| BseX3I | CGGCCG | 2 cut(s) | 141, 867 |
| BseXI | GCAGC | 5 cut(s) | 64, 100, 483, 527, 1042 |
| BseYI | CCCAGC | 4 cut(s) | 305, 580, 999, 1007 |
| BsgI | GTGCAG | 3 cut(s) | 65, 107, 482 |
| Bsh1236I | CGCG | 5 cut(s) | 1037, 1132, 1184, 1399, 1623 |
| Bsh1285I | CGRYCG | 2 cut(s) | 144, 870 |
| BshNI | GGYRCC | 6 cut(s) | 103, 316, 938, 1067, 1259, 1574 |
| BshVI | ATCGAT | 1 cut(s) | 981 |
| BsiEI | CGRYCG | 2 cut(s) | 144, 870 |
| BsiHKAI | GWGCWC | 1 cut(s) | 193 |
| BsiHKCI | CYCGRG | 3 cut(s) | 407, 531, 569 |
| BsiSI | CCGG | 5 cut(s) | 532, 936, 1103, 1263, 1527 |
| BslFI | GGGAC | 5 cut(s) | 56, 136, 579, 1337, 1664 |
| BsmAI | GTCTC | 4 cut(s) | 236, 712, 875, 1483 |
| BsmBI | CGTCTC | 2 cut(s) | 712, 875 |
| BsmFI | GGGAC | 5 cut(s) | 56, 136, 579, 1337, 1664 |
| Bso31I | GGTCTC | 1 cut(s) | 236 |
| BsoBI | CYCGRG | 3 cut(s) | 407, 531, 569 |
| Bsp1286I | GDGCHC | 5 cut(s) | 108, 193, 1072, 1174, 1579 |
| Bsp13I | TCCGGA | 1 cut(s) | 1526 |
| Bsp143I | GATC | 4 cut(s) | 558, 700, 742, 774 |
| Bsp19I | CCATGG | 2 cut(s) | 655, 942 |
| BspDI | ATCGAT | 1 cut(s) | 981 |
| BspEI | TCCGGA | 1 cut(s) | 1526 |
| BspFNI | CGCG | 5 cut(s) | 1037, 1132, 1184, 1399, 1623 |
| BspMI | ACCTGC | 1 cut(s) | 1187 |
| BspOI | GCTAGC | 1 cut(s) | 1272 |
| BspPI | GGATC | 2 cut(s) | 750, 769 |
| BspT107I | GGYRCC | 6 cut(s) | 103, 316, 938, 1067, 1259, 1574 |
| BspTNI | GGTCTC | 1 cut(s) | 236 |
| BsrBI | CCGCTC | 2 cut(s) | 694, 1074 |
| BsrFI | RCCGGY | 1 cut(s) | 935 |
| BsrI | ACTGG | 7 cut(s) | 61, 83, 454, 606, 1349, 1357, 1484 |
| BssAI | RCCGGY | 1 cut(s) | 935 |
| BssHII | GCGCGC | 1 cut(s) | 1621 |
| BssMI | GATC | 4 cut(s) | 558, 700, 742, 774 |
| BssNAI | GTATAC | 1 cut(s) | 226 |
| BssNI | GRCGYC | 2 cut(s) | 317, 1233 |
| BssT1I | CCWWGG | 5 cut(s) | 655, 942, 1214, 1551, 1696 |
| Bst1107I | GTATAC | 1 cut(s) | 226 |
| Bst2UI | CCWGG | 6 cut(s) | 218, 422, 512, 689, 842, 1383 |
| Bst4CI | ACNGT | 6 cut(s) | 247, 507, 638, 894, 1319, 1475 |
| BstACI | GRCGYC | 2 cut(s) | 317, 1233 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1426 |
| BstDSI | CCRYGG | 3 cut(s) | 39, 655, 942 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 736 |
| BstF5I | GGATG | 8 cut(s) | 68, 458, 613, 655, 995, 1048, 1192, 1236 |
| BstFNI | CGCG | 5 cut(s) | 1037, 1132, 1184, 1399, 1623 |
| BstH2I | RGCGCY | 2 cut(s) | 320, 978 |
| BstHHI | GCGC | 6 cut(s) | 82, 319, 977, 1184, 1623, 1625 |
| BstKTI | GATC | 4 cut(s) | 561, 703, 745, 777 |
