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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 3 cut(s) | 379, 517, 589 |
| AccII | CGCG | 1 cut(s) | 338 |
| AclWI | GGATC | 8 cut(s) | 12, 24, 37, 63, 161, 334, 657, 676 |
| AcoI | YGGCCR | 1 cut(s) | 272 |
| AcsI | RAATTY | 2 cut(s) | 281, 356 |
| AcuI | CTGAAG | 2 cut(s) | 170, 671 |
| AdeI | CACNNNGTG | 1 cut(s) | 481 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 52, 112, 292, 588, 691 |
| AgsI | TTSAA | 4 cut(s) | 215, 324, 499, 646 |
| AjiI | CACGTC | 1 cut(s) | 613 |
| AjnI | CCWGG | 1 cut(s) | 617 |
| AleI | CACNNNNGTG | 2 cut(s) | 126, 716 |
| AluBI | AGCT | 5 cut(s) | 235, 243, 300, 444, 571 |
| AluI | AGCT | 5 cut(s) | 235, 243, 300, 444, 571 |
| Alw21I | GWGCWC | 1 cut(s) | 133 |
| Alw26I | GTCTC | 2 cut(s) | 172, 619 |
| AlwI | GGATC | 8 cut(s) | 12, 24, 37, 63, 161, 334, 657, 676 |
| Ama87I | CYCGRG | 3 cut(s) | 244, 383, 507 |
| AoxI | GGCC | 4 cut(s) | 272, 331, 394, 447 |
| ApeKI | GCWGC | 6 cut(s) | 472, 502, 551, 564, 701, 727 |
| ApoI | RAATTY | 2 cut(s) | 281, 356 |
| AspLEI | GCGC | 1 cut(s) | 414 |
| AspS9I | GGNCC | 1 cut(s) | 592 |
| AsuHPI | GGTGA | 3 cut(s) | 28, 703, 730 |
| AvaI | CYCGRG | 3 cut(s) | 244, 383, 507 |
| AvaII | GGWCC | 1 cut(s) | 592 |
| AxyI | CCTNAGG | 1 cut(s) | 328 |
| BauI | CACGAG | 1 cut(s) | 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 133 |
| BbvI | GCAGC | 6 cut(s) | 459, 514, 538, 576, 688, 714 |
| BceAI | ACGGC | 2 cut(s) | 407, 566 |
| BciT130I | CCWGG | 1 cut(s) | 619 |
| BclI | TGATCA | 2 cut(s) | 427, 607 |
| BcoDI | GTCTC | 2 cut(s) | 172, 619 |
| BfaI | CTAG | 3 cut(s) | 398, 596, 623 |
| BfmI | CTRYAG | 2 cut(s) | 238, 728 |
| Bme1390I | CCNGG | 1 cut(s) | 619 |
| Bme18I | GGWCC | 1 cut(s) | 592 |
| BmeT110I | CYCGRG | 3 cut(s) | 244, 383, 507 |
| BmgBI | CACGTC | 1 cut(s) | 613 |
| BmgT120I | GGNCC | 1 cut(s) | 592 |
| BmiI | GGNNCC | 1 cut(s) | 593 |
| BmrFI | CCNGG | 1 cut(s) | 619 |
| BmsI | GCATC | 2 cut(s) | 466, 538 |
| BpmI | CTGGAG | 2 cut(s) | 196, 601 |
| Bpu10I | CCTNAGC | 1 cut(s) | 663 |
| BpuEI | CTTGAG | 2 cut(s) | 179, 322 |
| BsaJI | CCNNGG | 1 cut(s) | 714 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 52, 112, 292, 588, 691 |
| Bse1I | ACTGG | 1 cut(s) | 213 |
| Bse21I | CCTNAGG | 1 cut(s) | 328 |
| BseBI | CCWGG | 1 cut(s) | 619 |
| BseDI | CCNNGG | 1 cut(s) | 714 |
| BseGI | GGATG | 2 cut(s) | 19, 562 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 52, 112, 292, 588, 691 |
| BseMII | CTCAG | 1 cut(s) | 101 |
| BseNI | ACTGG | 1 cut(s) | 213 |
