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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 226 |
| AccB1I | GGYRCC | 3 cut(s) | 288, 473, 509 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 80, 519 |
| AccBSI | CCGCTC | 4 cut(s) | 8, 145, 286, 615 |
| AccI | GTMKAC | 1 cut(s) | 45 |
| AccII | CGCG | 2 cut(s) | 359, 690 |
| AclI | AACGTT | 1 cut(s) | 273 |
| AclWI | GGATC | 2 cut(s) | 303, 372 |
| AcoI | YGGCCR | 1 cut(s) | 480 |
| AcuI | CTGAAG | 2 cut(s) | 53, 367 |
| AcyI | GRCGYC | 5 cut(s) | 122, 223, 510, 665, 683 |
| AfaI | GTAC | 1 cut(s) | 546 |
| AgeI | ACCGGT | 1 cut(s) | 348 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 741 |
| AjiI | CACGTC | 1 cut(s) | 88 |
| AjnI | CCWGG | 7 cut(s) | 25, 114, 135, 195, 291, 477, 598 |
| AluBI | AGCT | 3 cut(s) | 268, 319, 451 |
| AluI | AGCT | 3 cut(s) | 268, 319, 451 |
| Alw21I | GWGCWC | 1 cut(s) | 441 |
| Alw26I | GTCTC | 3 cut(s) | 339, 339, 728 |
| AlwI | GGATC | 2 cut(s) | 303, 372 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 136, 599 |
| Ama87I | CYCGRG | 3 cut(s) | 616, 714, 753 |
| AoxI | GGCC | 6 cut(s) | 23, 169, 468, 480, 522, 705 |
| ApeKI | GCWGC | 3 cut(s) | 130, 461, 593 |
| AsiGI | ACCGGT | 1 cut(s) | 348 |
| AspLEI | GCGC | 2 cut(s) | 512, 692 |
| AspS9I | GGNCC | 6 cut(s) | 169, 193, 522, 602, 706, 759 |
| AsuC2I | CCSGG | 3 cut(s) | 606, 715, 716 |
| AsuHPI | GGTGA | 1 cut(s) | 662 |
| AvaI | CYCGRG | 3 cut(s) | 616, 714, 753 |
| AvaII | GGWCC | 3 cut(s) | 193, 602, 759 |
| BaeGI | GKGCMC | 2 cut(s) | 87, 478 |
| BalI | TGGCCA | 1 cut(s) | 482 |
| BanI | GGYRCC | 3 cut(s) | 288, 473, 509 |
| Bbv12I | GWGCWC | 1 cut(s) | 441 |
| BbvI | GCAGC | 3 cut(s) | 142, 473, 605 |
| BccI | CCATC | 1 cut(s) | 716 |
| BceAI | ACGGC | 2 cut(s) | 36, 77 |
| BciT130I | CCWGG | 7 cut(s) | 27, 116, 137, 197, 293, 479, 600 |
| BcnI | CCSGG | 3 cut(s) | 606, 715, 716 |
| BcoDI | GTCTC | 3 cut(s) | 339, 339, 728 |
| BfaI | CTAG | 2 cut(s) | 258, 766 |
| BfmI | CTRYAG | 1 cut(s) | 591 |
| BfoI | RGCGCY | 1 cut(s) | 513 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 530 |
| Bme18I | GGWCC | 3 cut(s) | 193, 602, 759 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 741 |
| BmeT110I | CYCGRG | 3 cut(s) | 616, 714, 753 |
| BmgBI | CACGTC | 1 cut(s) | 88 |
| BmgT120I | GGNCC | 6 cut(s) | 169, 193, 522, 602, 706, 759 |
| BmiI | GGNNCC | 5 cut(s) | 290, 475, 511, 604, 760 |
| BmrI | ACTGGG | 2 cut(s) | 529, 735 |
| BmsI | GCATC | 2 cut(s) | 235, 244 |
| BmuI | ACTGGG | 2 cut(s) | 529, 735 |
| BoxI | GACNNNNGTC | 1 cut(s) | 51 |
