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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 344 |
| AatII | GACGTC | 1 cut(s) | 1671 |
| Acc36I | ACCTGC | 1 cut(s) | 344 |
| AccB1I | GGYRCC | 2 cut(s) | 335, 523 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 541, 588 |
| AccBSI | CCGCTC | 3 cut(s) | 1633, 1711, 1762 |
| AccI | GTMKAC | 3 cut(s) | 345, 980, 1086 |
| AccII | CGCG | 8 cut(s) | 187, 237, 991, 993, 1008, 1161, 1674, 1722 |
| AccIII | TCCGGA | 1 cut(s) | 190 |
| AclI | AACGTT | 1 cut(s) | 398 |
| AclWI | GGATC | 3 cut(s) | 532, 1025, 1386 |
| AcoI | YGGCCR | 5 cut(s) | 603, 1368, 1641, 1689, 1821 |
| AcsI | RAATTY | 1 cut(s) | 551 |
| AcyI | GRCGYC | 2 cut(s) | 452, 1668 |
| AfaI | GTAC | 2 cut(s) | 818, 1555 |
| AfeI | AGCGCT | 1 cut(s) | 245 |
| AflIII | ACRYGT | 3 cut(s) | 48, 953, 1720 |
| AgeI | ACCGGT | 1 cut(s) | 1067 |
| AgsI | TTSAA | 1 cut(s) | 391 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 769 |
| AjiI | CACGTC | 2 cut(s) | 49, 954 |
| AjnI | CCWGG | 2 cut(s) | 540, 1889 |
| AleI | CACNNNNGTG | 1 cut(s) | 1434 |
| AluBI | AGCT | 5 cut(s) | 198, 230, 424, 745, 1681 |
| AluI | AGCT | 5 cut(s) | 198, 230, 424, 745, 1681 |
| Alw21I | GWGCWC | 1 cut(s) | 200 |
| Alw26I | GTCTC | 5 cut(s) | 1125, 1256, 1323, 1695, 1729 |
| AlwI | GGATC | 3 cut(s) | 532, 1025, 1386 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 541 |
| Ama87I | CYCGRG | 1 cut(s) | 1259 |
| Aor13HI | TCCGGA | 1 cut(s) | 190 |
| Aor51HI | AGCGCT | 1 cut(s) | 245 |
| ApoI | RAATTY | 1 cut(s) | 551 |
| AsiGI | ACCGGT | 1 cut(s) | 1067 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 660 |
| AspLEI | GCGC | 8 cut(s) | 237, 246, 429, 693, 739, 993, 1273, 1537 |
| AspS9I | GGNCC | 9 cut(s) | 641, 786, 1183, 1212, 1237, 1359, 1439, 1512, 1907 |
| AsuC2I | CCSGG | 6 cut(s) | 40, 411, 631, 1143, 1187, 1522 |
| AsuHPI | GGTGA | 7 cut(s) | 221, 430, 1124, 1264, 1309, 1340, 1516 |
| AsuNHI | GCTAGC | 1 cut(s) | 266 |
| AvaI | CYCGRG | 1 cut(s) | 1259 |
| AvaII | GGWCC | 6 cut(s) | 786, 1183, 1359, 1439, 1512, 1907 |
| BaeGI | GKGCMC | 1 cut(s) | 528 |
| BalI | TGGCCA | 3 cut(s) | 605, 1643, 1691 |
| BanI | GGYRCC | 2 cut(s) | 335, 523 |
| BanII | GRGCYC | 1 cut(s) | 200 |
| BauI | CACGAG | 1 cut(s) | 485 |
| Bbv12I | GWGCWC | 1 cut(s) | 200 |
| BccI | CCATC | 7 cut(s) | 161, 326, 1174, 1328, 1700, 1813, 1847 |
| BceAI | ACGGC | 7 cut(s) | 326, 453, 464, 1383, 1536, 1572, 1936 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 325, 359 |
| BciT130I | CCWGG | 2 cut(s) | 542, 1891 |
