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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 17 |
| AciI | CCGC | 9 cut(s) | 10, 74, 107, 126, 146, 227, 296, 299, 331 |
| AcvI | CACGTG | 1 cut(s) | 197 |
| AcyI | GRCGYC | 2 cut(s) | 18, 38 |
| AfaI | GTAC | 1 cut(s) | 112 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 106, 107, 152, 187 |
| AgsI | TTSAA | 2 cut(s) | 7, 308 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 249 |
| AjiI | CACGTC | 1 cut(s) | 52 |
| AluBI | AGCT | 2 cut(s) | 104, 260 |
| AluI | AGCT | 2 cut(s) | 104, 260 |
| Alw26I | GTCTC | 2 cut(s) | 74, 236 |
| Ama87I | CYCGRG | 2 cut(s) | 222, 261 |
| AoxI | GGCC | 2 cut(s) | 60, 136 |
| ApeKI | GCWGC | 2 cut(s) | 104, 123 |
| AspLEI | GCGC | 1 cut(s) | 20 |
| AspS9I | GGNCC | 4 cut(s) | 60, 137, 156, 267 |
| AsuC2I | CCSGG | 3 cut(s) | 57, 223, 224 |
| AvaI | CYCGRG | 2 cut(s) | 222, 261 |
| AvaII | GGWCC | 2 cut(s) | 156, 267 |
| BanI | GGYRCC | 1 cut(s) | 17 |
| BbrPI | CACGTG | 1 cut(s) | 197 |
| BbsI | GAAGAC | 1 cut(s) | 324 |
| BbvI | GCAGC | 2 cut(s) | 91, 135 |
| BccI | CCATC | 1 cut(s) | 224 |
| BceAI | ACGGC | 1 cut(s) | 296 |
| BcnI | CCSGG | 3 cut(s) | 57, 223, 224 |
| BcoDI | GTCTC | 2 cut(s) | 74, 236 |
| BfmI | CTRYAG | 1 cut(s) | 237 |
| BfoI | RGCGCY | 1 cut(s) | 21 |
| BisI | GCNGC | 4 cut(s) | 105, 124, 296, 299 |
| BlsI | GCNGC | 4 cut(s) | 106, 125, 297, 300 |
| Bme1390I | CCNGG | 3 cut(s) | 57, 223, 224 |
| Bme18I | GGWCC | 2 cut(s) | 156, 267 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 249 |
| BmeT110I | CYCGRG | 2 cut(s) | 222, 261 |
| BmgBI | CACGTC | 1 cut(s) | 52 |
| BmgT120I | GGNCC | 4 cut(s) | 60, 137, 156, 267 |
| BmiI | GGNNCC | 5 cut(s) | 19, 61, 157, 158, 268 |
| BmrFI | CCNGG | 3 cut(s) | 57, 223, 224 |
| BmrI | ACTGGG | 1 cut(s) | 243 |
| BmuI | ACTGGG | 1 cut(s) | 243 |
| BoxI | GACNNNNGTC | 1 cut(s) | 86 |
| BpiI | GAAGAC | 1 cut(s) | 324 |
| BpmI | CTGGAG | 1 cut(s) | 230 |
| BpuMI | CCSGG | 3 cut(s) | 57, 223, 224 |
| BsaAI | YACGTR | 1 cut(s) | 197 |
| BsaHI | GRCGYC | 2 cut(s) | 18, 38 |
| BsaI | GGTCTC | 1 cut(s) | 236 |
| BsaJI | CCNNGG | 2 cut(s) | 56, 222 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 106, 107, 152, 187 |
| Bse1I | ACTGG | 1 cut(s) | 249 |
| BseDI | CCNNGG | 2 cut(s) | 56, 222 |
| BseGI | GGATG | 2 cut(s) | 142, 235 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 106, 107, 152, 187 |
| BseMII | CTCAG | 1 cut(s) | 132 |
| BseNI | ACTGG | 1 cut(s) | 249 |
| BseXI | GCAGC | 2 cut(s) | 91, 135 |
| BseYI | CCCAGC | 3 cut(s) | 100, 159, 171 |
| Bsh1285I | CGRYCG | 2 cut(s) | 287, 291 |
| BshFI | GGCC | 2 cut(s) | 62, 138 |
| BshNI | GGYRCC | 1 cut(s) | 17 |
| BsiEI | CGRYCG | 2 cut(s) | 287, 291 |
| BsiHKCI | CYCGRG | 2 cut(s) | 222, 261 |
| BsiSI | CCGG | 4 cut(s) | 56, 77, 201, 223 |
| BslFI | GGGAC | 2 cut(s) | 56, 142 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 106, 107, 152, 187 |