| BpmI | CTGGAG | 5 cut(s) | 48, 158, 341, 445, 627 |
| BpuMI | CCSGG | 3 cut(s) | 606, 715, 716 |
| BsaHI | GRCGYC | 5 cut(s) | 122, 223, 510, 665, 683 |
| BsaI | GGTCTC | 1 cut(s) | 339 |
| BsaJI | CCNNGG | 7 cut(s) | 135, 465, 477, 598, 678, 714, 754 |
| BsaWI | WCCGGW | 1 cut(s) | 348 |
| Bse118I | RCCGGY | 3 cut(s) | 348, 470, 538 |
| Bse1I | ACTGG | 2 cut(s) | 524, 741 |
| Bse3DI | GCAATG | 1 cut(s) | 540 |
| BseBI | CCWGG | 7 cut(s) | 27, 116, 137, 197, 293, 479, 600 |
| BseDI | CCNNGG | 7 cut(s) | 135, 465, 477, 598, 678, 714, 754 |
| BseGI | GGATG | 2 cut(s) | 259, 727 |
| BseMI | GCAATG | 1 cut(s) | 540 |
| BseNI | ACTGG | 2 cut(s) | 524, 741 |
| BseSI | GKGCMC | 2 cut(s) | 87, 478 |
| BseXI | GCAGC | 3 cut(s) | 142, 473, 605 |
| BseYI | CCCAGC | 3 cut(s) | 11, 657, 692 |
| Bsh1236I | CGCG | 2 cut(s) | 359, 690 |
| Bsh1285I | CGRYCG | 2 cut(s) | 45, 543 |
| BshFI | GGCC | 6 cut(s) | 25, 171, 470, 482, 524, 707 |
| BshNI | GGYRCC | 3 cut(s) | 288, 473, 509 |
| BshTI | ACCGGT | 1 cut(s) | 348 |
| BsiEI | CGRYCG | 2 cut(s) | 45, 543 |
| BsiHKAI | GWGCWC | 1 cut(s) | 441 |
| BsiHKCI | CYCGRG | 3 cut(s) | 616, 714, 753 |
| BsiSI | CCGG | 5 cut(s) | 349, 471, 539, 606, 715 |
| BslFI | GGGAC | 3 cut(s) | 588, 670, 729 |
| BsmAI | GTCTC | 3 cut(s) | 339, 339, 728 |
| BsmFI | GGGAC | 3 cut(s) | 588, 670, 729 |
| BsnI | GGCC | 6 cut(s) | 25, 171, 470, 482, 524, 707 |
| Bso31I | GGTCTC | 1 cut(s) | 339 |
| BsoBI | CYCGRG | 3 cut(s) | 616, 714, 753 |
| Bsp1286I | GDGCHC | 3 cut(s) | 87, 441, 478 |
| Bsp143I | GATC | 2 cut(s) | 295, 377 |
| BspANI | GGCC | 6 cut(s) | 25, 171, 470, 482, 524, 707 |
| BspFNI | CGCG | 2 cut(s) | 359, 690 |
| BspHI | TCATGA | 1 cut(s) | 103 |
| BspLI | GGNNCC | 5 cut(s) | 290, 475, 511, 604, 760 |
| BspMAI | CTGCAG | 1 cut(s) | 595 |
| BspPI | GGATC | 2 cut(s) | 303, 372 |
| BspT107I | GGYRCC | 3 cut(s) | 288, 473, 509 |
| BspTNI | GGTCTC | 1 cut(s) | 339 |
| BsrBI | CCGCTC | 4 cut(s) | 8, 145, 286, 615 |
| BsrDI | GCAATG | 1 cut(s) | 540 |
| BsrFI | RCCGGY | 3 cut(s) | 348, 470, 538 |
| BsrI | ACTGG | 2 cut(s) | 524, 741 |
| BssAI | RCCGGY | 3 cut(s) | 348, 470, 538 |
| BssECI | CCNNGG | 7 cut(s) | 135, 465, 477, 598, 678, 714, 754 |
| BssMI | GATC | 2 cut(s) | 295, 377 |
| BssNI | GRCGYC | 5 cut(s) | 122, 223, 510, 665, 683 |
| BssT1I | CCWWGG | 1 cut(s) | 465 |
| Bst2UI | CCWGG | 7 cut(s) | 27, 116, 137, 197, 293, 479, 600 |
| BstACI | GRCGYC | 5 cut(s) | 122, 223, 510, 665, 683 |
| BstC8I | GCNNGC | 5 cut(s) | 6, 75, 169, 266, 638 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 645 |
| BstF5I | GGATG | 2 cut(s) | 259, 727 |