| BcnI | CCSGG | 6 cut(s) | 40, 411, 631, 1143, 1187, 1522 |
| BcoDI | GTCTC | 5 cut(s) | 1125, 1256, 1323, 1695, 1729 |
| BfaI | CTAG | 5 cut(s) | 131, 201, 231, 267, 1049 |
| BfmI | CTRYAG | 3 cut(s) | 146, 1344, 1754 |
| BfoI | RGCGCY | 5 cut(s) | 247, 694, 740, 1274, 1538 |
| BfuAI | ACCTGC | 1 cut(s) | 344 |
| Bme1390I | CCNGG | 8 cut(s) | 40, 411, 542, 631, 1143, 1187, 1522, 1891 |
| Bme18I | GGWCC | 6 cut(s) | 786, 1183, 1359, 1439, 1512, 1907 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 769 |
| BmeT110I | CYCGRG | 1 cut(s) | 1259 |
| BmgBI | CACGTC | 2 cut(s) | 49, 954 |
| BmgT120I | GGNCC | 9 cut(s) | 641, 786, 1183, 1212, 1237, 1359, 1439, 1512, 1907 |
| BmrFI | CCNGG | 8 cut(s) | 40, 411, 542, 631, 1143, 1187, 1522, 1891 |
| BmsI | GCATC | 4 cut(s) | 1290, 1296, 1410, 1876 |
| BmtI | GCTAGC | 1 cut(s) | 270 |
| BpmI | CTGGAG | 2 cut(s) | 518, 1559 |
| Bpu10I | CCTNAGC | 2 cut(s) | 719, 1773 |
| BpuMI | CCSGG | 6 cut(s) | 40, 411, 631, 1143, 1187, 1522 |
| BsaAI | YACGTR | 2 cut(s) | 925, 1935 |
| BsaHI | GRCGYC | 2 cut(s) | 452, 1668 |
| BsaJI | CCNNGG | 7 cut(s) | 410, 502, 694, 1224, 1284, 1644, 1672 |
| BsaWI | WCCGGW | 4 cut(s) | 190, 892, 1067, 1291 |
| Bse118I | RCCGGY | 4 cut(s) | 726, 1067, 1370, 1459 |
| Bse1I | ACTGG | 4 cut(s) | 782, 1114, 1315, 1623 |
| BseAI | TCCGGA | 1 cut(s) | 190 |
| BseBI | CCWGG | 2 cut(s) | 542, 1891 |
| BseDI | CCNNGG | 7 cut(s) | 410, 502, 694, 1224, 1284, 1644, 1672 |
| BseGI | GGATG | 6 cut(s) | 153, 369, 448, 1339, 1425, 1824 |
| BseMII | CTCAG | 4 cut(s) | 342, 710, 855, 1265 |
| BseNI | ACTGG | 4 cut(s) | 782, 1114, 1315, 1623 |
| BseRI | GAGGAG | 2 cut(s) | 1130, 1502 |
| BseSI | GKGCMC | 1 cut(s) | 528 |
| BseX3I | CGGCCG | 1 cut(s) | 1368 |
| BseYI | CCCAGC | 5 cut(s) | 278, 463, 1239, 1400, 1837 |
| BsgI | GTGCAG | 3 cut(s) | 984, 1370, 1817 |
| Bsh1236I | CGCG | 8 cut(s) | 187, 237, 991, 993, 1008, 1161, 1674, 1722 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1371 |
| BshNI | GGYRCC | 2 cut(s) | 335, 523 |
| BshTI | ACCGGT | 1 cut(s) | 1067 |
| BsiEI | CGRYCG | 1 cut(s) | 1371 |
| BsiHKAI | GWGCWC | 1 cut(s) | 200 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1259 |
| BsiWI | CGTACG | 1 cut(s) | 1553 |
| BslFI | GGGAC | 4 cut(s) | 776, 799, 984, 1372 |
| BsmAI | GTCTC | 5 cut(s) | 1125, 1256, 1323, 1695, 1729 |
| BsmBI | CGTCTC | 2 cut(s) | 1256, 1729 |
| BsmFI | GGGAC | 4 cut(s) | 776, 799, 984, 1372 |
| BsmI | GAATGC | 1 cut(s) | 310 |
| BsoBI | CYCGRG | 1 cut(s) | 1259 |
| Bsp1286I | GDGCHC | 2 cut(s) | 200, 528 |
