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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 301 |
| AccB1I | GGYRCC | 1 cut(s) | 971 |
| AccBSI | CCGCTC | 3 cut(s) | 574, 715, 727 |
| AccI | GTMKAC | 1 cut(s) | 473 |
| AccII | CGCG | 3 cut(s) | 62, 211, 288 |
| AcoI | YGGCCR | 3 cut(s) | 99, 783, 900 |
| AcuI | CTGAAG | 3 cut(s) | 203, 481, 797 |
| AcyI | GRCGYC | 2 cut(s) | 684, 972 |
| AdeI | CACNNNGTG | 1 cut(s) | 115 |
| AfaI | GTAC | 2 cut(s) | 355, 920 |
| AfeI | AGCGCT | 1 cut(s) | 880 |
| AflIII | ACRYGT | 1 cut(s) | 759 |
| AgsI | TTSAA | 2 cut(s) | 186, 806 |
| AjiI | CACGTC | 1 cut(s) | 337 |
| AjnI | CCWGG | 4 cut(s) | 363, 453, 543, 624 |
| AleI | CACNNNNGTG | 1 cut(s) | 212 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 399, 431 |
| AluBI | AGCT | 4 cut(s) | 439, 580, 638, 697 |
| AluI | AGCT | 4 cut(s) | 439, 580, 638, 697 |
| Alw21I | GWGCWC | 2 cut(s) | 97, 582 |
| Ama87I | CYCGRG | 1 cut(s) | 320 |
| Aor51HI | AGCGCT | 1 cut(s) | 880 |
| ApaI | GGGCCC | 1 cut(s) | 286 |
| ApeKI | GCWGC | 5 cut(s) | 34, 436, 769, 896, 905 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 810 |
| AspLEI | GCGC | 3 cut(s) | 135, 881, 974 |
| AspS9I | GGNCC | 4 cut(s) | 54, 282, 283, 622 |
| AsuC2I | CCSGG | 1 cut(s) | 280 |
| AsuHPI | GGTGA | 6 cut(s) | 38, 76, 142, 416, 416, 872 |
| AvaI | CYCGRG | 1 cut(s) | 320 |
| AvaII | GGWCC | 1 cut(s) | 54 |
| BaeGI | GKGCMC | 2 cut(s) | 286, 516 |
| BalI | TGGCCA | 1 cut(s) | 101 |
| BanI | GGYRCC | 1 cut(s) | 971 |
| BanII | GRGCYC | 2 cut(s) | 286, 582 |
| BauI | CACGAG | 1 cut(s) | 533 |
| BbsI | GAAGAC | 1 cut(s) | 270 |
| Bbv12I | GWGCWC | 2 cut(s) | 97, 582 |
| BbvCI | CCTCAGC | 1 cut(s) | 882 |
| BbvI | GCAGC | 5 cut(s) | 21, 448, 756, 883, 892 |
| BccI | CCATC | 1 cut(s) | 395 |
| BceAI | ACGGC | 7 cut(s) | 122, 179, 216, 464, 519, 876, 893 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 311, 345, 656, 690 |
| BciT130I | CCWGG | 4 cut(s) | 365, 455, 545, 626 |
| BcnI | CCSGG | 1 cut(s) | 280 |
| BfmI | CTRYAG | 1 cut(s) | 602 |
| BfoI | RGCGCY | 2 cut(s) | 882, 975 |
| BfuAI | ACCTGC | 1 cut(s) | 301 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 836 |
| Bme1390I | CCNGG | 5 cut(s) | 280, 365, 455, 545, 626 |
| Bme18I | GGWCC | 1 cut(s) | 54 |
| BmeT110I | CYCGRG | 1 cut(s) | 320 |
| BmgBI | CACGTC | 1 cut(s) | 337 |
| BmgT120I | GGNCC | 4 cut(s) | 54, 282, 283, 622 |
| BmiI | GGNNCC | 7 cut(s) | 55, 168, 283, 284, 315, 890, 973 |
| BmrFI | CCNGG | 5 cut(s) | 280, 365, 455, 545, 626 |
| BmsI | GCATC | 2 cut(s) | 560, 664 |
