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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 79 |
| AatII | GACGTC | 1 cut(s) | 1344 |
| Acc36I | ACCTGC | 1 cut(s) | 79 |
| Acc65I | GGTACC | 2 cut(s) | 115, 668 |
| AccB1I | GGYRCC | 4 cut(s) | 115, 668, 843, 1385 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 397 |
| AccBSI | CCGCTC | 3 cut(s) | 680, 994, 1379 |
| AccI | GTMKAC | 2 cut(s) | 786, 972 |
| AccII | CGCG | 5 cut(s) | 185, 291, 296, 318, 504 |
| AclWI | GGATC | 2 cut(s) | 1050, 1069 |
| AcoI | YGGCCR | 1 cut(s) | 457 |
| AcsI | RAATTY | 1 cut(s) | 133 |
| AcuI | CTGAAG | 3 cut(s) | 1058, 1064, 1283 |
| AcyI | GRCGYC | 3 cut(s) | 844, 1341, 1397 |
| AfaI | GTAC | 3 cut(s) | 117, 670, 1205 |
| AflIII | ACRYGT | 2 cut(s) | 147, 294 |
| AgsI | TTSAA | 1 cut(s) | 139 |
| AjnI | CCWGG | 2 cut(s) | 108, 1437 |
| AleI | CACNNNNGTG | 1 cut(s) | 1391 |
| AluBI | AGCT | 6 cut(s) | 223, 826, 901, 964, 1015, 1148 |
| AluI | AGCT | 6 cut(s) | 223, 826, 901, 964, 1015, 1148 |
| Alw26I | GTCTC | 5 cut(s) | 156, 410, 734, 1012, 1348 |
| AlwI | GGATC | 2 cut(s) | 1050, 1069 |
| Ama87I | CYCGRG | 4 cut(s) | 675, 869, 989, 1374 |
| AoxI | GGCC | 8 cut(s) | 366, 457, 578, 653, 778, 888, 919, 1362 |
| ApaI | GGGCCC | 1 cut(s) | 582 |
| ApeKI | GCWGC | 7 cut(s) | 78, 353, 430, 509, 544, 801, 1241 |
| ApoI | RAATTY | 1 cut(s) | 133 |
| AseI | ATTAAT | 1 cut(s) | 327 |
| Asp718I | GGTACC | 2 cut(s) | 115, 668 |
| AspLEI | GCGC | 6 cut(s) | 20, 37, 72, 320, 562, 846 |
| AspS9I | GGNCC | 9 cut(s) | 165, 313, 367, 526, 578, 579, 779, 919, 985 |
| AsuHPI | GGTGA | 8 cut(s) | 103, 415, 434, 803, 1123, 1301, 1405, 1478 |
| AsuNHI | GCTAGC | 1 cut(s) | 757 |
| AvaI | CYCGRG | 4 cut(s) | 675, 869, 989, 1374 |
| AvaII | GGWCC | 4 cut(s) | 165, 313, 526, 985 |
| BaeGI | GKGCMC | 1 cut(s) | 582 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 107, 140 |
| BalI | TGGCCA | 1 cut(s) | 459 |
| BanI | GGYRCC | 4 cut(s) | 115, 668, 843, 1385 |
| BanII | GRGCYC | 2 cut(s) | 582, 1406 |
| BbsI | GAAGAC | 1 cut(s) | 735 |
| BbvCI | CCTCAGC | 1 cut(s) | 1107 |
| BbvI | GCAGC | 7 cut(s) | 65, 340, 417, 496, 556, 788, 1228 |
| BccI | CCATC | 9 cut(s) | 8, 188, 304, 704, 752, 844, 940, 1213, 1376 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 281, 315, 1150, 1184 |
| BciT130I | CCWGG | 2 cut(s) | 110, 1439 |
| BclI | TGATCA | 1 cut(s) | 1423 |