| BstMAI | GTCTC | 4 cut(s) | 236, 712, 875, 1483 |
| BstMBI | GATC | 4 cut(s) | 558, 700, 742, 774 |
| BstMCI | CGRYCG | 2 cut(s) | 144, 870 |
| BstNI | CCWGG | 6 cut(s) | 218, 422, 512, 689, 842, 1383 |
| BstNSI | RCATGY | 1 cut(s) | 1560 |
| BstSCI | CCNGG | 9 cut(s) | 216, 420, 510, 530, 531, 687, 840, 1262, 1381 |
| BstSLI | GKGCMC | 4 cut(s) | 108, 1072, 1174, 1579 |
| BstUI | CGCG | 5 cut(s) | 1037, 1132, 1184, 1399, 1623 |
| BstV1I | GCAGC | 5 cut(s) | 64, 100, 483, 527, 1042 |
| BstV2I | GAAGAC | 2 cut(s) | 379, 1141 |
| BstX2I | RGATCY | 1 cut(s) | 774 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1007 |
| BstYI | RGATCY | 1 cut(s) | 774 |
| BstZ17I | GTATAC | 1 cut(s) | 226 |
| BstZI | CGGCCG | 2 cut(s) | 141, 867 |
| Bsu15I | ATCGAT | 1 cut(s) | 981 |
| BsuTUI | ATCGAT | 1 cut(s) | 981 |
| BtgI | CCRYGG | 3 cut(s) | 39, 655, 942 |
| BtgZI | GCGATG | 1 cut(s) | 81 |
| BtsCI | GGATG | 8 cut(s) | 68, 458, 613, 655, 995, 1048, 1192, 1236 |
| BtsIMutI | CAGTG | 3 cut(s) | 90, 162, 266 |
| BveI | ACCTGC | 1 cut(s) | 1187 |
| CaiI | CAGNNNCTG | 2 cut(s) | 56, 688 |
| CciNI | GCGGCCGC | 2 cut(s) | 141, 867 |
| CfoI | GCGC | 6 cut(s) | 82, 319, 977, 1184, 1623, 1625 |
| Cfr10I | RCCGGY | 1 cut(s) | 935 |
| Cfr13I | GGNCC | 9 cut(s) | 23, 253, 280, 523, 685, 801, 1010, 1293, 1513 |
| Cfr9I | CCCGGG | 1 cut(s) | 531 |
| ClaI | ATCGAT | 1 cut(s) | 981 |
| CseI | GACGC | 3 cut(s) | 507, 1088, 1241 |
| Csp6I | GTAC | 2 cut(s) | 1134, 1315 |
| CviAII | CATG | 6 cut(s) | 656, 746, 916, 943, 1465, 1557 |
| CviQI | GTAC | 2 cut(s) | 1134, 1315 |
| DinI | GGCGCC | 1 cut(s) | 318 |
| DpnI | GATC | 4 cut(s) | 560, 702, 744, 776 |
| DpnII | GATC | 4 cut(s) | 558, 700, 742, 774 |
| DraI | TTTAAA | 1 cut(s) | 889 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 307 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 307 |
| EaeI | YGGCCR | 4 cut(s) | 141, 624, 867, 945 |
| EagI | CGGCCG | 2 cut(s) | 141, 867 |
| EciI | GGCGGA | 3 cut(s) | 620, 1121, 1528 |
| EclXI | CGGCCG | 2 cut(s) | 141, 867 |
| Eco130I | CCWWGG | 5 cut(s) | 655, 942, 1214, 1551, 1696 |
| Eco31I | GGTCTC | 1 cut(s) | 236 |
| Eco47I | GGWCC | 5 cut(s) | 253, 523, 685, 801, 1293 |
| Eco52I | CGGCCG | 2 cut(s) | 141, 867 |
| Eco88I | CYCGRG | 3 cut(s) | 407, 531, 569 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 736 |
| EcoO109I | RGGNCCY | 2 cut(s) | 280, 685 |
| EcoRII | CCWGG | 6 cut(s) | 216, 420, 510, 687, 840, 1381 |
| EcoT14I | CCWWGG | 5 cut(s) | 655, 942, 1214, 1551, 1696 |