| BoxI | GACNNNNGTC | 1 cut(s) | 479 |
| BpiI | GAAGAC | 1 cut(s) | 270 |
| BpmI | CTGGAG | 2 cut(s) | 476, 743 |
| Bpu10I | CCTNAGC | 3 cut(s) | 581, 875, 882 |
| BpuMI | CCSGG | 1 cut(s) | 280 |
| BsaHI | GRCGYC | 2 cut(s) | 684, 972 |
| BsaJI | CCNNGG | 8 cut(s) | 80, 279, 321, 624, 688, 789, 840, 909 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 404, 434 |
| Bse118I | RCCGGY | 1 cut(s) | 968 |
| Bse1I | ACTGG | 2 cut(s) | 102, 726 |
| Bse3DI | GCAATG | 1 cut(s) | 135 |
| BseBI | CCWGG | 4 cut(s) | 365, 455, 545, 626 |
| BseDI | CCNNGG | 8 cut(s) | 80, 279, 321, 624, 688, 789, 840, 909 |
| BseMI | GCAATG | 1 cut(s) | 135 |
| BseMII | CTCAG | 3 cut(s) | 595, 866, 873 |
| BseNI | ACTGG | 2 cut(s) | 102, 726 |
| BseRI | GAGGAG | 2 cut(s) | 272, 602 |
| BseSI | GKGCMC | 2 cut(s) | 286, 516 |
| BseX3I | CGGCCG | 1 cut(s) | 900 |
| BseXI | GCAGC | 5 cut(s) | 21, 448, 756, 883, 892 |
| BseYI | CCCAGC | 2 cut(s) | 136, 439 |
| BsgI | GTGCAG | 1 cut(s) | 137 |
| Bsh1236I | CGCG | 3 cut(s) | 62, 211, 288 |
| Bsh1285I | CGRYCG | 2 cut(s) | 473, 903 |
| BshNI | GGYRCC | 1 cut(s) | 971 |
| BsiEI | CGRYCG | 2 cut(s) | 473, 903 |
| BsiHKAI | GWGCWC | 2 cut(s) | 97, 582 |
| BsiHKCI | CYCGRG | 1 cut(s) | 320 |
| BsiSI | CCGG | 4 cut(s) | 173, 246, 279, 969 |
| BslFI | GGGAC | 3 cut(s) | 67, 623, 748 |
| BsmFI | GGGAC | 3 cut(s) | 67, 623, 748 |
| BsoBI | CYCGRG | 1 cut(s) | 320 |
| Bsp120I | GGGCCC | 1 cut(s) | 282 |
| Bsp1286I | GDGCHC | 4 cut(s) | 97, 286, 516, 582 |
| BspCNI | CTCAG | 3 cut(s) | 594, 867, 874 |
| BspFNI | CGCG | 3 cut(s) | 62, 211, 288 |
| BspLI | GGNNCC | 7 cut(s) | 55, 168, 283, 284, 315, 890, 973 |
| BspMI | ACCTGC | 1 cut(s) | 301 |
| BspT107I | GGYRCC | 1 cut(s) | 971 |
| BsrBI | CCGCTC | 3 cut(s) | 574, 715, 727 |
| BsrDI | GCAATG | 1 cut(s) | 135 |
| BsrFI | RCCGGY | 1 cut(s) | 968 |
| BsrI | ACTGG | 2 cut(s) | 102, 726 |
| BssAI | RCCGGY | 1 cut(s) | 968 |
| BssECI | CCNNGG | 8 cut(s) | 80, 279, 321, 624, 688, 789, 840, 909 |
| BssNI | GRCGYC | 2 cut(s) | 684, 972 |
| BssSI | CACGAG | 1 cut(s) | 533 |
| BssT1I | CCWWGG | 1 cut(s) | 789 |
| Bst2BI | CACGAG | 1 cut(s) | 533 |
| Bst2UI | CCWGG | 4 cut(s) | 365, 455, 545, 626 |
| Bst4CI | ACNGT | 2 cut(s) | 738, 852 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstACI | GRCGYC | 2 cut(s) | 684, 972 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 115 |
| BstC8I | GCNNGC | 9 cut(s) | 39, 192, 209, 286, 434, 598, 695, 699, 970 |
| BstDEI | CTNAG | 3 cut(s) | 581, 875, 882 |
| BstDSI | CCRYGG | 2 cut(s) | 688, 909 |
| BstFNI | CGCG | 3 cut(s) | 62, 211, 288 |