| BcoDI | GTCTC | 5 cut(s) | 156, 410, 734, 1012, 1348 |
| BfaI | CTAG | 4 cut(s) | 362, 758, 1016, 1416 |
| BfmI | CTRYAG | 3 cut(s) | 30, 79, 354 |
| BfoI | RGCGCY | 5 cut(s) | 21, 38, 73, 563, 847 |
| BfuAI | ACCTGC | 1 cut(s) | 79 |
| BglII | AGATCT | 1 cut(s) | 1418 |
| Bme1390I | CCNGG | 2 cut(s) | 110, 1439 |
| Bme18I | GGWCC | 4 cut(s) | 165, 313, 526, 985 |
| BmeT110I | CYCGRG | 4 cut(s) | 675, 869, 989, 1374 |
| BmgT120I | GGNCC | 9 cut(s) | 165, 313, 367, 526, 578, 579, 779, 919, 985 |
| BmrFI | CCNGG | 2 cut(s) | 110, 1439 |
| BmsI | GCATC | 4 cut(s) | 426, 460, 931, 940 |
| BmtI | GCTAGC | 1 cut(s) | 761 |
| BpiI | GAAGAC | 1 cut(s) | 735 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 992, 1024 |
| BpmI | CTGGAG | 2 cut(s) | 1142, 1481 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1056, 1107, 1488 |
| BpuEI | CTTGAG | 1 cut(s) | 118 |
| BsaHI | GRCGYC | 3 cut(s) | 844, 1341, 1397 |
| BsaI | GGTCTC | 1 cut(s) | 734 |
| BsaWI | WCCGGW | 1 cut(s) | 42 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 332, 362, 1309, 1339 |
| Bse118I | RCCGGY | 1 cut(s) | 4 |
| Bse1I | ACTGG | 1 cut(s) | 614 |
| BseBI | CCWGG | 2 cut(s) | 110, 1439 |
| BseGI | GGATG | 2 cut(s) | 955, 1387 |
| BseMII | CTCAG | 7 cut(s) | 263, 405, 729, 1098, 1140, 1325, 1479 |
| BseNI | ACTGG | 1 cut(s) | 614 |
| BseSI | GKGCMC | 1 cut(s) | 582 |
| BseXI | GCAGC | 7 cut(s) | 65, 340, 417, 496, 556, 788, 1228 |
| BseYI | CCCAGC | 2 cut(s) | 369, 1442 |
| BsgI | GTGCAG | 1 cut(s) | 563 |
| Bsh1236I | CGCG | 5 cut(s) | 185, 291, 296, 318, 504 |
| Bsh1285I | CGRYCG | 1 cut(s) | 502 |
| BshFI | GGCC | 8 cut(s) | 368, 459, 580, 655, 780, 890, 921, 1364 |
| BshNI | GGYRCC | 4 cut(s) | 115, 668, 843, 1385 |
| BsiEI | CGRYCG | 1 cut(s) | 502 |
| BsiHKCI | CYCGRG | 4 cut(s) | 675, 869, 989, 1374 |
| BsiSI | CCGG | 3 cut(s) | 5, 43, 1298 |
| BslFI | GGGAC | 3 cut(s) | 178, 512, 998 |
| BsmAI | GTCTC | 5 cut(s) | 156, 410, 734, 1012, 1348 |
| BsmBI | CGTCTC | 1 cut(s) | 1348 |
| BsmFI | GGGAC | 3 cut(s) | 178, 512, 998 |
| BsnI | GGCC | 8 cut(s) | 368, 459, 580, 655, 780, 890, 921, 1364 |
| Bso31I | GGTCTC | 1 cut(s) | 734 |
| BsoBI | CYCGRG | 4 cut(s) | 675, 869, 989, 1374 |
| Bsp120I | GGGCCC | 1 cut(s) | 578 |
| Bsp1286I | GDGCHC | 2 cut(s) | 582, 1406 |
| Bsp143I | GATC | 4 cut(s) | 1042, 1074, 1418, 1423 |
| Bsp19I | CCATGG | 2 cut(s) | 474, 1389 |