| Bsp13I | TCCGGA | 1 cut(s) | 190 |
| Bsp143I | GATC | 5 cut(s) | 537, 827, 1017, 1378, 1743 |
| Bsp68I | TCGCGA | 1 cut(s) | 1161 |
| BspCNI | CTCAG | 4 cut(s) | 341, 711, 856, 1266 |
| BspEI | TCCGGA | 1 cut(s) | 190 |
| BspFNI | CGCG | 8 cut(s) | 187, 237, 991, 993, 1008, 1161, 1674, 1722 |
| BspMAI | CTGCAG | 1 cut(s) | 1758 |
| BspMI | ACCTGC | 1 cut(s) | 344 |
| BspOI | GCTAGC | 1 cut(s) | 270 |
| BspPI | GGATC | 3 cut(s) | 532, 1025, 1386 |
| BspT107I | GGYRCC | 2 cut(s) | 335, 523 |
| BsrBI | CCGCTC | 3 cut(s) | 1633, 1711, 1762 |
| BsrFI | RCCGGY | 4 cut(s) | 726, 1067, 1370, 1459 |
| BsrI | ACTGG | 4 cut(s) | 782, 1114, 1315, 1623 |
| BssAI | RCCGGY | 4 cut(s) | 726, 1067, 1370, 1459 |
| BssECI | CCNNGG | 7 cut(s) | 410, 502, 694, 1224, 1284, 1644, 1672 |
| BssMI | GATC | 5 cut(s) | 537, 827, 1017, 1378, 1743 |
| BssNAI | GTATAC | 1 cut(s) | 981 |
| BssNI | GRCGYC | 2 cut(s) | 452, 1668 |
| BssSI | CACGAG | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 2 cut(s) | 502, 1644 |
| Bst1107I | GTATAC | 1 cut(s) | 981 |
| Bst2BI | CACGAG | 1 cut(s) | 485 |
| Bst2UI | CCWGG | 2 cut(s) | 542, 1891 |
| Bst4CI | ACNGT | 4 cut(s) | 649, 809, 1249, 1348 |
| Bst6I | CTCTTC | 2 cut(s) | 279, 1572 |
| BstACI | GRCGYC | 2 cut(s) | 452, 1668 |
| BstBAI | YACGTR | 2 cut(s) | 925, 1935 |
| BstDEI | CTNAG | 6 cut(s) | 328, 719, 758, 864, 1274, 1773 |
| BstDSI | CCRYGG | 1 cut(s) | 1672 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 879, 1754 |
| BstF5I | GGATG | 6 cut(s) | 153, 369, 448, 1339, 1425, 1824 |
| BstFNI | CGCG | 8 cut(s) | 187, 237, 991, 993, 1008, 1161, 1674, 1722 |
| BstH2I | RGCGCY | 5 cut(s) | 247, 694, 740, 1274, 1538 |
| BstHHI | GCGC | 8 cut(s) | 237, 246, 429, 693, 739, 993, 1273, 1537 |
| BstKTI | GATC | 5 cut(s) | 540, 830, 1020, 1381, 1746 |
| BstMAI | GTCTC | 5 cut(s) | 1125, 1256, 1323, 1695, 1729 |
| BstMBI | GATC | 5 cut(s) | 537, 827, 1017, 1378, 1743 |
| BstMCI | CGRYCG | 1 cut(s) | 1371 |
| BstNI | CCWGG | 2 cut(s) | 542, 1891 |
| BstNSI | RCATGY | 1 cut(s) | 1898 |
| BstSCI | CCNGG | 8 cut(s) | 38, 409, 540, 629, 1141, 1185, 1520, 1889 |
| BstSFI | CTRYAG | 3 cut(s) | 146, 1344, 1754 |
| BstSLI | GKGCMC | 1 cut(s) | 528 |
| BstUI | CGCG | 8 cut(s) | 187, 237, 991, 993, 1008, 1161, 1674, 1722 |
| BstX2I | RGATCY | 1 cut(s) | 537 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1436 |
| BstYI | RGATCY | 1 cut(s) | 537 |
| BstZ17I | GTATAC | 1 cut(s) | 981 |
| BstZI | CGGCCG | 1 cut(s) | 1368 |
| BtgI | CCRYGG | 1 cut(s) | 1672 |