| EgeI | GGCGCC | 1 cut(s) | 318 |
| EheI | GGCGCC | 1 cut(s) | 318 |
| ErhI | CCWWGG | 5 cut(s) | 655, 942, 1214, 1551, 1696 |
| Esp3I | CGTCTC | 2 cut(s) | 712, 875 |
| FaeI | CATG | 6 cut(s) | 659, 749, 919, 946, 1468, 1560 |
| FaqI | GGGAC | 5 cut(s) | 56, 136, 579, 1337, 1664 |
| FatI | CATG | 6 cut(s) | 655, 745, 915, 942, 1464, 1556 |
| FauI | CCCGC | 6 cut(s) | 115, 1012, 1042, 1060, 1079, 1413 |
| FauNDI | CATATG | 1 cut(s) | 349 |
| FblI | GTMKAC | 1 cut(s) | 225 |
| FokI | GGATG | 8 cut(s) | 75, 445, 620, 662, 982, 1055, 1199, 1223 |
| FspBI | CTAG | 2 cut(s) | 798, 1269 |
| GlaI | GCGC | 6 cut(s) | 81, 318, 976, 1183, 1622, 1624 |
| GsaI | CCCAGC | 4 cut(s) | 309, 584, 1003, 1011 |
| GsuI | CTGGAG | 3 cut(s) | 78, 443, 710 |
| HaeII | RGCGCY | 2 cut(s) | 320, 978 |
| HapII | CCGG | 5 cut(s) | 532, 936, 1103, 1263, 1527 |
| HgaI | GACGC | 3 cut(s) | 507, 1088, 1241 |
| HhaI | GCGC | 6 cut(s) | 82, 319, 977, 1184, 1623, 1625 |
| Hin1I | GRCGYC | 2 cut(s) | 317, 1233 |
| Hin1II | CATG | 6 cut(s) | 659, 749, 919, 946, 1468, 1560 |
| Hin6I | GCGC | 6 cut(s) | 80, 317, 975, 1182, 1621, 1623 |
| HinP1I | GCGC | 6 cut(s) | 80, 317, 975, 1182, 1621, 1623 |
| HincII | GTYRAC | 1 cut(s) | 451 |
| HindII | GTYRAC | 1 cut(s) | 451 |
| HindIII | AAGCTT | 2 cut(s) | 818, 1531 |
| HinfI | GANTC | 2 cut(s) | 567, 1112 |
| HpaI | GTTAAC | 1 cut(s) | 451 |
| HpaII | CCGG | 5 cut(s) | 532, 936, 1103, 1263, 1527 |
| HphI | GGTGA | 3 cut(s) | 193, 823, 1473 |
| Hpy166II | GTNNAC | 2 cut(s) | 226, 451 |
| Hpy188I | TCNGA | 4 cut(s) | 313, 523, 1144, 1509 |
| Hpy188III | TCNNGA | 3 cut(s) | 1165, 1527, 1679 |
| Hpy8I | GTNNAC | 2 cut(s) | 226, 451 |
| Hpy99I | CGWCG | 4 cut(s) | 32, 325, 523, 674 |
| HpyCH4III | ACNGT | 6 cut(s) | 247, 507, 638, 894, 1319, 1475 |
| HpyCH4IV | ACGT | 2 cut(s) | 859, 884 |
| HpyCH4V | TGCA | 9 cut(s) | 7, 46, 88, 499, 1028, 1420, 1429, 1468, 1560 |
| HpySE526I | ACGT | 2 cut(s) | 859, 884 |
| Hsp92I | GRCGYC | 2 cut(s) | 317, 1233 |
| Hsp92II | CATG | 6 cut(s) | 659, 749, 919, 946, 1468, 1560 |
| HspAI | GCGC | 6 cut(s) | 80, 317, 975, 1182, 1621, 1623 |
| KasI | GGCGCC | 1 cut(s) | 316 |
| Kpn2I | TCCGGA | 1 cut(s) | 1526 |
| KspAI | GTTAAC | 1 cut(s) | 451 |
| Kzo9I | GATC | 4 cut(s) | 558, 700, 742, 774 |
| LmnI | GCTCC | 7 cut(s) | 188, 367, 544, 577, 613, 691, 845 |
| Lsp1109I | GCAGC | 5 cut(s) | 64, 100, 483, 527, 1042 |
| LweI | GCATC | 4 cut(s) | 53, 631, 640, 1004 |
| MaeI | CTAG | 2 cut(s) | 798, 1269 |