| BspANI | GGCC | 8 cut(s) | 368, 459, 580, 655, 780, 890, 921, 1364 |
| BspCNI | CTCAG | 7 cut(s) | 264, 406, 730, 1099, 1141, 1324, 1480 |
| BspFNI | CGCG | 5 cut(s) | 185, 291, 296, 318, 504 |
| BspMAI | CTGCAG | 2 cut(s) | 83, 358 |
| BspMI | ACCTGC | 1 cut(s) | 79 |
| BspOI | GCTAGC | 1 cut(s) | 761 |
| BspPI | GGATC | 2 cut(s) | 1050, 1069 |
| BspT107I | GGYRCC | 4 cut(s) | 115, 668, 843, 1385 |
| BspTNI | GGTCTC | 1 cut(s) | 734 |
| BsrBI | CCGCTC | 3 cut(s) | 680, 994, 1379 |
| BsrFI | RCCGGY | 1 cut(s) | 4 |
| BsrI | ACTGG | 1 cut(s) | 614 |
| BssAI | RCCGGY | 1 cut(s) | 4 |
| BssMI | GATC | 4 cut(s) | 1042, 1074, 1418, 1423 |
| BssNI | GRCGYC | 3 cut(s) | 844, 1341, 1397 |
| BssT1I | CCWWGG | 6 cut(s) | 73, 155, 474, 606, 927, 1389 |
| Bst2UI | CCWGG | 2 cut(s) | 110, 1439 |
| Bst4CI | ACNGT | 3 cut(s) | 61, 791, 797 |
| Bst6I | CTCTTC | 4 cut(s) | 717, 759, 1109, 1464 |
| BstACI | GRCGYC | 3 cut(s) | 844, 1341, 1397 |
| BstC8I | GCNNGC | 8 cut(s) | 286, 564, 759, 778, 824, 828, 903, 1212 |
| BstDSI | CCRYGG | 3 cut(s) | 474, 502, 1389 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 851, 926, 1037, 1082 |
| BstF5I | GGATG | 2 cut(s) | 955, 1387 |
| BstFNI | CGCG | 5 cut(s) | 185, 291, 296, 318, 504 |
| BstH2I | RGCGCY | 5 cut(s) | 21, 38, 73, 563, 847 |
| BstHHI | GCGC | 6 cut(s) | 20, 37, 72, 320, 562, 846 |
| BstKTI | GATC | 4 cut(s) | 1045, 1077, 1421, 1426 |
| BstMAI | GTCTC | 5 cut(s) | 156, 410, 734, 1012, 1348 |
| BstMBI | GATC | 4 cut(s) | 1042, 1074, 1418, 1423 |
| BstMCI | CGRYCG | 1 cut(s) | 502 |
| BstNI | CCWGG | 2 cut(s) | 110, 1439 |
| BstNSI | RCATGY | 3 cut(s) | 151, 349, 1007 |
| BstSCI | CCNGG | 2 cut(s) | 108, 1437 |
| BstSFI | CTRYAG | 3 cut(s) | 30, 79, 354 |
| BstSLI | GKGCMC | 1 cut(s) | 582 |
| BstUI | CGCG | 5 cut(s) | 185, 291, 296, 318, 504 |
| BstV1I | GCAGC | 7 cut(s) | 65, 340, 417, 496, 556, 788, 1228 |
| BstV2I | GAAGAC | 1 cut(s) | 735 |
| BstX2I | RGATCY | 2 cut(s) | 1074, 1418 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 310 |
| BstYI | RGATCY | 2 cut(s) | 1074, 1418 |
| BsuRI | GGCC | 8 cut(s) | 368, 459, 580, 655, 780, 890, 921, 1364 |
| BtgI | CCRYGG | 3 cut(s) | 474, 502, 1389 |
| BtgZI | GCGATG | 4 cut(s) | 166, 323, 729, 959 |
| BtsCI | GGATG | 2 cut(s) | 955, 1387 |
| BtsI | GCAGTG | 1 cut(s) | 88 |
| BtsIMutI | CAGTG | 2 cut(s) | 88, 621 |
| BveI | ACCTGC | 1 cut(s) | 79 |
