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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 100 |
| AccB1I | GGYRCC | 2 cut(s) | 253, 477 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 409 |
| AccII | CGCG | 3 cut(s) | 178, 260, 334 |
| AccIII | TCCGGA | 1 cut(s) | 108 |
| AciI | CCGC | 9 cut(s) | 236, 258, 260, 285, 334, 364, 400, 432, 508 |
| AclI | AACGTT | 1 cut(s) | 270 |
| AclWI | GGATC | 2 cut(s) | 189, 227 |
| AcoI | YGGCCR | 2 cut(s) | 41, 335 |
| AcvI | CACGTG | 1 cut(s) | 36 |
| AcyI | GRCGYC | 2 cut(s) | 254, 478 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 39, 50, 301, 328, 373, 409, 457 |
| AflIII | ACRYGT | 1 cut(s) | 35 |
| AgsI | TTSAA | 3 cut(s) | 149, 161, 230 |
| AluBI | AGCT | 1 cut(s) | 408 |
| AluI | AGCT | 1 cut(s) | 408 |
| Alw21I | GWGCWC | 1 cut(s) | 71 |
| Alw26I | GTCTC | 1 cut(s) | 160 |
| Alw44I | GTGCAC | 1 cut(s) | 67 |
| AlwI | GGATC | 2 cut(s) | 189, 227 |
| Ama87I | CYCGRG | 1 cut(s) | 444 |
| Aor13HI | TCCGGA | 1 cut(s) | 108 |
| AoxI | GGCC | 5 cut(s) | 41, 335, 434, 448, 487 |
| ApaLI | GTGCAC | 1 cut(s) | 67 |
| ApeKI | GCWGC | 3 cut(s) | 101, 291, 396 |
| AspA2I | CCTAGG | 1 cut(s) | 295 |
| AspLEI | GCGC | 6 cut(s) | 101, 178, 256, 334, 396, 480 |
| AspS9I | GGNCC | 2 cut(s) | 434, 487 |
| AsuC2I | CCSGG | 3 cut(s) | 368, 438, 458 |
| AsuHPI | GGTGA | 1 cut(s) | 140 |
| AvaI | CYCGRG | 1 cut(s) | 444 |
| AvrII | CCTAGG | 1 cut(s) | 295 |
| AxyI | CCTNAGG | 1 cut(s) | 482 |
| BaeGI | GKGCMC | 2 cut(s) | 71, 373 |
| BanI | GGYRCC | 2 cut(s) | 253, 477 |
| BanII | GRGCYC | 4 cut(s) | 309, 380, 421, 445 |
| BauI | CACGAG | 1 cut(s) | 468 |
| BbrPI | CACGTG | 1 cut(s) | 36 |
| BbsI | GAAGAC | 1 cut(s) | 189 |
| Bbv12I | GWGCWC | 1 cut(s) | 71 |
| BbvI | GCAGC | 3 cut(s) | 113, 303, 408 |
| BccI | CCATC | 2 cut(s) | 112, 308 |
| BceAI | ACGGC | 3 cut(s) | 28, 38, 435 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 360, 394 |
| BcnI | CCSGG | 3 cut(s) | 368, 438, 458 |
| BcoDI | GTCTC | 1 cut(s) | 160 |
| BfaI | CTAG | 1 cut(s) | 296 |
| BfmI | CTRYAG | 2 cut(s) | 289, 427 |
| BfoI | RGCGCY | 2 cut(s) | 257, 481 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 486 |
| BisI | GCNGC | 6 cut(s) | 102, 236, 292, 335, 397, 400 |
| BlnI | CCTAGG | 1 cut(s) | 295 |
| BlsI | GCNGC | 6 cut(s) | 103, 237, 293, 336, 398, 401 |
| Bme1390I | CCNGG | 3 cut(s) | 368, 438, 458 |
| BmeT110I | CYCGRG | 1 cut(s) | 444 |
| BmgT120I | GGNCC | 2 cut(s) | 434, 487 |