| BtgZI | GCGATG | 1 cut(s) | 1193 |
| BtrI | CACGTC | 2 cut(s) | 49, 954 |
| BtsCI | GGATG | 6 cut(s) | 153, 369, 448, 1339, 1425, 1824 |
| BtsI | GCAGTG | 2 cut(s) | 34, 116 |
| BtsIMutI | CAGTG | 5 cut(s) | 34, 116, 1107, 1353, 1885 |
| BtuMI | TCGCGA | 1 cut(s) | 1161 |
| BveI | ACCTGC | 1 cut(s) | 344 |
| CaiI | CAGNNNCTG | 1 cut(s) | 541 |
| CfoI | GCGC | 8 cut(s) | 237, 246, 429, 693, 739, 993, 1273, 1537 |
| Cfr10I | RCCGGY | 4 cut(s) | 726, 1067, 1370, 1459 |
| Cfr13I | GGNCC | 9 cut(s) | 641, 786, 1183, 1212, 1237, 1359, 1439, 1512, 1907 |
| Cfr42I | CCGCGG | 1 cut(s) | 1675 |
| CseI | GACGC | 7 cut(s) | 80, 176, 441, 784, 997, 1172, 1711 |
| Csp6I | GTAC | 2 cut(s) | 817, 1554 |
| CspAI | ACCGGT | 1 cut(s) | 1067 |
| CviAII | CATG | 6 cut(s) | 104, 607, 1128, 1216, 1895, 1911 |
| CviQI | GTAC | 2 cut(s) | 817, 1554 |
| DdeI | CTNAG | 6 cut(s) | 328, 719, 758, 864, 1274, 1773 |
| DpnI | GATC | 5 cut(s) | 539, 829, 1019, 1380, 1745 |
| DpnII | GATC | 5 cut(s) | 537, 827, 1017, 1378, 1743 |
| DriI | GACNNNNNGTC | 1 cut(s) | 769 |
| EaeI | YGGCCR | 5 cut(s) | 603, 1368, 1641, 1689, 1821 |
| EagI | CGGCCG | 1 cut(s) | 1368 |
| Eam1104I | CTCTTC | 2 cut(s) | 279, 1572 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 769 |
| EarI | CTCTTC | 2 cut(s) | 279, 1572 |
| Ecl136II | GAGCTC | 1 cut(s) | 198 |
| EclXI | CGGCCG | 1 cut(s) | 1368 |
| Eco130I | CCWWGG | 2 cut(s) | 502, 1644 |
| Eco24I | GRGCYC | 1 cut(s) | 200 |
| Eco47I | GGWCC | 6 cut(s) | 786, 1183, 1359, 1439, 1512, 1907 |
| Eco47III | AGCGCT | 1 cut(s) | 245 |
| Eco52I | CGGCCG | 1 cut(s) | 1368 |
| Eco53kI | GAGCTC | 1 cut(s) | 198 |
| Eco88I | CYCGRG | 1 cut(s) | 1259 |
| EcoICRI | GAGCTC | 1 cut(s) | 198 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 879, 1754 |
| EcoO109I | RGGNCCY | 3 cut(s) | 641, 786, 1359 |
| EcoRII | CCWGG | 2 cut(s) | 540, 1889 |
| EcoT14I | CCWWGG | 2 cut(s) | 502, 1644 |
| EcoT38I | GRGCYC | 1 cut(s) | 200 |
| ErhI | CCWWGG | 2 cut(s) | 502, 1644 |
| Esp3I | CGTCTC | 2 cut(s) | 1256, 1729 |
| FaeI | CATG | 6 cut(s) | 107, 610, 1131, 1219, 1898, 1914 |
| FaqI | GGGAC | 4 cut(s) | 776, 799, 984, 1372 |
| FatI | CATG | 6 cut(s) | 103, 606, 1127, 1215, 1894, 1910 |
| FblI | GTMKAC | 3 cut(s) | 345, 980, 1086 |
| FokI | GGATG | 6 cut(s) | 140, 376, 455, 1346, 1432, 1831 |
| FriOI | GRGCYC | 1 cut(s) | 200 |
| FspBI | CTAG | 5 cut(s) | 131, 201, 231, 267, 1049 |
| GlaI | GCGC | 8 cut(s) | 236, 245, 428, 692, 738, 992, 1272, 1536 |
| GsaI | CCCAGC | 5 cut(s) | 282, 467, 1243, 1404, 1841 |