| Cac8I | GCNNGC | 8 cut(s) | 286, 564, 759, 778, 824, 828, 903, 1212 |
| CfoI | GCGC | 6 cut(s) | 20, 37, 72, 320, 562, 846 |
| Cfr10I | RCCGGY | 1 cut(s) | 4 |
| Cfr13I | GGNCC | 9 cut(s) | 165, 313, 367, 526, 578, 579, 779, 919, 985 |
| Cfr42I | CCGCGG | 1 cut(s) | 505 |
| CseI | GACGC | 3 cut(s) | 302, 1283, 1405 |
| Csp6I | GTAC | 3 cut(s) | 116, 669, 1204 |
| CviAII | CATG | 7 cut(s) | 148, 346, 475, 1004, 1216, 1360, 1390 |
| CviQI | GTAC | 3 cut(s) | 116, 669, 1204 |
| DinI | GGCGCC | 1 cut(s) | 845 |
| DpnI | GATC | 4 cut(s) | 1044, 1076, 1420, 1425 |
| DpnII | GATC | 4 cut(s) | 1042, 1074, 1418, 1423 |
| EaeI | YGGCCR | 1 cut(s) | 457 |
| Eam1104I | CTCTTC | 4 cut(s) | 717, 759, 1109, 1464 |
| EarI | CTCTTC | 4 cut(s) | 717, 759, 1109, 1464 |
| EciI | GGCGGA | 3 cut(s) | 80, 920, 947 |
| Eco130I | CCWWGG | 6 cut(s) | 73, 155, 474, 606, 927, 1389 |
| Eco147I | AGGCCT | 1 cut(s) | 655 |
| Eco24I | GRGCYC | 2 cut(s) | 582, 1406 |
| Eco31I | GGTCTC | 1 cut(s) | 734 |
| Eco47I | GGWCC | 4 cut(s) | 165, 313, 526, 985 |
| Eco57I | CTGAAG | 3 cut(s) | 1058, 1064, 1283 |
| Eco88I | CYCGRG | 4 cut(s) | 675, 869, 989, 1374 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 851, 926, 1037, 1082 |
| EcoO109I | RGGNCCY | 6 cut(s) | 165, 526, 579, 779, 919, 985 |
| EcoRII | CCWGG | 2 cut(s) | 108, 1437 |
| EcoT14I | CCWWGG | 6 cut(s) | 73, 155, 474, 606, 927, 1389 |
| EcoT38I | GRGCYC | 2 cut(s) | 582, 1406 |
| EgeI | GGCGCC | 1 cut(s) | 845 |
| EheI | GGCGCC | 1 cut(s) | 845 |
| ErhI | CCWWGG | 6 cut(s) | 73, 155, 474, 606, 927, 1389 |
| Esp3I | CGTCTC | 1 cut(s) | 1348 |
| FaeI | CATG | 7 cut(s) | 151, 349, 478, 1007, 1219, 1363, 1393 |
| FaqI | GGGAC | 3 cut(s) | 178, 512, 998 |
| FatI | CATG | 7 cut(s) | 147, 345, 474, 1003, 1215, 1359, 1389 |
| FauI | CCCGC | 5 cut(s) | 153, 178, 478, 497, 571 |
| FauNDI | CATATG | 1 cut(s) | 642 |
| FbaI | TGATCA | 1 cut(s) | 1423 |
| FblI | GTMKAC | 2 cut(s) | 786, 972 |
| FokI | GGATG | 2 cut(s) | 962, 1394 |
| FriOI | GRGCYC | 2 cut(s) | 582, 1406 |
| FspBI | CTAG | 4 cut(s) | 362, 758, 1016, 1416 |
| GlaI | GCGC | 6 cut(s) | 19, 36, 71, 319, 561, 845 |
| GsaI | CCCAGC | 2 cut(s) | 373, 1446 |
| GsuI | CTGGAG | 2 cut(s) | 1142, 1481 |
| HaeII | RGCGCY | 5 cut(s) | 21, 38, 73, 563, 847 |
| HaeIII | GGCC | 8 cut(s) | 368, 459, 580, 655, 780, 890, 921, 1364 |
| HapII | CCGG | 3 cut(s) | 5, 43, 1298 |