| BsmAI | GTCTC | 2 cut(s) | 74, 236 |
| BsmFI | GGGAC | 2 cut(s) | 56, 142 |
| BsnI | GGCC | 2 cut(s) | 62, 138 |
| Bso31I | GGTCTC | 1 cut(s) | 236 |
| BsoBI | CYCGRG | 2 cut(s) | 222, 261 |
| Bsp143I | GATC | 2 cut(s) | 271, 284 |
| BspACI | CCGC | 9 cut(s) | 10, 74, 107, 126, 146, 227, 296, 299, 331 |
| BspANI | GGCC | 2 cut(s) | 62, 138 |
| BspCNI | CTCAG | 1 cut(s) | 131 |
| BspLI | GGNNCC | 5 cut(s) | 19, 61, 157, 158, 268 |
| BspT107I | GGYRCC | 1 cut(s) | 17 |
| BspTNI | GGTCTC | 1 cut(s) | 236 |
| BsrI | ACTGG | 1 cut(s) | 249 |
| BssECI | CCNNGG | 2 cut(s) | 56, 222 |
| BssMI | GATC | 2 cut(s) | 271, 284 |
| BssNI | GRCGYC | 2 cut(s) | 18, 38 |
| BstACI | GRCGYC | 2 cut(s) | 18, 38 |
| BstBAI | YACGTR | 1 cut(s) | 197 |
| BstC8I | GCNNGC | 2 cut(s) | 96, 280 |
| BstDEI | CTNAG | 1 cut(s) | 118 |
| BstF5I | GGATG | 2 cut(s) | 142, 235 |
| BstH2I | RGCGCY | 1 cut(s) | 21 |
| BstHHI | GCGC | 1 cut(s) | 20 |
| BstKTI | GATC | 2 cut(s) | 274, 287 |
| BstMAI | GTCTC | 2 cut(s) | 74, 236 |
| BstMBI | GATC | 2 cut(s) | 271, 284 |
| BstMCI | CGRYCG | 2 cut(s) | 287, 291 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 52, 104, 233 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 86 |
| BstSCI | CCNGG | 3 cut(s) | 55, 221, 222 |
| BstSFI | CTRYAG | 1 cut(s) | 237 |
| BstV1I | GCAGC | 2 cut(s) | 91, 135 |
| BstV2I | GAAGAC | 1 cut(s) | 324 |
| BsuRI | GGCC | 2 cut(s) | 62, 138 |
| BtrI | CACGTC | 1 cut(s) | 52 |
| BtsCI | GGATG | 2 cut(s) | 142, 235 |
| Cac8I | GCNNGC | 2 cut(s) | 96, 280 |
| CfoI | GCGC | 1 cut(s) | 20 |
| Cfr13I | GGNCC | 4 cut(s) | 60, 137, 156, 267 |
| Cfr9I | CCCGGG | 1 cut(s) | 222 |
| CseI | GACGC | 1 cut(s) | 27 |
| Csp6I | GTAC | 1 cut(s) | 111 |
| CviJI | RGCY | 8 cut(s) | 46, 62, 104, 138, 260, 282, 311, 326 |
| CviKI_1 | RGCY | 8 cut(s) | 46, 62, 104, 138, 260, 282, 311, 326 |
| CviQI | GTAC | 1 cut(s) | 111 |
| DdeI | CTNAG | 1 cut(s) | 118 |
| DinI | GGCGCC | 1 cut(s) | 19 |
| DpnI | GATC | 2 cut(s) | 273, 286 |
| DpnII | GATC | 2 cut(s) | 271, 284 |
| DriI | GACNNNNNGTC | 1 cut(s) | 249 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 249 |
| EciI | GGCGGA | 2 cut(s) | 135, 242 |
| Eco31I | GGTCTC | 1 cut(s) | 236 |
| Eco47I | GGWCC | 2 cut(s) | 156, 267 |
| Eco72I | CACGTG | 1 cut(s) | 197 |
| Eco88I | CYCGRG | 2 cut(s) | 222, 261 |
| EcoO109I | RGGNCCY | 1 cut(s) | 156 |
| EgeI | GGCGCC | 1 cut(s) | 19 |
| EheI | GGCGCC | 1 cut(s) | 19 |
| FaiI | YATR | 1 cut(s) | 239 |
| FaqI | GGGAC | 2 cut(s) | 56, 142 |
| FauI | CCCGC | 3 cut(s) | 81, 100, 119 |
| Fnu4HI | GCNGC | 4 cut(s) | 105, 124, 296, 299 |
| FokI | GGATG | 2 cut(s) | 129, 242 |
| Fsp4HI | GCNGC | 4 cut(s) | 105, 124, 296, 299 |
| GlaI | GCGC | 1 cut(s) | 19 |
| GluI | GCNGC | 4 cut(s) | 105, 124, 296, 299 |
| GsaI | CCCAGC | 3 cut(s) | 104, 163, 175 |
| GsuI | CTGGAG | 1 cut(s) | 230 |
| HaeII | RGCGCY | 1 cut(s) | 21 |
| HaeIII | GGCC | 2 cut(s) | 62, 138 |
| HapII | CCGG | 4 cut(s) | 56, 77, 201, 223 |