| BstH2I | RGCGCY | 2 cut(s) | 882, 975 |
| BstHHI | GCGC | 3 cut(s) | 135, 881, 974 |
| BstMCI | CGRYCG | 2 cut(s) | 473, 903 |
| BstNI | CCWGG | 4 cut(s) | 365, 455, 545, 626 |
| BstNSI | RCATGY | 1 cut(s) | 763 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 479 |
| BstSCI | CCNGG | 5 cut(s) | 278, 363, 453, 543, 624 |
| BstSFI | CTRYAG | 1 cut(s) | 602 |
| BstSLI | GKGCMC | 2 cut(s) | 286, 516 |
| BstUI | CGCG | 3 cut(s) | 62, 211, 288 |
| BstV1I | GCAGC | 5 cut(s) | 21, 448, 756, 883, 892 |
| BstV2I | GAAGAC | 1 cut(s) | 270 |
| BstZI | CGGCCG | 1 cut(s) | 900 |
| BtgI | CCRYGG | 2 cut(s) | 688, 909 |
| BtrI | CACGTC | 1 cut(s) | 337 |
| BtsIMutI | CAGTG | 2 cut(s) | 95, 947 |
| BveI | ACCTGC | 1 cut(s) | 301 |
| Cac8I | GCNNGC | 9 cut(s) | 39, 192, 209, 286, 434, 598, 695, 699, 970 |
| CciNI | GCGGCCGC | 1 cut(s) | 900 |
| CfoI | GCGC | 3 cut(s) | 135, 881, 974 |
| Cfr10I | RCCGGY | 1 cut(s) | 968 |
| Cfr13I | GGNCC | 4 cut(s) | 54, 282, 283, 622 |
| CseI | GACGC | 3 cut(s) | 68, 660, 692 |
| Csp6I | GTAC | 2 cut(s) | 354, 919 |
| CviAII | CATG | 1 cut(s) | 760 |
| CviQI | GTAC | 2 cut(s) | 354, 919 |
| DdeI | CTNAG | 3 cut(s) | 581, 875, 882 |
| DinI | GGCGCC | 1 cut(s) | 973 |
| DraIII | CACNNNGTG | 1 cut(s) | 115 |
| EaeI | YGGCCR | 3 cut(s) | 99, 783, 900 |
| EagI | CGGCCG | 1 cut(s) | 900 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| EciI | GGCGGA | 1 cut(s) | 306 |
| Ecl136II | GAGCTC | 1 cut(s) | 580 |
| EclXI | CGGCCG | 1 cut(s) | 900 |
| Eco130I | CCWWGG | 1 cut(s) | 789 |
| Eco147I | AGGCCT | 1 cut(s) | 190 |
| Eco24I | GRGCYC | 2 cut(s) | 286, 582 |
| Eco47I | GGWCC | 1 cut(s) | 54 |
| Eco47III | AGCGCT | 1 cut(s) | 880 |
| Eco52I | CGGCCG | 1 cut(s) | 900 |
| Eco53kI | GAGCTC | 1 cut(s) | 580 |
| Eco57I | CTGAAG | 3 cut(s) | 203, 481, 797 |
| Eco88I | CYCGRG | 1 cut(s) | 320 |
| EcoICRI | GAGCTC | 1 cut(s) | 580 |
| EcoO109I | RGGNCCY | 1 cut(s) | 282 |
| EcoRII | CCWGG | 4 cut(s) | 363, 453, 543, 624 |
| EcoT14I | CCWWGG | 1 cut(s) | 789 |
| EcoT38I | GRGCYC | 2 cut(s) | 286, 582 |
| EgeI | GGCGCC | 1 cut(s) | 973 |
| EheI | GGCGCC | 1 cut(s) | 973 |
| ErhI | CCWWGG | 1 cut(s) | 789 |
| FaeI | CATG | 1 cut(s) | 763 |
| FaiI | YATR | 3 cut(s) | 104, 155, 761 |
| FaqI | GGGAC | 3 cut(s) | 67, 623, 748 |
| FatI | CATG | 1 cut(s) | 759 |
| FblI | GTMKAC | 1 cut(s) | 473 |
| FriOI | GRGCYC | 2 cut(s) | 286, 582 |
| GlaI | GCGC | 3 cut(s) | 134, 880, 973 |
| GsaI | CCCAGC | 2 cut(s) | 140, 443 |
| GsuI | CTGGAG | 2 cut(s) | 476, 743 |
| HaeII | RGCGCY | 2 cut(s) | 882, 975 |