| BstFNI | CGCG | 2 cut(s) | 359, 690 |
| BstH2I | RGCGCY | 1 cut(s) | 513 |
| BstHHI | GCGC | 2 cut(s) | 512, 692 |
| BstKTI | GATC | 2 cut(s) | 298, 380 |
| BstMAI | GTCTC | 3 cut(s) | 339, 339, 728 |
| BstMBI | GATC | 2 cut(s) | 295, 377 |
| BstMCI | CGRYCG | 2 cut(s) | 45, 543 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 254, 406, 467, 530, 590, 621, 689 |
| BstNI | CCWGG | 7 cut(s) | 27, 116, 137, 197, 293, 479, 600 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 51 |
| BstSFI | CTRYAG | 1 cut(s) | 591 |
| BstSLI | GKGCMC | 2 cut(s) | 87, 478 |
| BstUI | CGCG | 2 cut(s) | 359, 690 |
| BstV1I | GCAGC | 3 cut(s) | 142, 473, 605 |
| BstX2I | RGATCY | 1 cut(s) | 377 |
| BstYI | RGATCY | 1 cut(s) | 377 |
| BsuRI | GGCC | 6 cut(s) | 25, 171, 470, 482, 524, 707 |
| BtgZI | GCGATG | 1 cut(s) | 258 |
| BtrI | CACGTC | 1 cut(s) | 88 |
| BtsCI | GGATG | 2 cut(s) | 259, 727 |
| BtsI | GCAGTG | 1 cut(s) | 588 |
| BtsIMutI | CAGTG | 1 cut(s) | 588 |
| Cac8I | GCNNGC | 5 cut(s) | 6, 75, 169, 266, 638 |
| CaiI | CAGNNNCTG | 2 cut(s) | 136, 599 |
| CciI | TCATGA | 1 cut(s) | 103 |
| CfoI | GCGC | 2 cut(s) | 512, 692 |
| Cfr10I | RCCGGY | 3 cut(s) | 348, 470, 538 |
| Cfr13I | GGNCC | 6 cut(s) | 169, 193, 522, 602, 706, 759 |
| Cfr9I | CCCGGG | 1 cut(s) | 714 |
| CseI | GACGC | 5 cut(s) | 111, 488, 552, 672, 673 |
| Csp6I | GTAC | 1 cut(s) | 545 |
| CspAI | ACCGGT | 1 cut(s) | 348 |
| CviAII | CATG | 1 cut(s) | 104 |
| CviQI | GTAC | 1 cut(s) | 545 |
| DinI | GGCGCC | 1 cut(s) | 511 |
| DpnI | GATC | 2 cut(s) | 297, 379 |
| DpnII | GATC | 2 cut(s) | 295, 377 |
| DriI | GACNNNNNGTC | 1 cut(s) | 741 |
| EaeI | YGGCCR | 1 cut(s) | 480 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 741 |
| EciI | GGCGGA | 3 cut(s) | 266, 384, 734 |
| Eco130I | CCWWGG | 1 cut(s) | 465 |
| Eco31I | GGTCTC | 1 cut(s) | 339 |
| Eco47I | GGWCC | 3 cut(s) | 193, 602, 759 |
| Eco57I | CTGAAG | 2 cut(s) | 53, 367 |
| Eco88I | CYCGRG | 3 cut(s) | 616, 714, 753 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 645 |
| EcoRII | CCWGG | 7 cut(s) | 25, 114, 135, 195, 291, 477, 598 |
| EcoT14I | CCWWGG | 1 cut(s) | 465 |
| EgeI | GGCGCC | 1 cut(s) | 511 |
| EheI | GGCGCC | 1 cut(s) | 511 |
| ErhI | CCWWGG | 1 cut(s) | 465 |
| FaeI | CATG | 1 cut(s) | 107 |
| FaiI | YATR | 4 cut(s) | 105, 312, 332, 711 |
| FaqI | GGGAC | 3 cut(s) | 588, 670, 729 |
| FatI | CATG | 1 cut(s) | 103 |
| FauI | CCCGC | 5 cut(s) | 138, 160, 380, 617, 695 |
| FblI | GTMKAC | 1 cut(s) | 45 |
| FokI | GGATG | 2 cut(s) | 266, 734 |
| FspBI | CTAG | 2 cut(s) | 258, 766 |