| GsuI | CTGGAG | 2 cut(s) | 518, 1559 |
| HaeII | RGCGCY | 5 cut(s) | 247, 694, 740, 1274, 1538 |
| HgaI | GACGC | 7 cut(s) | 80, 176, 441, 784, 997, 1172, 1711 |
| HhaI | GCGC | 8 cut(s) | 237, 246, 429, 693, 739, 993, 1273, 1537 |
| Hin1I | GRCGYC | 2 cut(s) | 452, 1668 |
| Hin1II | CATG | 6 cut(s) | 107, 610, 1131, 1219, 1898, 1914 |
| Hin6I | GCGC | 8 cut(s) | 235, 244, 427, 691, 737, 991, 1271, 1535 |
| HinP1I | GCGC | 8 cut(s) | 235, 244, 427, 691, 737, 991, 1271, 1535 |
| HincII | GTYRAC | 3 cut(s) | 346, 382, 1087 |
| HindII | GTYRAC | 3 cut(s) | 346, 382, 1087 |
| HphI | GGTGA | 7 cut(s) | 221, 430, 1124, 1264, 1309, 1340, 1516 |
| Hpy166II | GTNNAC | 7 cut(s) | 346, 382, 484, 715, 981, 1087, 1255 |
| Hpy188I | TCNGA | 9 cut(s) | 46, 331, 404, 573, 865, 1022, 1058, 1285, 1383 |
| Hpy188III | TCNNGA | 5 cut(s) | 191, 485, 535, 1160, 1568 |
| Hpy8I | GTNNAC | 7 cut(s) | 346, 382, 484, 715, 981, 1087, 1255 |
| Hpy99I | CGWCG | 8 cut(s) | 242, 347, 350, 439, 457, 800, 955, 1166 |
| HpyAV | CCTTC | 7 cut(s) | 442, 799, 833, 1168, 1405, 1618, 1839 |
| HpyCH4III | ACNGT | 4 cut(s) | 649, 809, 1249, 1348 |
| HpyCH4IV | ACGT | 8 cut(s) | 9, 48, 398, 924, 953, 1265, 1668, 1934 |
| HpyCH4V | TGCA | 9 cut(s) | 107, 702, 932, 965, 1351, 1456, 1756, 1798, 1914 |
| HpyF3I | CTNAG | 6 cut(s) | 328, 719, 758, 864, 1274, 1773 |
| HpySE526I | ACGT | 8 cut(s) | 9, 48, 398, 924, 953, 1265, 1668, 1934 |
| Hsp92I | GRCGYC | 2 cut(s) | 452, 1668 |
| Hsp92II | CATG | 6 cut(s) | 107, 610, 1131, 1219, 1898, 1914 |
| HspAI | GCGC | 8 cut(s) | 235, 244, 427, 691, 737, 991, 1271, 1535 |
| KflI | GGGWCCC | 1 cut(s) | 1359 |
| Kpn2I | TCCGGA | 1 cut(s) | 190 |
| KroI | GCCGGC | 2 cut(s) | 726, 1370 |
| KroNI | GCCGGC | 2 cut(s) | 728, 1372 |
| KspI | CCGCGG | 1 cut(s) | 1675 |
| Kzo9I | GATC | 5 cut(s) | 537, 827, 1017, 1378, 1743 |
| LmnI | GCTCC | 7 cut(s) | 278, 734, 1109, 1489, 1708, 1735, 1759 |
| LweI | GCATC | 4 cut(s) | 1290, 1296, 1410, 1876 |
| MaeI | CTAG | 5 cut(s) | 131, 201, 231, 267, 1049 |
| MaeII | ACGT | 8 cut(s) | 9, 48, 398, 924, 953, 1265, 1668, 1934 |
| MaeIII | GTNAC | 5 cut(s) | 166, 1145, 1477, 1504, 1655 |
| MalI | GATC | 5 cut(s) | 539, 829, 1019, 1380, 1745 |
| MbiI | CCGCTC | 3 cut(s) | 1633, 1711, 1762 |
| MboI | GATC | 5 cut(s) | 537, 827, 1017, 1378, 1743 |
| MboII | GAAGA | 5 cut(s) | 44, 296, 1007, 1010, 1589 |
| MflI | RGATCY | 1 cut(s) | 537 |
| MhlI | GDGCHC | 2 cut(s) | 200, 528 |
| MlsI | TGGCCA | 3 cut(s) | 605, 1643, 1691 |
| MluCI | AATT | 3 cut(s) | 551, 1201, 1859 |