| BseRI | GAGGAG | 2 cut(s) | 75, 545 |
| BseXI | GCAGC | 6 cut(s) | 459, 514, 538, 576, 688, 714 |
| BsgI | GTGCAG | 1 cut(s) | 458 |
| Bsh1236I | CGCG | 1 cut(s) | 338 |
| Bsh1285I | CGRYCG | 4 cut(s) | 53, 113, 138, 420 |
| BshFI | GGCC | 4 cut(s) | 274, 333, 396, 449 |
| BsiEI | CGRYCG | 4 cut(s) | 53, 113, 138, 420 |
| BsiHKAI | GWGCWC | 1 cut(s) | 133 |
| BsiHKCI | CYCGRG | 3 cut(s) | 244, 383, 507 |
| BsiSI | CCGG | 2 cut(s) | 275, 293 |
| BslFI | GGGAC | 1 cut(s) | 605 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 52, 112, 292, 588, 691 |
| BsmAI | GTCTC | 2 cut(s) | 172, 619 |
| BsmBI | CGTCTC | 1 cut(s) | 619 |
| BsmFI | GGGAC | 1 cut(s) | 605 |
| BsnI | GGCC | 4 cut(s) | 274, 333, 396, 449 |
| BsoBI | CYCGRG | 3 cut(s) | 244, 383, 507 |
| Bsp1286I | GDGCHC | 1 cut(s) | 133 |
| Bsp68I | TCGCGA | 1 cut(s) | 338 |
| BspANI | GGCC | 4 cut(s) | 274, 333, 396, 449 |
| BspCNI | CTCAG | 1 cut(s) | 100 |
| BspFNI | CGCG | 1 cut(s) | 338 |
| BspLI | GGNNCC | 1 cut(s) | 593 |
| BspMAI | CTGCAG | 1 cut(s) | 732 |
| BspPI | GGATC | 8 cut(s) | 12, 24, 37, 63, 161, 334, 657, 676 |
| BsrBI | CCGCTC | 3 cut(s) | 379, 517, 589 |
| BsrI | ACTGG | 1 cut(s) | 213 |
| BssECI | CCNNGG | 1 cut(s) | 714 |
| BssSI | CACGAG | 1 cut(s) | 476 |
| Bst2BI | CACGAG | 1 cut(s) | 476 |
| Bst2UI | CCWGG | 1 cut(s) | 619 |
| Bst4CI | ACNGT | 3 cut(s) | 51, 111, 545 |
| Bst6I | CTCTTC | 1 cut(s) | 716 |
| BstC8I | GCNNGC | 3 cut(s) | 298, 377, 569 |
| BstDEI | CTNAG | 4 cut(s) | 87, 328, 524, 663 |
| BstF5I | GGATG | 2 cut(s) | 19, 562 |
| BstFNI | CGCG | 1 cut(s) | 338 |
| BstHHI | GCGC | 1 cut(s) | 414 |
| BstMAI | GTCTC | 2 cut(s) | 172, 619 |
| BstMCI | CGRYCG | 4 cut(s) | 53, 113, 138, 420 |
| BstNI | CCWGG | 1 cut(s) | 619 |
| BstSCI | CCNGG | 1 cut(s) | 617 |
| BstSFI | CTRYAG | 2 cut(s) | 238, 728 |
| BstUI | CGCG | 1 cut(s) | 338 |
| BstV1I | GCAGC | 6 cut(s) | 459, 514, 538, 576, 688, 714 |
| BstX2I | RGATCY | 3 cut(s) | 42, 55, 681 |
| BstYI | RGATCY | 3 cut(s) | 42, 55, 681 |
| Bsu36I | CCTNAGG | 1 cut(s) | 328 |
| BsuRI | GGCC | 4 cut(s) | 274, 333, 396, 449 |
| BtrI | CACGTC | 1 cut(s) | 613 |
| BtsCI | GGATG | 2 cut(s) | 19, 562 |
| BtsIMutI | CAGTG | 1 cut(s) | 206 |
| BtuMI | TCGCGA | 1 cut(s) | 338 |
| Cac8I | GCNNGC | 3 cut(s) | 298, 377, 569 |
| CfoI | GCGC | 1 cut(s) | 414 |
| Cfr13I | GGNCC | 1 cut(s) | 592 |
| CviAII | CATG | 1 cut(s) | 487 |
| DdeI | CTNAG | 4 cut(s) | 87, 328, 524, 663 |
| DraIII | CACNNNGTG | 1 cut(s) | 481 |
| EaeI | YGGCCR | 1 cut(s) | 272 |
| Eam1104I | CTCTTC | 1 cut(s) | 716 |