| HapII | CCGG | 4 cut(s) | 173, 246, 279, 969 |
| HgaI | GACGC | 3 cut(s) | 68, 660, 692 |
| HhaI | GCGC | 3 cut(s) | 135, 881, 974 |
| Hin1I | GRCGYC | 2 cut(s) | 684, 972 |
| Hin1II | CATG | 1 cut(s) | 763 |
| Hin6I | GCGC | 3 cut(s) | 133, 879, 972 |
| HinP1I | GCGC | 3 cut(s) | 133, 879, 972 |
| HincII | GTYRAC | 2 cut(s) | 474, 484 |
| HindII | GTYRAC | 2 cut(s) | 474, 484 |
| HinfI | GANTC | 4 cut(s) | 242, 368, 821, 914 |
| HpaII | CCGG | 4 cut(s) | 173, 246, 279, 969 |
| HphI | GGTGA | 6 cut(s) | 38, 76, 142, 416, 416, 872 |
| Hpy166II | GTNNAC | 3 cut(s) | 407, 474, 484 |
| Hpy188I | TCNGA | 1 cut(s) | 84 |
| Hpy188III | TCNNGA | 1 cut(s) | 394 |
| Hpy8I | GTNNAC | 3 cut(s) | 407, 474, 484 |
| Hpy99I | CGWCG | 4 cut(s) | 62, 200, 527, 654 |
| HpyAV | CCTTC | 5 cut(s) | 505, 793, 821, 937, 958 |
| HpyCH4III | ACNGT | 2 cut(s) | 738, 852 |
| HpyCH4IV | ACGT | 2 cut(s) | 267, 336 |
| HpyCH4V | TGCA | 2 cut(s) | 118, 532 |
| HpyF3I | CTNAG | 3 cut(s) | 581, 875, 882 |
| HpySE526I | ACGT | 2 cut(s) | 267, 336 |
| Hsp92I | GRCGYC | 2 cut(s) | 684, 972 |
| Hsp92II | CATG | 1 cut(s) | 763 |
| HspAI | GCGC | 3 cut(s) | 133, 879, 972 |
| KasI | GGCGCC | 1 cut(s) | 971 |
| KroI | GCCGGC | 1 cut(s) | 968 |
| KroNI | GCCGGC | 1 cut(s) | 970 |
| LmnI | GCTCC | 5 cut(s) | 166, 577, 724, 751, 888 |
| Lsp1109I | GCAGC | 5 cut(s) | 21, 448, 756, 883, 892 |
| LweI | GCATC | 2 cut(s) | 560, 664 |
| MaeII | ACGT | 2 cut(s) | 267, 336 |
| MaeIII | GTNAC | 3 cut(s) | 26, 148, 865 |
| MbiI | CCGCTC | 3 cut(s) | 574, 715, 727 |
| MboII | GAAGA | 4 cut(s) | 133, 266, 275, 310 |
| MhlI | GDGCHC | 4 cut(s) | 97, 286, 516, 582 |
| MlsI | TGGCCA | 1 cut(s) | 101 |
| MluNI | TGGCCA | 1 cut(s) | 101 |
| Mly113I | GGCGCC | 1 cut(s) | 972 |
| MlyI | GAGTC | 4 cut(s) | 236, 362, 830, 923 |
| MmeI | TCCRAC | 3 cut(s) | 144, 729, 834 |
| Mox20I | TGGCCA | 1 cut(s) | 101 |
| MroNI | GCCGGC | 1 cut(s) | 968 |
| MroXI | GAANNNNTTC | 1 cut(s) | 810 |
| MscI | TGGCCA | 1 cut(s) | 101 |
| MseI | TTAA | 1 cut(s) | 846 |
| MslI | CAYNNNNRTG | 2 cut(s) | 21, 212 |
| Msp20I | TGGCCA | 1 cut(s) | 101 |
| MspA1I | CMGCKG | 4 cut(s) | 140, 439, 817, 905 |
| MspI | CCGG | 4 cut(s) | 173, 246, 279, 969 |
| MspR9I | CCNGG | 5 cut(s) | 280, 365, 455, 545, 626 |
| MvaI | CCWGG | 4 cut(s) | 365, 455, 545, 626 |
| MvnI | CGCG | 3 cut(s) | 62, 211, 288 |
| NaeI | GCCGGC | 1 cut(s) | 970 |
| NarI | GGCGCC | 1 cut(s) | 972 |
| NciI | CCSGG | 1 cut(s) | 280 |
| NgoMIV | GCCGGC | 1 cut(s) | 968 |
| NlaIII | CATG | 1 cut(s) | 763 |