| MluI | ACGCGT | 1 cut(s) | 1720 |
| MluNI | TGGCCA | 3 cut(s) | 605, 1643, 1691 |
| MlyI | GAGTC | 5 cut(s) | 758, 1127, 1165, 1285, 1814 |
| MmeI | TCCRAC | 3 cut(s) | 895, 1081, 1713 |
| Mox20I | TGGCCA | 3 cut(s) | 605, 1643, 1691 |
| MroI | TCCGGA | 1 cut(s) | 190 |
| MroNI | GCCGGC | 2 cut(s) | 726, 1370 |
| MroXI | GAANNNNTTC | 1 cut(s) | 660 |
| MscI | TGGCCA | 3 cut(s) | 605, 1643, 1691 |
| MseI | TTAA | 2 cut(s) | 858, 1097 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1326, 1434, 1793 |
| Msp20I | TGGCCA | 3 cut(s) | 605, 1643, 1691 |
| MspA1I | CMGCKG | 9 cut(s) | 218, 278, 374, 467, 520, 902, 968, 1674, 1801 |
| MspR9I | CCNGG | 8 cut(s) | 40, 411, 542, 631, 1143, 1187, 1522, 1891 |
| Mva1269I | GAATGC | 1 cut(s) | 310 |
| MvaI | CCWGG | 2 cut(s) | 542, 1891 |
| MvnI | CGCG | 8 cut(s) | 187, 237, 991, 993, 1008, 1161, 1674, 1722 |
| NaeI | GCCGGC | 2 cut(s) | 728, 1372 |
| NciI | CCSGG | 6 cut(s) | 40, 411, 631, 1143, 1187, 1522 |
| NdeII | GATC | 5 cut(s) | 537, 827, 1017, 1378, 1743 |
| NgoMIV | GCCGGC | 2 cut(s) | 726, 1370 |
| NheI | GCTAGC | 1 cut(s) | 266 |
| NlaIII | CATG | 6 cut(s) | 107, 610, 1131, 1219, 1898, 1914 |
| NmeAIII | GCCGAG | 2 cut(s) | 719, 1249 |
| NmuCI | GTSAC | 3 cut(s) | 1477, 1504, 1655 |
| NruI | TCGCGA | 1 cut(s) | 1161 |
| NspI | RCATGY | 1 cut(s) | 1898 |
| OliI | CACNNNNGTG | 1 cut(s) | 1434 |
| PaqCI | CACCTGC | 1 cut(s) | 344 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 92, 184 |
| PctI | GAATGC | 1 cut(s) | 310 |
| PdiI | GCCGGC | 2 cut(s) | 728, 1372 |
| PdmI | GAANNNNTTC | 1 cut(s) | 660 |
| PfeI | GAWTC | 6 cut(s) | 35, 83, 311, 457, 754, 1562 |
| Pfl23II | CGTACG | 1 cut(s) | 1553 |
| PflFI | GACNNNGTC | 1 cut(s) | 1469 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 541, 588 |
| PinAI | ACCGGT | 1 cut(s) | 1067 |
| PleI | GAGTC | 5 cut(s) | 758, 1126, 1164, 1284, 1813 |
| PpsI | GAGTC | 5 cut(s) | 758, 1126, 1164, 1284, 1813 |
| Ppu21I | YACGTR | 2 cut(s) | 925, 1935 |
| PpuMI | RGGWCCY | 2 cut(s) | 786, 1359 |
| Psp124BI | GAGCTC | 1 cut(s) | 200 |
| Psp1406I | AACGTT | 1 cut(s) | 398 |
| Psp5II | RGGWCCY | 2 cut(s) | 786, 1359 |
| Psp6I | CCWGG | 2 cut(s) | 540, 1889 |
| PspFI | CCCAGC | 5 cut(s) | 278, 463, 1239, 1400, 1837 |
| PspGI | CCWGG | 2 cut(s) | 540, 1889 |
| PspLI | CGTACG | 1 cut(s) | 1553 |
| PspPI | GGNCC | 9 cut(s) | 641, 786, 1183, 1212, 1237, 1359, 1439, 1512, 1907 |
| PspPPI | RGGWCCY | 2 cut(s) | 786, 1359 |
| PstI | CTGCAG | 1 cut(s) | 1758 |
| PstNI | CAGNNNCTG | 1 cut(s) | 541 |