| MaeII | ACGT | 2 cut(s) | 859, 884 |
| MaeIII | GTNAC | 8 cut(s) | 157, 199, 211, 326, 832, 1229, 1441, 1691 |
| MalI | GATC | 4 cut(s) | 560, 702, 744, 776 |
| MbiI | CCGCTC | 2 cut(s) | 694, 1074 |
| MboI | GATC | 4 cut(s) | 558, 700, 742, 774 |
| MboII | GAAGA | 5 cut(s) | 277, 379, 826, 1141, 1667 |
| MflI | RGATCY | 1 cut(s) | 774 |
| MhlI | GDGCHC | 5 cut(s) | 108, 193, 1072, 1174, 1579 |
| MlsI | TGGCCA | 2 cut(s) | 626, 947 |
| MluCI | AATT | 3 cut(s) | 429, 662, 1282 |
| MluNI | TGGCCA | 2 cut(s) | 626, 947 |
| Mly113I | GGCGCC | 1 cut(s) | 317 |
| MlyI | GAGTC | 2 cut(s) | 561, 1106 |
| MmeI | TCCRAC | 2 cut(s) | 501, 1341 |
| Mox20I | TGGCCA | 2 cut(s) | 626, 947 |
| MroI | TCCGGA | 1 cut(s) | 1526 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1534 |
| MscI | TGGCCA | 2 cut(s) | 626, 947 |
| MseI | TTAA | 2 cut(s) | 450, 888 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1572 |
| Msp20I | TGGCCA | 2 cut(s) | 626, 947 |
| MspA1I | CMGCKG | 4 cut(s) | 206, 875, 1007, 1055 |
| MspI | CCGG | 5 cut(s) | 532, 936, 1103, 1263, 1527 |
| MspR9I | CCNGG | 9 cut(s) | 218, 422, 512, 532, 533, 689, 842, 1264, 1383 |
| MssI | GTTTAAAC | 1 cut(s) | 889 |
| MvaI | CCWGG | 6 cut(s) | 218, 422, 512, 689, 842, 1383 |
| MvnI | CGCG | 5 cut(s) | 1037, 1132, 1184, 1399, 1623 |
| NarI | GGCGCC | 1 cut(s) | 317 |
| NciI | CCSGG | 3 cut(s) | 532, 533, 1264 |
| NcoI | CCATGG | 2 cut(s) | 655, 942 |
| NdeI | CATATG | 1 cut(s) | 349 |
| NdeII | GATC | 4 cut(s) | 558, 700, 742, 774 |
| NheI | GCTAGC | 1 cut(s) | 1268 |
| NlaIII | CATG | 6 cut(s) | 659, 749, 919, 946, 1468, 1560 |
| NmeAIII | GCCGAG | 1 cut(s) | 449 |
| NmuCI | GTSAC | 7 cut(s) | 157, 199, 211, 326, 832, 1229, 1441 |
| NotI | GCGGCCGC | 2 cut(s) | 141, 867 |
| NspI | RCATGY | 1 cut(s) | 1560 |
| PaeI | GCATGC | 1 cut(s) | 1560 |
| PaeR7I | CTCGAG | 1 cut(s) | 569 |
| PaqCI | CACCTGC | 1 cut(s) | 1187 |
| PauI | GCGCGC | 1 cut(s) | 1621 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 36 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1534 |
| PleI | GAGTC | 2 cut(s) | 561, 1106 |
| PluTI | GGCGCC | 1 cut(s) | 320 |
| PmeI | GTTTAAAC | 1 cut(s) | 889 |
| PpsI | GAGTC | 2 cut(s) | 561, 1106 |
| PpuMI | RGGWCCY | 1 cut(s) | 685 |
| Psp5II | RGGWCCY | 1 cut(s) | 685 |
| Psp6I | CCWGG | 6 cut(s) | 216, 420, 510, 687, 840, 1381 |
| PspFI | CCCAGC | 4 cut(s) | 305, 580, 999, 1007 |
| PspGI | CCWGG | 6 cut(s) | 216, 420, 510, 687, 840, 1381 |