| NlaIV | GGNNCC | 7 cut(s) | 55, 168, 283, 284, 315, 890, 973 |
| NmeAIII | GCCGAG | 2 cut(s) | 412, 865 |
| NmuCI | GTSAC | 2 cut(s) | 26, 148 |
| NotI | GCGGCCGC | 1 cut(s) | 900 |
| NspI | RCATGY | 1 cut(s) | 763 |
| OliI | CACNNNNGTG | 1 cut(s) | 212 |
| PceI | AGGCCT | 1 cut(s) | 190 |
| PciI | ACATGT | 1 cut(s) | 759 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 66, 531 |
| PdiI | GCCGGC | 1 cut(s) | 970 |
| PdmI | GAANNNNTTC | 1 cut(s) | 810 |
| PleI | GAGTC | 4 cut(s) | 236, 362, 829, 922 |
| PluTI | GGCGCC | 1 cut(s) | 975 |
| PpsI | GAGTC | 4 cut(s) | 236, 362, 829, 922 |
| PscI | ACATGT | 1 cut(s) | 759 |
| PshAI | GACNNNNGTC | 1 cut(s) | 479 |
| Psp124BI | GAGCTC | 1 cut(s) | 582 |
| Psp6I | CCWGG | 4 cut(s) | 363, 453, 543, 624 |
| PspFI | CCCAGC | 2 cut(s) | 136, 439 |
| PspGI | CCWGG | 4 cut(s) | 363, 453, 543, 624 |
| PspN4I | GGNNCC | 7 cut(s) | 55, 168, 283, 284, 315, 890, 973 |
| PspOMI | GGGCCC | 1 cut(s) | 282 |
| PspPI | GGNCC | 4 cut(s) | 54, 282, 283, 622 |
| PvuII | CAGCTG | 1 cut(s) | 439 |
| RsaI | GTAC | 2 cut(s) | 355, 920 |
| RsaNI | GTAC | 2 cut(s) | 354, 919 |
| RseI | CAYNNNNRTG | 2 cut(s) | 21, 212 |
| SacI | GAGCTC | 1 cut(s) | 582 |
| SalI | GTCGAC | 1 cut(s) | 472 |
| SaqAI | TTAA | 1 cut(s) | 846 |
| Sau96I | GGNCC | 4 cut(s) | 54, 282, 283, 622 |
| SchI | GAGTC | 4 cut(s) | 236, 362, 830, 923 |
| ScrFI | CCNGG | 5 cut(s) | 280, 365, 455, 545, 626 |
| SduI | GDGCHC | 4 cut(s) | 97, 286, 516, 582 |
| SfaNI | GCATC | 2 cut(s) | 560, 664 |
| SfcI | CTRYAG | 1 cut(s) | 602 |
| SfoI | GGCGCC | 1 cut(s) | 973 |
| SinI | GGWCC | 1 cut(s) | 54 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 21, 212 |
| SseBI | AGGCCT | 1 cut(s) | 190 |
| SspDI | GGCGCC | 1 cut(s) | 971 |
| SstI | GAGCTC | 1 cut(s) | 582 |
| StuI | AGGCCT | 1 cut(s) | 190 |
| StyD4I | CCNGG | 5 cut(s) | 278, 363, 453, 543, 624 |
| StyI | CCWWGG | 1 cut(s) | 789 |
| TaaI | ACNGT | 2 cut(s) | 738, 852 |
| TaiI | ACGT | 2 cut(s) | 270, 339 |
| TaqI | TCGA | 2 cut(s) | 473, 645 |
| TaqII | GACCGA | 2 cut(s) | 71, 968 |
| Tru1I | TTAA | 1 cut(s) | 846 |
| Tru9I | TTAA | 1 cut(s) | 846 |
| TscAI | CASTG | 2 cut(s) | 102, 954 |
| TseFI | GTSAC | 2 cut(s) | 26, 148 |
| TseI | GCWGC | 5 cut(s) | 34, 436, 769, 896, 905 |
| Tsp45I | GTSAC | 2 cut(s) | 26, 148 |
| TspGWI | ACGGA | 1 cut(s) | 511 |
| TspRI | CASTG | 2 cut(s) | 102, 954 |
| VpaK11BI | GGWCC | 1 cut(s) | 54 |
| XceI | RCATGY | 1 cut(s) | 763 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 160 |
| XmiI | GTMKAC | 1 cut(s) | 473 |
| XmnI | GAANNNNTTC | 1 cut(s) | 810 |