| PsuI | RGATCY | 1 cut(s) | 537 |
| PsyI | GACNNNGTC | 1 cut(s) | 1469 |
| RruI | TCGCGA | 1 cut(s) | 1161 |
| RsaI | GTAC | 2 cut(s) | 818, 1555 |
| RsaNI | GTAC | 2 cut(s) | 817, 1554 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1326, 1434, 1793 |
| SacI | GAGCTC | 1 cut(s) | 200 |
| SacII | CCGCGG | 1 cut(s) | 1675 |
| SalI | GTCGAC | 2 cut(s) | 344, 1085 |
| SaqAI | TTAA | 2 cut(s) | 858, 1097 |
| Sau3AI | GATC | 5 cut(s) | 537, 827, 1017, 1378, 1743 |
| Sau96I | GGNCC | 9 cut(s) | 641, 786, 1183, 1212, 1237, 1359, 1439, 1512, 1907 |
| SchI | GAGTC | 5 cut(s) | 758, 1127, 1165, 1285, 1814 |
| ScrFI | CCNGG | 8 cut(s) | 40, 411, 542, 631, 1143, 1187, 1522, 1891 |
| SduI | GDGCHC | 2 cut(s) | 200, 528 |
| SfaNI | GCATC | 4 cut(s) | 1290, 1296, 1410, 1876 |
| SfcI | CTRYAG | 3 cut(s) | 146, 1344, 1754 |
| Sfr303I | CCGCGG | 1 cut(s) | 1675 |
| SgrBI | CCGCGG | 1 cut(s) | 1675 |
| SgrDI | CGTCGACG | 1 cut(s) | 344 |
| SinI | GGWCC | 6 cut(s) | 786, 1183, 1359, 1439, 1512, 1907 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1326, 1434, 1793 |
| Sse9I | AATT | 3 cut(s) | 551, 1201, 1859 |
| SspMI | CTAG | 5 cut(s) | 131, 201, 231, 267, 1049 |
| SstI | GAGCTC | 1 cut(s) | 200 |
| StyD4I | CCNGG | 8 cut(s) | 38, 409, 540, 629, 1141, 1185, 1520, 1889 |
| StyI | CCWWGG | 2 cut(s) | 502, 1644 |
| TaaI | ACNGT | 4 cut(s) | 649, 809, 1249, 1348 |
| TaiI | ACGT | 8 cut(s) | 12, 51, 401, 927, 956, 1268, 1671, 1937 |
| TaqI | TCGA | 8 cut(s) | 23, 345, 455, 830, 880, 1086, 1154, 1629 |
| TasI | AATT | 3 cut(s) | 551, 1201, 1859 |
| TfiI | GAWTC | 6 cut(s) | 35, 83, 311, 457, 754, 1562 |
| Tru1I | TTAA | 2 cut(s) | 858, 1097 |
| Tru9I | TTAA | 2 cut(s) | 858, 1097 |
| TscAI | CASTG | 5 cut(s) | 34, 123, 1114, 1353, 1885 |
| TseFI | GTSAC | 3 cut(s) | 1477, 1504, 1655 |
| Tsp45I | GTSAC | 3 cut(s) | 1477, 1504, 1655 |
| TspDTI | ATGAA | 2 cut(s) | 623, 1731 |
| TspGWI | ACGGA | 2 cut(s) | 84, 1432 |
| TspRI | CASTG | 5 cut(s) | 34, 123, 1114, 1353, 1885 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1469 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 541, 588 |
| VpaK11BI | GGWCC | 6 cut(s) | 786, 1183, 1359, 1439, 1512, 1907 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 879, 1754 |
| XapI | RAATTY | 1 cut(s) | 551 |
| XceI | RCATGY | 1 cut(s) | 1898 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1322 |
| XmiI | GTMKAC | 3 cut(s) | 345, 980, 1086 |
| XmnI | GAANNNNTTC | 1 cut(s) | 660 |
| XspI | CTAG | 5 cut(s) | 131, 201, 231, 267, 1049 |
| ZraI | GACGTC | 1 cut(s) | 1669 |