| HgaI | GACGC | 3 cut(s) | 302, 1283, 1405 |
| HhaI | GCGC | 6 cut(s) | 20, 37, 72, 320, 562, 846 |
| Hin1I | GRCGYC | 3 cut(s) | 844, 1341, 1397 |
| Hin1II | CATG | 7 cut(s) | 151, 349, 478, 1007, 1219, 1363, 1393 |
| Hin6I | GCGC | 6 cut(s) | 18, 35, 70, 318, 560, 844 |
| HinP1I | GCGC | 6 cut(s) | 18, 35, 70, 318, 560, 844 |
| HincII | GTYRAC | 3 cut(s) | 57, 787, 973 |
| HindII | GTYRAC | 3 cut(s) | 57, 787, 973 |
| HinfI | GANTC | 6 cut(s) | 263, 418, 834, 1088, 1307, 1318 |
| HpaII | CCGG | 3 cut(s) | 5, 43, 1298 |
| HphI | GGTGA | 8 cut(s) | 103, 415, 434, 803, 1123, 1301, 1405, 1478 |
| Hpy166II | GTNNAC | 5 cut(s) | 57, 94, 493, 787, 973 |
| Hpy188I | TCNGA | 6 cut(s) | 244, 415, 690, 1339, 1423, 1428 |
| Hpy188III | TCNNGA | 4 cut(s) | 130, 871, 1142, 1487 |
| Hpy8I | GTNNAC | 5 cut(s) | 57, 94, 493, 787, 973 |
| Hpy99I | CGWCG | 4 cut(s) | 296, 788, 791, 977 |
| HpyAV | CCTTC | 7 cut(s) | 133, 580, 612, 1033, 1088, 1225, 1264 |
| HpyCH4III | ACNGT | 3 cut(s) | 61, 791, 797 |
| HpyCH4IV | ACGT | 3 cut(s) | 909, 975, 1341 |
| HpyCH4V | TGCA | 6 cut(s) | 81, 356, 544, 626, 646, 752 |
| HpySE526I | ACGT | 3 cut(s) | 909, 975, 1341 |
| Hsp92I | GRCGYC | 3 cut(s) | 844, 1341, 1397 |
| Hsp92II | CATG | 7 cut(s) | 151, 349, 478, 1007, 1219, 1363, 1393 |
| HspAI | GCGC | 6 cut(s) | 18, 35, 70, 318, 560, 844 |
| KasI | GGCGCC | 1 cut(s) | 843 |
| KpnI | GGTACC | 2 cut(s) | 119, 672 |
| Ksp22I | TGATCA | 1 cut(s) | 1423 |
| KspI | CCGCGG | 1 cut(s) | 505 |
| Kzo9I | GATC | 4 cut(s) | 1042, 1074, 1418, 1423 |
| LmnI | GCTCC | 4 cut(s) | 67, 220, 519, 634 |
| Lsp1109I | GCAGC | 7 cut(s) | 65, 340, 417, 496, 556, 788, 1228 |
| LweI | GCATC | 4 cut(s) | 426, 460, 931, 940 |
| MaeI | CTAG | 4 cut(s) | 362, 758, 1016, 1416 |
| MaeII | ACGT | 3 cut(s) | 909, 975, 1341 |
| MaeIII | GTNAC | 5 cut(s) | 275, 616, 791, 879, 1393 |
| MalI | GATC | 4 cut(s) | 1044, 1076, 1420, 1425 |
| MbiI | CCGCTC | 3 cut(s) | 680, 994, 1379 |
| MboI | GATC | 4 cut(s) | 1042, 1074, 1418, 1423 |
| MboII | GAAGA | 8 cut(s) | 703, 731, 734, 740, 776, 825, 1126, 1481 |
| MfeI | CAATTG | 1 cut(s) | 647 |
| MflI | RGATCY | 2 cut(s) | 1074, 1418 |
| MhlI | GDGCHC | 2 cut(s) | 582, 1406 |
| MlsI | TGGCCA | 1 cut(s) | 459 |
| MluCI | AATT | 2 cut(s) | 133, 647 |
| MluI | ACGCGT | 1 cut(s) | 294 |
| MluNI | TGGCCA | 1 cut(s) | 459 |
| Mly113I | GGCGCC | 1 cut(s) | 844 |