| BmiI | GGNNCC | 5 cut(s) | 255, 418, 442, 479, 488 |
| BmrFI | CCNGG | 3 cut(s) | 368, 438, 458 |
| BmsI | GCATC | 1 cut(s) | 247 |
| BoxI | GACNNNNGTC | 1 cut(s) | 189 |
| BpiI | GAAGAC | 1 cut(s) | 189 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 291, 323 |
| BpuMI | CCSGG | 3 cut(s) | 368, 438, 458 |
| BsaAI | YACGTR | 1 cut(s) | 36 |
| BsaHI | GRCGYC | 2 cut(s) | 254, 478 |
| BsaJI | CCNNGG | 5 cut(s) | 205, 215, 258, 295, 445 |
| BsaWI | WCCGGW | 1 cut(s) | 108 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 39, 50, 301, 328, 373, 409, 457 |
| Bse21I | CCTNAGG | 1 cut(s) | 482 |
| BseAI | TCCGGA | 1 cut(s) | 108 |
| BseDI | CCNNGG | 5 cut(s) | 205, 215, 258, 295, 445 |
| BseGI | GGATG | 1 cut(s) | 71 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 39, 50, 301, 328, 373, 409, 457 |
| BseSI | GKGCMC | 2 cut(s) | 71, 373 |
| BseX3I | CGGCCG | 2 cut(s) | 41, 335 |
| BseXI | GCAGC | 3 cut(s) | 113, 303, 408 |
| Bsh1236I | CGCG | 3 cut(s) | 178, 260, 334 |
| Bsh1285I | CGRYCG | 2 cut(s) | 44, 338 |
| BshFI | GGCC | 5 cut(s) | 43, 337, 436, 450, 489 |
| BshNI | GGYRCC | 2 cut(s) | 253, 477 |
| BsiEI | CGRYCG | 2 cut(s) | 44, 338 |
| BsiHKAI | GWGCWC | 1 cut(s) | 71 |
| BsiHKCI | CYCGRG | 1 cut(s) | 444 |
| BsiSI | CCGG | 4 cut(s) | 109, 367, 437, 457 |
| BslFI | GGGAC | 1 cut(s) | 473 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 39, 50, 301, 328, 373, 409, 457 |
| BsmAI | GTCTC | 1 cut(s) | 160 |
| BsmFI | GGGAC | 1 cut(s) | 473 |
| BsmI | GAATGC | 1 cut(s) | 104 |
| BsnI | GGCC | 5 cut(s) | 43, 337, 436, 450, 489 |
| BsoBI | CYCGRG | 1 cut(s) | 444 |
| Bsp1286I | GDGCHC | 6 cut(s) | 71, 309, 373, 380, 421, 445 |
| Bsp13I | TCCGGA | 1 cut(s) | 108 |
| Bsp143I | GATC | 2 cut(s) | 194, 219 |
| BspACI | CCGC | 9 cut(s) | 236, 258, 260, 285, 334, 364, 400, 432, 508 |
| BspANI | GGCC | 5 cut(s) | 43, 337, 436, 450, 489 |
| BspEI | TCCGGA | 1 cut(s) | 108 |
| BspFNI | CGCG | 3 cut(s) | 178, 260, 334 |
| BspLI | GGNNCC | 5 cut(s) | 255, 418, 442, 479, 488 |
| BspMAI | CTGCAG | 1 cut(s) | 293 |
| BspPI | GGATC | 2 cut(s) | 189, 227 |
| BspT107I | GGYRCC | 2 cut(s) | 253, 477 |
| BssECI | CCNNGG | 5 cut(s) | 205, 215, 258, 295, 445 |
| BssMI | GATC | 2 cut(s) | 194, 219 |
| BssNI | GRCGYC | 2 cut(s) | 254, 478 |
| BssSI | CACGAG | 1 cut(s) | 468 |
| BssT1I | CCWWGG | 2 cut(s) | 205, 295 |
| Bst2BI | CACGAG | 1 cut(s) | 468 |
| Bst4CI | ACNGT | 2 cut(s) | 128, 188 |