| EarI | CTCTTC | 1 cut(s) | 716 |
| EciI | GGCGGA | 1 cut(s) | 142 |
| Eco147I | AGGCCT | 1 cut(s) | 333 |
| Eco32I | GATATC | 1 cut(s) | 251 |
| Eco47I | GGWCC | 1 cut(s) | 592 |
| Eco57I | CTGAAG | 2 cut(s) | 170, 671 |
| Eco81I | CCTNAGG | 1 cut(s) | 328 |
| Eco88I | CYCGRG | 3 cut(s) | 244, 383, 507 |
| EcoO109I | RGGNCCY | 1 cut(s) | 592 |
| EcoRI | GAATTC | 1 cut(s) | 356 |
| EcoRII | CCWGG | 1 cut(s) | 617 |
| EcoRV | GATATC | 1 cut(s) | 251 |
| Esp3I | CGTCTC | 1 cut(s) | 619 |
| FaeI | CATG | 1 cut(s) | 490 |
| FaiI | YATR | 5 cut(s) | 96, 98, 410, 488, 635 |
| FaqI | GGGAC | 1 cut(s) | 605 |
| FatI | CATG | 1 cut(s) | 486 |
| FauI | CCCGC | 2 cut(s) | 582, 684 |
| FbaI | TGATCA | 2 cut(s) | 427, 607 |
| FokI | GGATG | 2 cut(s) | 6, 569 |
| FspBI | CTAG | 3 cut(s) | 398, 596, 623 |
| GlaI | GCGC | 1 cut(s) | 413 |
| GsuI | CTGGAG | 2 cut(s) | 196, 601 |
| HaeIII | GGCC | 4 cut(s) | 274, 333, 396, 449 |
| HapII | CCGG | 2 cut(s) | 275, 293 |
| HhaI | GCGC | 1 cut(s) | 414 |
| Hin1II | CATG | 1 cut(s) | 490 |
| Hin6I | GCGC | 1 cut(s) | 412 |
| HinP1I | GCGC | 1 cut(s) | 412 |
| HinfI | GANTC | 5 cut(s) | 65, 116, 218, 289, 695 |
| HpaII | CCGG | 2 cut(s) | 275, 293 |
| HphI | GGTGA | 3 cut(s) | 28, 703, 730 |
| Hpy166II | GTNNAC | 1 cut(s) | 206 |
| Hpy188I | TCNGA | 6 cut(s) | 55, 90, 107, 115, 135, 189 |
| Hpy8I | GTNNAC | 1 cut(s) | 206 |
| Hpy99I | CGWCG | 4 cut(s) | 111, 143, 496, 581 |
| HpyAV | CCTTC | 5 cut(s) | 354, 395, 640, 667, 695 |
| HpyCH4III | ACNGT | 3 cut(s) | 51, 111, 545 |
| HpyCH4IV | ACGT | 3 cut(s) | 141, 494, 612 |
| HpyCH4V | TGCA | 2 cut(s) | 475, 730 |
| HpyF3I | CTNAG | 4 cut(s) | 87, 328, 524, 663 |
| HpySE526I | ACGT | 3 cut(s) | 141, 494, 612 |
| Hsp92II | CATG | 1 cut(s) | 490 |
| HspAI | GCGC | 1 cut(s) | 412 |
| Ksp22I | TGATCA | 2 cut(s) | 427, 607 |
| LmnI | GCTCC | 1 cut(s) | 136 |
| Lsp1109I | GCAGC | 6 cut(s) | 459, 514, 538, 576, 688, 714 |
| LweI | GCATC | 2 cut(s) | 466, 538 |
| MaeI | CTAG | 3 cut(s) | 398, 596, 623 |
| MaeII | ACGT | 3 cut(s) | 141, 494, 612 |
| MaeIII | GTNAC | 1 cut(s) | 709 |
| MbiI | CCGCTC | 3 cut(s) | 379, 517, 589 |
| MboII | GAAGA | 3 cut(s) | 50, 176, 733 |
| MflI | RGATCY | 3 cut(s) | 42, 55, 681 |
| MhlI | GDGCHC | 1 cut(s) | 133 |
| MluCI | AATT | 4 cut(s) | 30, 281, 356, 735 |
| MlyI | GAGTC | 1 cut(s) | 704 |
| MmeI | TCCRAC | 4 cut(s) | 33, 70, 93, 130 |
| MnlI | CCTC | 9 cut(s) | 33, 96, 160, 344, 380, 472, 523, 709, 717 |
| MseI | TTAA | 1 cut(s) | 314 |
| MslI | CAYNNNNRTG | 2 cut(s) | 126, 716 |
| MspA1I | CMGCKG | 1 cut(s) | 691 |