| MlyI | GAGTC | 3 cut(s) | 412, 828, 1312 |
| MmeI | TCCRAC | 3 cut(s) | 222, 612, 1392 |
| Mox20I | TGGCCA | 1 cut(s) | 459 |
| MscI | TGGCCA | 1 cut(s) | 459 |
| MseI | TTAA | 5 cut(s) | 125, 237, 327, 912, 1188 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1391 |
| Msp20I | TGGCCA | 1 cut(s) | 459 |
| MspA1I | CMGCKG | 6 cut(s) | 271, 504, 665, 1175, 1315, 1459 |
| MspI | CCGG | 3 cut(s) | 5, 43, 1298 |
| MspR9I | CCNGG | 2 cut(s) | 110, 1439 |
| MunI | CAATTG | 1 cut(s) | 647 |
| MvaI | CCWGG | 2 cut(s) | 110, 1439 |
| MvnI | CGCG | 5 cut(s) | 185, 291, 296, 318, 504 |
| NarI | GGCGCC | 1 cut(s) | 844 |
| NcoI | CCATGG | 2 cut(s) | 474, 1389 |
| NdeI | CATATG | 1 cut(s) | 642 |
| NdeII | GATC | 4 cut(s) | 1042, 1074, 1418, 1423 |
| NheI | GCTAGC | 1 cut(s) | 757 |
| NlaIII | CATG | 7 cut(s) | 151, 349, 478, 1007, 1219, 1363, 1393 |
| NmeAIII | GCCGAG | 2 cut(s) | 573, 1425 |
| NmuCI | GTSAC | 3 cut(s) | 616, 791, 1393 |
| NspI | RCATGY | 3 cut(s) | 151, 349, 1007 |
| OliI | CACNNNNGTG | 1 cut(s) | 1391 |
| PaeR7I | CTCGAG | 3 cut(s) | 675, 869, 989 |
| PaqCI | CACCTGC | 1 cut(s) | 79 |
| PceI | AGGCCT | 1 cut(s) | 655 |
| PciI | ACATGT | 1 cut(s) | 147 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 996 |
| PfeI | GAWTC | 3 cut(s) | 263, 1088, 1307 |
| PflFI | GACNNNGTC | 1 cut(s) | 1028 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 397 |
| PleI | GAGTC | 3 cut(s) | 412, 828, 1312 |
| PluTI | GGCGCC | 1 cut(s) | 847 |
| PpsI | GAGTC | 3 cut(s) | 412, 828, 1312 |
| PpuMI | RGGWCCY | 3 cut(s) | 165, 526, 985 |
| PscI | ACATGT | 1 cut(s) | 147 |
| PshBI | ATTAAT | 1 cut(s) | 327 |
| Psp5II | RGGWCCY | 3 cut(s) | 165, 526, 985 |
| Psp6I | CCWGG | 2 cut(s) | 108, 1437 |
| PspFI | CCCAGC | 2 cut(s) | 369, 1442 |
| PspGI | CCWGG | 2 cut(s) | 108, 1437 |
| PspOMI | GGGCCC | 1 cut(s) | 578 |
| PspPI | GGNCC | 9 cut(s) | 165, 313, 367, 526, 578, 579, 779, 919, 985 |
| PspPPI | RGGWCCY | 3 cut(s) | 165, 526, 985 |
| PspXI | VCTCGAGB | 2 cut(s) | 675, 989 |
| PstI | CTGCAG | 2 cut(s) | 83, 358 |
| PsuI | RGATCY | 2 cut(s) | 1074, 1418 |
| PsyI | GACNNNGTC | 1 cut(s) | 1028 |
| RsaI | GTAC | 3 cut(s) | 117, 670, 1205 |
| RsaNI | GTAC | 3 cut(s) | 116, 669, 1204 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1391 |
| SacII | CCGCGG | 1 cut(s) | 505 |
| SalI | GTCGAC | 2 cut(s) | 785, 971 |
| SaqAI | TTAA | 5 cut(s) | 125, 237, 327, 912, 1188 |