| BstACI | GRCGYC | 2 cut(s) | 254, 478 |
| BstBAI | YACGTR | 1 cut(s) | 36 |
| BstC8I | GCNNGC | 4 cut(s) | 258, 289, 309, 434 |
| BstDEI | CTNAG | 1 cut(s) | 482 |
| BstDSI | CCRYGG | 2 cut(s) | 215, 258 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 299 |
| BstF5I | GGATG | 1 cut(s) | 71 |
| BstFNI | CGCG | 3 cut(s) | 178, 260, 334 |
| BstH2I | RGCGCY | 2 cut(s) | 257, 481 |
| BstHHI | GCGC | 6 cut(s) | 101, 178, 256, 334, 396, 480 |
| BstKTI | GATC | 2 cut(s) | 197, 222 |
| BstMAI | GTCTC | 1 cut(s) | 160 |
| BstMBI | GATC | 2 cut(s) | 194, 219 |
| BstMCI | CGRYCG | 2 cut(s) | 44, 338 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 405, 486 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 189 |
| BstSCI | CCNGG | 3 cut(s) | 366, 436, 456 |
| BstSFI | CTRYAG | 2 cut(s) | 289, 427 |
| BstSLI | GKGCMC | 2 cut(s) | 71, 373 |
| BstUI | CGCG | 3 cut(s) | 178, 260, 334 |
| BstV1I | GCAGC | 3 cut(s) | 113, 303, 408 |
| BstV2I | GAAGAC | 1 cut(s) | 189 |
| BstZI | CGGCCG | 2 cut(s) | 41, 335 |
| Bsu36I | CCTNAGG | 1 cut(s) | 482 |
| BsuRI | GGCC | 5 cut(s) | 43, 337, 436, 450, 489 |
| BtgI | CCRYGG | 2 cut(s) | 215, 258 |
| BtgZI | GCGATG | 1 cut(s) | 131 |
| BtsCI | GGATG | 1 cut(s) | 71 |
| Cac8I | GCNNGC | 4 cut(s) | 258, 289, 309, 434 |
| CfoI | GCGC | 6 cut(s) | 101, 178, 256, 334, 396, 480 |
| Cfr13I | GGNCC | 2 cut(s) | 434, 487 |
| Cfr42I | CCGCGG | 1 cut(s) | 261 |
| DdeI | CTNAG | 1 cut(s) | 482 |
| DinI | GGCGCC | 2 cut(s) | 255, 479 |
| DpnI | GATC | 2 cut(s) | 196, 221 |
| DpnII | GATC | 2 cut(s) | 194, 219 |
| EaeI | YGGCCR | 2 cut(s) | 41, 335 |
| EagI | CGGCCG | 2 cut(s) | 41, 335 |
| EclXI | CGGCCG | 2 cut(s) | 41, 335 |
| Eco130I | CCWWGG | 2 cut(s) | 205, 295 |
| Eco24I | GRGCYC | 4 cut(s) | 309, 380, 421, 445 |
| Eco52I | CGGCCG | 2 cut(s) | 41, 335 |
| Eco72I | CACGTG | 1 cut(s) | 36 |
| Eco81I | CCTNAGG | 1 cut(s) | 482 |
| Eco88I | CYCGRG | 1 cut(s) | 444 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 299 |
| EcoT14I | CCWWGG | 2 cut(s) | 205, 295 |
| EcoT38I | GRGCYC | 4 cut(s) | 309, 380, 421, 445 |
| EgeI | GGCGCC | 2 cut(s) | 255, 479 |
| EheI | GGCGCC | 2 cut(s) | 255, 479 |
| ErhI | CCWWGG | 2 cut(s) | 205, 295 |
| FaiI | YATR | 4 cut(s) | 155, 249, 251, 429 |
| FaqI | GGGAC | 1 cut(s) | 473 |
| FauI | CCCGC | 4 cut(s) | 253, 265, 371, 425 |
| FauNDI | CATATG | 1 cut(s) | 249 |
| Fnu4HI | GCNGC | 6 cut(s) | 102, 236, 292, 335, 397, 400 |
| FokI | GGATG | 1 cut(s) | 58 |