| GlaI | GCGC | 2 cut(s) | 511, 691 |
| GsaI | CCCAGC | 3 cut(s) | 15, 661, 696 |
| GsuI | CTGGAG | 5 cut(s) | 48, 158, 341, 445, 627 |
| HaeII | RGCGCY | 1 cut(s) | 513 |
| HaeIII | GGCC | 6 cut(s) | 25, 171, 470, 482, 524, 707 |
| HapII | CCGG | 5 cut(s) | 349, 471, 539, 606, 715 |
| HgaI | GACGC | 5 cut(s) | 111, 488, 552, 672, 673 |
| HhaI | GCGC | 2 cut(s) | 512, 692 |
| Hin1I | GRCGYC | 5 cut(s) | 122, 223, 510, 665, 683 |
| Hin1II | CATG | 1 cut(s) | 107 |
| Hin6I | GCGC | 2 cut(s) | 510, 690 |
| HinP1I | GCGC | 2 cut(s) | 510, 690 |
| HincII | GTYRAC | 3 cut(s) | 46, 238, 354 |
| HindII | GTYRAC | 3 cut(s) | 46, 238, 354 |
| HinfI | GANTC | 5 cut(s) | 60, 391, 609, 653, 736 |
| HpaII | CCGG | 5 cut(s) | 349, 471, 539, 606, 715 |
| HphI | GGTGA | 1 cut(s) | 662 |
| Hpy166II | GTNNAC | 3 cut(s) | 46, 238, 354 |
| Hpy188I | TCNGA | 5 cut(s) | 228, 300, 504, 679, 763 |
| Hpy188III | TCNNGA | 3 cut(s) | 104, 175, 644 |
| Hpy8I | GTNNAC | 3 cut(s) | 46, 238, 354 |
| Hpy99I | CGWCG | 3 cut(s) | 92, 225, 568 |
| HpyAV | CCTTC | 6 cut(s) | 77, 184, 391, 439, 499, 641 |
| HpyCH4IV | ACGT | 3 cut(s) | 87, 223, 273 |
| HpyCH4V | TGCA | 1 cut(s) | 593 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 254, 406, 467, 530, 590, 621, 689 |
| HpySE526I | ACGT | 3 cut(s) | 87, 223, 273 |
| Hsp92I | GRCGYC | 5 cut(s) | 122, 223, 510, 665, 683 |
| Hsp92II | CATG | 1 cut(s) | 107 |
| HspAI | GCGC | 2 cut(s) | 510, 690 |
| KasI | GGCGCC | 1 cut(s) | 509 |
| Kzo9I | GATC | 2 cut(s) | 295, 377 |
| LmnI | GCTCC | 5 cut(s) | 322, 436, 448, 560, 589 |
| Lsp1109I | GCAGC | 3 cut(s) | 142, 473, 605 |
| LweI | GCATC | 2 cut(s) | 235, 244 |
| MaeI | CTAG | 2 cut(s) | 258, 766 |
| MaeII | ACGT | 3 cut(s) | 87, 223, 273 |
| MaeIII | GTNAC | 2 cut(s) | 179, 650 |
| MalI | GATC | 2 cut(s) | 297, 379 |
| MbiI | CCGCTC | 4 cut(s) | 8, 145, 286, 615 |
| MboI | GATC | 2 cut(s) | 295, 377 |
| MboII | GAAGA | 1 cut(s) | 379 |
| MflI | RGATCY | 1 cut(s) | 377 |
| MhlI | GDGCHC | 3 cut(s) | 87, 441, 478 |
| MlsI | TGGCCA | 1 cut(s) | 482 |
| MluCI | AATT | 2 cut(s) | 34, 371 |
| MluNI | TGGCCA | 1 cut(s) | 482 |
| Mly113I | GGCGCC | 1 cut(s) | 510 |
| MlyI | GAGTC | 5 cut(s) | 69, 400, 618, 647, 730 |
| Mox20I | TGGCCA | 1 cut(s) | 482 |
| MscI | TGGCCA | 1 cut(s) | 482 |
| Msp20I | TGGCCA | 1 cut(s) | 482 |
| MspA1I | CMGCKG | 3 cut(s) | 387, 434, 661 |
| MspI | CCGG | 5 cut(s) | 349, 471, 539, 606, 715 |
| MvaI | CCWGG | 7 cut(s) | 27, 116, 137, 197, 293, 479, 600 |
| MvnI | CGCG | 2 cut(s) | 359, 690 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 254, 406, 467, 530, 590, 621, 689 |