| MspI | CCGG | 2 cut(s) | 275, 293 |
| MspR9I | CCNGG | 1 cut(s) | 619 |
| MvaI | CCWGG | 1 cut(s) | 619 |
| MvnI | CGCG | 1 cut(s) | 338 |
| NlaIII | CATG | 1 cut(s) | 490 |
| NlaIV | GGNNCC | 1 cut(s) | 593 |
| NmeAIII | GCCGAG | 1 cut(s) | 425 |
| NmuCI | GTSAC | 1 cut(s) | 709 |
| NruI | TCGCGA | 1 cut(s) | 338 |
| OliI | CACNNNNGTG | 2 cut(s) | 126, 716 |
| PaeR7I | CTCGAG | 1 cut(s) | 244 |
| PceI | AGGCCT | 1 cut(s) | 333 |
| PfeI | GAWTC | 4 cut(s) | 65, 116, 218, 289 |
| Ple19I | CGATCG | 1 cut(s) | 138 |
| PleI | GAGTC | 1 cut(s) | 703 |
| PpsI | GAGTC | 1 cut(s) | 703 |
| PpuMI | RGGWCCY | 1 cut(s) | 592 |
| Psp5II | RGGWCCY | 1 cut(s) | 592 |
| Psp6I | CCWGG | 1 cut(s) | 617 |
| PspGI | CCWGG | 1 cut(s) | 617 |
| PspN4I | GGNNCC | 1 cut(s) | 593 |
| PspPI | GGNCC | 1 cut(s) | 592 |
| PspPPI | RGGWCCY | 1 cut(s) | 592 |
| PstI | CTGCAG | 1 cut(s) | 732 |
| PsuI | RGATCY | 3 cut(s) | 42, 55, 681 |
| PvuI | CGATCG | 1 cut(s) | 138 |
| RruI | TCGCGA | 1 cut(s) | 338 |
| RseI | CAYNNNNRTG | 2 cut(s) | 126, 716 |
| SaqAI | TTAA | 1 cut(s) | 314 |
| Sau96I | GGNCC | 1 cut(s) | 592 |
| SchI | GAGTC | 1 cut(s) | 704 |
| ScrFI | CCNGG | 1 cut(s) | 619 |
| SduI | GDGCHC | 1 cut(s) | 133 |
| SfaNI | GCATC | 2 cut(s) | 466, 538 |
| SfcI | CTRYAG | 2 cut(s) | 238, 728 |
| Sfr274I | CTCGAG | 1 cut(s) | 244 |
| SinI | GGWCC | 1 cut(s) | 592 |
| SlaI | CTCGAG | 1 cut(s) | 244 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 126, 716 |
| SmlI | CTYRAG | 3 cut(s) | 194, 244, 301 |
| SmoI | CTYRAG | 3 cut(s) | 194, 244, 301 |
| Sse9I | AATT | 4 cut(s) | 30, 281, 356, 735 |
| SseBI | AGGCCT | 1 cut(s) | 333 |
| SspMI | CTAG | 3 cut(s) | 398, 596, 623 |
| StuI | AGGCCT | 1 cut(s) | 333 |
| StyD4I | CCNGG | 1 cut(s) | 617 |
| TaaI | ACNGT | 3 cut(s) | 51, 111, 545 |
| TaiI | ACGT | 3 cut(s) | 144, 497, 615 |
| TaqI | TCGA | 5 cut(s) | 138, 165, 245, 309, 416 |
| TasI | AATT | 4 cut(s) | 30, 281, 356, 735 |
| TauI | GCSGC | 4 cut(s) | 382, 396, 520, 662 |
| TfiI | GAWTC | 4 cut(s) | 65, 116, 218, 289 |
| Tru1I | TTAA | 1 cut(s) | 314 |
| Tru9I | TTAA | 1 cut(s) | 314 |
| TscAI | CASTG | 1 cut(s) | 213 |
| TseFI | GTSAC | 1 cut(s) | 709 |
| TseI | GCWGC | 6 cut(s) | 472, 502, 551, 564, 701, 727 |
| Tsp45I | GTSAC | 1 cut(s) | 709 |
| TspDTI | ATGAA | 2 cut(s) | 113, 475 |
| TspGWI | ACGGA | 2 cut(s) | 454, 565 |
| TspRI | CASTG | 1 cut(s) | 213 |
| VpaK11BI | GGWCC | 1 cut(s) | 592 |
| XapI | RAATTY | 2 cut(s) | 281, 356 |
| XhoI | CTCGAG | 1 cut(s) | 244 |
| XspI | CTAG | 3 cut(s) | 398, 596, 623 |