| FriOI | GRGCYC | 4 cut(s) | 309, 380, 421, 445 |
| Fsp4HI | GCNGC | 6 cut(s) | 102, 236, 292, 335, 397, 400 |
| FspBI | CTAG | 1 cut(s) | 296 |
| FspI | TGCGCA | 1 cut(s) | 100 |
| GlaI | GCGC | 6 cut(s) | 100, 177, 255, 333, 395, 479 |
| GluI | GCNGC | 6 cut(s) | 102, 236, 292, 335, 397, 400 |
| HaeII | RGCGCY | 2 cut(s) | 257, 481 |
| HaeIII | GGCC | 5 cut(s) | 43, 337, 436, 450, 489 |
| HapII | CCGG | 4 cut(s) | 109, 367, 437, 457 |
| HhaI | GCGC | 6 cut(s) | 101, 178, 256, 334, 396, 480 |
| Hin1I | GRCGYC | 2 cut(s) | 254, 478 |
| Hin6I | GCGC | 6 cut(s) | 99, 176, 254, 332, 394, 478 |
| HinP1I | GCGC | 6 cut(s) | 99, 176, 254, 332, 394, 478 |
| HincII | GTYRAC | 1 cut(s) | 93 |
| HindII | GTYRAC | 1 cut(s) | 93 |
| HindIII | AAGCTT | 1 cut(s) | 406 |
| HinfI | GANTC | 1 cut(s) | 464 |
| HpaII | CCGG | 4 cut(s) | 109, 367, 437, 457 |
| HphI | GGTGA | 1 cut(s) | 140 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 93 |
| Hpy188I | TCNGA | 2 cut(s) | 20, 416 |
| Hpy188III | TCNNGA | 3 cut(s) | 109, 227, 470 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 93 |
| Hpy99I | CGWCG | 1 cut(s) | 24 |
| HpyAV | CCTTC | 2 cut(s) | 86, 143 |
| HpyCH4III | ACNGT | 2 cut(s) | 128, 188 |
| HpyCH4IV | ACGT | 3 cut(s) | 35, 270, 492 |
| HpyCH4V | TGCA | 2 cut(s) | 69, 291 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 405, 486 |
| HpyF3I | CTNAG | 1 cut(s) | 482 |
| HpySE526I | ACGT | 3 cut(s) | 35, 270, 492 |
| Hsp92I | GRCGYC | 2 cut(s) | 254, 478 |
| HspAI | GCGC | 6 cut(s) | 99, 176, 254, 332, 394, 478 |
| KasI | GGCGCC | 2 cut(s) | 253, 477 |
| Kpn2I | TCCGGA | 1 cut(s) | 108 |
| KspI | CCGCGG | 1 cut(s) | 261 |
| Kzo9I | GATC | 2 cut(s) | 194, 219 |
| LmnI | GCTCC | 2 cut(s) | 416, 440 |
| LpnPI | CCDG | 5 cut(s) | 122, 301, 380, 450, 470 |
| Lsp1109I | GCAGC | 3 cut(s) | 113, 303, 408 |
| LweI | GCATC | 1 cut(s) | 247 |
| MaeI | CTAG | 1 cut(s) | 296 |
| MaeII | ACGT | 3 cut(s) | 35, 270, 492 |
| MaeIII | GTNAC | 4 cut(s) | 11, 83, 422, 452 |
| MalI | GATC | 2 cut(s) | 196, 221 |
| MboI | GATC | 2 cut(s) | 194, 219 |
| MboII | GAAGA | 1 cut(s) | 194 |
| MhlI | GDGCHC | 6 cut(s) | 71, 309, 373, 380, 421, 445 |
| Mly113I | GGCGCC | 2 cut(s) | 254, 478 |
| MmeI | TCCRAC | 3 cut(s) | 43, 114, 394 |
| MnlI | CCTC | 4 cut(s) | 26, 295, 440, 498 |
| MroI | TCCGGA | 1 cut(s) | 108 |
| MspA1I | CMGCKG | 1 cut(s) | 260 |
| MspI | CCGG | 4 cut(s) | 109, 367, 437, 457 |