| NarI | GGCGCC | 1 cut(s) | 510 |
| NciI | CCSGG | 3 cut(s) | 606, 715, 716 |
| NdeII | GATC | 2 cut(s) | 295, 377 |
| NlaIII | CATG | 1 cut(s) | 107 |
| NlaIV | GGNNCC | 5 cut(s) | 290, 475, 511, 604, 760 |
| NmuCI | GTSAC | 2 cut(s) | 179, 650 |
| PagI | TCATGA | 1 cut(s) | 103 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 80, 519 |
| PfoI | TCCNGGA | 2 cut(s) | 195, 604 |
| PinAI | ACCGGT | 1 cut(s) | 348 |
| PleI | GAGTC | 5 cut(s) | 68, 399, 617, 647, 730 |
| PluTI | GGCGCC | 1 cut(s) | 513 |
| PpsI | GAGTC | 5 cut(s) | 68, 399, 617, 647, 730 |
| PshAI | GACNNNNGTC | 1 cut(s) | 51 |
| Psp1406I | AACGTT | 1 cut(s) | 273 |
| Psp6I | CCWGG | 7 cut(s) | 25, 114, 135, 195, 291, 477, 598 |
| PspFI | CCCAGC | 3 cut(s) | 11, 657, 692 |
| PspGI | CCWGG | 7 cut(s) | 25, 114, 135, 195, 291, 477, 598 |
| PspN4I | GGNNCC | 5 cut(s) | 290, 475, 511, 604, 760 |
| PspPI | GGNCC | 6 cut(s) | 169, 193, 522, 602, 706, 759 |
| PstI | CTGCAG | 1 cut(s) | 595 |
| PstNI | CAGNNNCTG | 2 cut(s) | 136, 599 |
| PsuI | RGATCY | 1 cut(s) | 377 |
| RsaI | GTAC | 1 cut(s) | 546 |
| RsaNI | GTAC | 1 cut(s) | 545 |
| SalI | GTCGAC | 1 cut(s) | 44 |
| Sau3AI | GATC | 2 cut(s) | 295, 377 |
| Sau96I | GGNCC | 6 cut(s) | 169, 193, 522, 602, 706, 759 |
| SchI | GAGTC | 5 cut(s) | 69, 400, 618, 647, 730 |
| SduI | GDGCHC | 3 cut(s) | 87, 441, 478 |
| SfaNI | GCATC | 2 cut(s) | 235, 244 |
| SfcI | CTRYAG | 1 cut(s) | 591 |
| SfoI | GGCGCC | 1 cut(s) | 511 |
| SinI | GGWCC | 3 cut(s) | 193, 602, 759 |
| SmaI | CCCGGG | 1 cut(s) | 716 |
| Sse9I | AATT | 2 cut(s) | 34, 371 |
| SspDI | GGCGCC | 1 cut(s) | 509 |
| SspMI | CTAG | 2 cut(s) | 258, 766 |
| StyI | CCWWGG | 1 cut(s) | 465 |
| TaiI | ACGT | 3 cut(s) | 90, 226, 276 |
| TaqI | TCGA | 1 cut(s) | 45 |
| TaqII | GACCGA | 1 cut(s) | 31 |
| TasI | AATT | 2 cut(s) | 34, 371 |
| TauI | GCSGC | 8 cut(s) | 11, 25, 122, 251, 289, 400, 423, 533 |
| TscAI | CASTG | 1 cut(s) | 595 |
| TseFI | GTSAC | 2 cut(s) | 179, 650 |
| TseI | GCWGC | 3 cut(s) | 130, 461, 593 |
| Tsp45I | GTSAC | 2 cut(s) | 179, 650 |
| TspDTI | ATGAA | 2 cut(s) | 92, 120 |
| TspMI | CCCGGG | 1 cut(s) | 714 |
| TspRI | CASTG | 1 cut(s) | 595 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 80, 519 |
| VpaK11BI | GGWCC | 3 cut(s) | 193, 602, 759 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 645 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 133 |
| XmaI | CCCGGG | 1 cut(s) | 714 |
| XmiI | GTMKAC | 1 cut(s) | 45 |
| XspI | CTAG | 2 cut(s) | 258, 766 |
| ZraI | GACGTC | 1 cut(s) | 224 |