| PspPI | GGNCC | 9 cut(s) | 23, 253, 280, 523, 685, 801, 1010, 1293, 1513 |
| PspPPI | RGGWCCY | 1 cut(s) | 685 |
| PspXI | VCTCGAGB | 1 cut(s) | 569 |
| PstNI | CAGNNNCTG | 2 cut(s) | 56, 688 |
| PsuI | RGATCY | 1 cut(s) | 774 |
| PteI | GCGCGC | 1 cut(s) | 1621 |
| RsaI | GTAC | 2 cut(s) | 1135, 1316 |
| RsaNI | GTAC | 2 cut(s) | 1134, 1315 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1572 |
| SaqAI | TTAA | 2 cut(s) | 450, 888 |
| Sau3AI | GATC | 4 cut(s) | 558, 700, 742, 774 |
| Sau96I | GGNCC | 9 cut(s) | 23, 253, 280, 523, 685, 801, 1010, 1293, 1513 |
| SchI | GAGTC | 2 cut(s) | 561, 1106 |
| ScrFI | CCNGG | 9 cut(s) | 218, 422, 512, 532, 533, 689, 842, 1264, 1383 |
| SduI | GDGCHC | 5 cut(s) | 108, 193, 1072, 1174, 1579 |
| SfaNI | GCATC | 4 cut(s) | 53, 631, 640, 1004 |
| SfoI | GGCGCC | 1 cut(s) | 318 |
| Sfr274I | CTCGAG | 1 cut(s) | 569 |
| SinI | GGWCC | 5 cut(s) | 253, 523, 685, 801, 1293 |
| SlaI | CTCGAG | 1 cut(s) | 569 |
| SmaI | CCCGGG | 1 cut(s) | 533 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1572 |
| SmlI | CTYRAG | 4 cut(s) | 173, 569, 821, 1165 |
| SmoI | CTYRAG | 4 cut(s) | 173, 569, 821, 1165 |
| SphI | GCATGC | 1 cut(s) | 1560 |
| Sse9I | AATT | 3 cut(s) | 429, 662, 1282 |
| SspDI | GGCGCC | 1 cut(s) | 316 |
| SspMI | CTAG | 2 cut(s) | 798, 1269 |
| StyD4I | CCNGG | 9 cut(s) | 216, 420, 510, 530, 531, 687, 840, 1262, 1381 |
| StyI | CCWWGG | 5 cut(s) | 655, 942, 1214, 1551, 1696 |
| TaaI | ACNGT | 6 cut(s) | 247, 507, 638, 894, 1319, 1475 |
| TaiI | ACGT | 2 cut(s) | 862, 887 |
| TaqI | TCGA | 3 cut(s) | 570, 981, 1196 |
| TasI | AATT | 3 cut(s) | 429, 662, 1282 |
| Tru1I | TTAA | 2 cut(s) | 450, 888 |
| Tru9I | TTAA | 2 cut(s) | 450, 888 |
| TscAI | CASTG | 3 cut(s) | 90, 162, 266 |
| TseFI | GTSAC | 7 cut(s) | 157, 199, 211, 326, 832, 1229, 1441 |
| TseI | GCWGC | 6 cut(s) | 4, 77, 88, 496, 515, 1055 |
| Tsp45I | GTSAC | 7 cut(s) | 157, 199, 211, 326, 832, 1229, 1441 |
| TspDTI | ATGAA | 1 cut(s) | 1331 |
| TspGWI | ACGGA | 1 cut(s) | 793 |
| TspMI | CCCGGG | 1 cut(s) | 531 |
| TspRI | CASTG | 3 cut(s) | 90, 162, 266 |
| VpaK11BI | GGWCC | 5 cut(s) | 253, 523, 685, 801, 1293 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 736 |
| XceI | RCATGY | 1 cut(s) | 1560 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 922, 949 |
| XhoI | CTCGAG | 1 cut(s) | 569 |
| XmaI | CCCGGG | 1 cut(s) | 531 |
| XmiI | GTMKAC | 1 cut(s) | 225 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1534 |
| XspI | CTAG | 2 cut(s) | 798, 1269 |