| MspR9I | CCNGG | 3 cut(s) | 368, 438, 458 |
| Mva1269I | GAATGC | 1 cut(s) | 104 |
| MvnI | CGCG | 3 cut(s) | 178, 260, 334 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 405, 486 |
| NarI | GGCGCC | 2 cut(s) | 254, 478 |
| NciI | CCSGG | 3 cut(s) | 368, 438, 458 |
| NdeI | CATATG | 1 cut(s) | 249 |
| NdeII | GATC | 2 cut(s) | 194, 219 |
| NlaIV | GGNNCC | 5 cut(s) | 255, 418, 442, 479, 488 |
| NmeAIII | GCCGAG | 1 cut(s) | 363 |
| NmuCI | GTSAC | 1 cut(s) | 452 |
| NsbI | TGCGCA | 1 cut(s) | 100 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 41 |
| PctI | GAATGC | 1 cut(s) | 104 |
| PfeI | GAWTC | 1 cut(s) | 464 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 409 |
| PkrI | GCNGC | 6 cut(s) | 103, 237, 293, 336, 398, 401 |
| PluTI | GGCGCC | 2 cut(s) | 257, 481 |
| PmaCI | CACGTG | 1 cut(s) | 36 |
| PmlI | CACGTG | 1 cut(s) | 36 |
| Ppu21I | YACGTR | 1 cut(s) | 36 |
| PshAI | GACNNNNGTC | 1 cut(s) | 189 |
| Psp1406I | AACGTT | 1 cut(s) | 270 |
| PspCI | CACGTG | 1 cut(s) | 36 |
| PspN4I | GGNNCC | 5 cut(s) | 255, 418, 442, 479, 488 |
| PspPI | GGNCC | 2 cut(s) | 434, 487 |
| PstI | CTGCAG | 1 cut(s) | 293 |
| SacII | CCGCGG | 1 cut(s) | 261 |
| SatI | GCNGC | 6 cut(s) | 102, 236, 292, 335, 397, 400 |
| Sau3AI | GATC | 2 cut(s) | 194, 219 |
| Sau96I | GGNCC | 2 cut(s) | 434, 487 |
| ScrFI | CCNGG | 3 cut(s) | 368, 438, 458 |
| SduI | GDGCHC | 6 cut(s) | 71, 309, 373, 380, 421, 445 |
| SetI | ASST | 8 cut(s) | 18, 38, 68, 147, 154, 273, 410, 495 |
| SfaNI | GCATC | 1 cut(s) | 247 |
| SfcI | CTRYAG | 2 cut(s) | 289, 427 |
| SfoI | GGCGCC | 2 cut(s) | 255, 479 |
| Sfr303I | CCGCGG | 1 cut(s) | 261 |
| SgrBI | CCGCGG | 1 cut(s) | 261 |
| SsiI | CCGC | 9 cut(s) | 236, 258, 260, 285, 334, 364, 400, 432, 508 |
| SspDI | GGCGCC | 2 cut(s) | 253, 477 |
| SspMI | CTAG | 1 cut(s) | 296 |
| StyD4I | CCNGG | 3 cut(s) | 366, 436, 456 |
| StyI | CCWWGG | 2 cut(s) | 205, 295 |
| TaaI | ACNGT | 2 cut(s) | 128, 188 |
| TaiI | ACGT | 3 cut(s) | 38, 273, 495 |
| TaqI | TCGA | 2 cut(s) | 193, 380 |
| TauI | GCSGC | 3 cut(s) | 238, 337, 402 |
| TfiI | GAWTC | 1 cut(s) | 464 |
| TseFI | GTSAC | 1 cut(s) | 452 |
| TseI | GCWGC | 3 cut(s) | 101, 291, 396 |
| Tsp45I | GTSAC | 1 cut(s) | 452 |
| TspGWI | ACGGA | 1 cut(s) | 232 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 409 |
| VneI | GTGCAC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 299 |
| XmaJI | CCTAGG | 1 cut(s) | 295 |
| XspI | CTAG | 1 cut(s) | 296 |