| Sau3AI | GATC | 4 cut(s) | 1042, 1074, 1418, 1423 |
| Sau96I | GGNCC | 9 cut(s) | 165, 313, 367, 526, 578, 579, 779, 919, 985 |
| SchI | GAGTC | 3 cut(s) | 412, 828, 1312 |
| ScrFI | CCNGG | 2 cut(s) | 110, 1439 |
| SduI | GDGCHC | 2 cut(s) | 582, 1406 |
| SfaNI | GCATC | 4 cut(s) | 426, 460, 931, 940 |
| SfcI | CTRYAG | 3 cut(s) | 30, 79, 354 |
| SfoI | GGCGCC | 1 cut(s) | 845 |
| Sfr274I | CTCGAG | 3 cut(s) | 675, 869, 989 |
| Sfr303I | CCGCGG | 1 cut(s) | 505 |
| SgrBI | CCGCGG | 1 cut(s) | 505 |
| SgrDI | CGTCGACG | 1 cut(s) | 785 |
| SinI | GGWCC | 4 cut(s) | 165, 313, 526, 985 |
| SlaI | CTCGAG | 3 cut(s) | 675, 869, 989 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1391 |
| SmlI | CTYRAG | 4 cut(s) | 97, 675, 869, 989 |
| SmoI | CTYRAG | 4 cut(s) | 97, 675, 869, 989 |
| Sse9I | AATT | 2 cut(s) | 133, 647 |
| SseBI | AGGCCT | 1 cut(s) | 655 |
| SspDI | GGCGCC | 1 cut(s) | 843 |
| SspMI | CTAG | 4 cut(s) | 362, 758, 1016, 1416 |
| StuI | AGGCCT | 1 cut(s) | 655 |
| StyD4I | CCNGG | 2 cut(s) | 108, 1437 |
| StyI | CCWWGG | 6 cut(s) | 73, 155, 474, 606, 927, 1389 |
| TaaI | ACNGT | 3 cut(s) | 61, 791, 797 |
| TaiI | ACGT | 3 cut(s) | 912, 978, 1344 |
| TaqI | TCGA | 9 cut(s) | 129, 209, 384, 498, 676, 786, 870, 972, 990 |
| TasI | AATT | 2 cut(s) | 133, 647 |
| TatI | WGTACW | 1 cut(s) | 1203 |
| TfiI | GAWTC | 3 cut(s) | 263, 1088, 1307 |
| Tru1I | TTAA | 5 cut(s) | 125, 237, 327, 912, 1188 |
| Tru9I | TTAA | 5 cut(s) | 125, 237, 327, 912, 1188 |
| TscAI | CASTG | 2 cut(s) | 88, 621 |
| TseFI | GTSAC | 3 cut(s) | 616, 791, 1393 |
| TseI | GCWGC | 7 cut(s) | 78, 353, 430, 509, 544, 801, 1241 |
| Tsp45I | GTSAC | 3 cut(s) | 616, 791, 1393 |
| TspDTI | ATGAA | 3 cut(s) | 674, 732, 1348 |
| TspRI | CASTG | 2 cut(s) | 88, 621 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1028 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 397 |
| VpaK11BI | GGWCC | 4 cut(s) | 165, 313, 526, 985 |
| VspI | ATTAAT | 1 cut(s) | 327 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 851, 926, 1037, 1082 |
| XapI | RAATTY | 1 cut(s) | 133 |
| XceI | RCATGY | 3 cut(s) | 151, 349, 1007 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 80, 187, 452, 898 |
| XhoI | CTCGAG | 3 cut(s) | 675, 869, 989 |
| XmiI | GTMKAC | 2 cut(s) | 786, 972 |
| XspI | CTAG | 4 cut(s) | 362, 758, 1016, 1416 |
| ZraI | GACGTC | 1 cut(s) | 1342 |