| HgaI | GACGC | 1 cut(s) | 27 |
| HhaI | GCGC | 1 cut(s) | 20 |
| Hin1I | GRCGYC | 2 cut(s) | 18, 38 |
| Hin6I | GCGC | 1 cut(s) | 18 |
| HinP1I | GCGC | 1 cut(s) | 18 |
| HinfI | GANTC | 1 cut(s) | 166 |
| HpaII | CCGG | 4 cut(s) | 56, 77, 201, 223 |
| Hpy188I | TCNGA | 3 cut(s) | 187, 255, 271 |
| Hpy188III | TCNNGA | 1 cut(s) | 209 |
| Hpy99I | CGWCG | 1 cut(s) | 187 |
| HpyAV | CCTTC | 1 cut(s) | 7 |
| HpyCH4IV | ACGT | 2 cut(s) | 51, 196 |
| HpyCH4V | TGCA | 1 cut(s) | 32 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 52, 104, 233 |
| HpyF3I | CTNAG | 1 cut(s) | 118 |
| HpySE526I | ACGT | 2 cut(s) | 51, 196 |
| Hsp92I | GRCGYC | 2 cut(s) | 18, 38 |
| HspAI | GCGC | 1 cut(s) | 18 |
| KasI | GGCGCC | 1 cut(s) | 17 |
| KflI | GGGWCCC | 1 cut(s) | 156 |
| Kzo9I | GATC | 2 cut(s) | 271, 284 |
| Lsp1109I | GCAGC | 2 cut(s) | 91, 135 |
| MaeII | ACGT | 2 cut(s) | 51, 196 |
| MaeIII | GTNAC | 2 cut(s) | 39, 192 |
| MalI | GATC | 2 cut(s) | 273, 286 |
| MboI | GATC | 2 cut(s) | 271, 284 |
| MboII | GAAGA | 1 cut(s) | 329 |
| Mly113I | GGCGCC | 1 cut(s) | 18 |
| MlyI | GAGTC | 1 cut(s) | 160 |
| MmeI | TCCRAC | 2 cut(s) | 165, 278 |
| MnlI | CCTC | 3 cut(s) | 181, 205, 257 |
| MspA1I | CMGCKG | 3 cut(s) | 104, 126, 333 |
| MspI | CCGG | 4 cut(s) | 56, 77, 201, 223 |
| MspR9I | CCNGG | 3 cut(s) | 57, 223, 224 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 52, 104, 233 |
| NarI | GGCGCC | 1 cut(s) | 18 |
| NciI | CCSGG | 3 cut(s) | 57, 223, 224 |
| NdeII | GATC | 2 cut(s) | 271, 284 |
| NlaIV | GGNNCC | 5 cut(s) | 19, 61, 157, 158, 268 |
| NmeAIII | GCCGAG | 1 cut(s) | 88 |
| NmuCI | GTSAC | 2 cut(s) | 39, 192 |
| PaeR7I | CTCGAG | 1 cut(s) | 261 |
| PflFI | GACNNNGTC | 1 cut(s) | 181 |
| PkrI | GCNGC | 4 cut(s) | 106, 125, 297, 300 |
| Ple19I | CGATCG | 1 cut(s) | 287 |
| PleI | GAGTC | 1 cut(s) | 160 |
| PluTI | GGCGCC | 1 cut(s) | 21 |
| PmaCI | CACGTG | 1 cut(s) | 197 |
| PmlI | CACGTG | 1 cut(s) | 197 |
| PpsI | GAGTC | 1 cut(s) | 160 |
| Ppu21I | YACGTR | 1 cut(s) | 197 |
| PpuMI | RGGWCCY | 1 cut(s) | 156 |
| PshAI | GACNNNNGTC | 1 cut(s) | 86 |
| Psp5II | RGGWCCY | 1 cut(s) | 156 |
| PspCI | CACGTG | 1 cut(s) | 197 |
| PspFI | CCCAGC | 3 cut(s) | 100, 159, 171 |
| PspN4I | GGNNCC | 5 cut(s) | 19, 61, 157, 158, 268 |
| PspPI | GGNCC | 4 cut(s) | 60, 137, 156, 267 |
| PspPPI | RGGWCCY | 1 cut(s) | 156 |
| PspXI | VCTCGAGB | 1 cut(s) | 261 |
| PsyI | GACNNNGTC | 1 cut(s) | 181 |
| PvuI | CGATCG | 1 cut(s) | 287 |
| PvuII | CAGCTG | 1 cut(s) | 104 |
| RsaI | GTAC | 1 cut(s) | 112 |
| RsaNI | GTAC | 1 cut(s) | 111 |
| SatI | GCNGC | 4 cut(s) | 105, 124, 296, 299 |
| Sau3AI | GATC | 2 cut(s) | 271, 284 |
| Sau96I | GGNCC | 4 cut(s) | 60, 137, 156, 267 |
| SchI | GAGTC | 1 cut(s) | 160 |
| ScrFI | CCNGG | 3 cut(s) | 57, 223, 224 |
| SetI | ASST | 5 cut(s) | 54, 106, 192, 199, 262 |
| SfcI | CTRYAG | 1 cut(s) | 237 |
| SfoI | GGCGCC | 1 cut(s) | 19 |
| Sfr274I | CTCGAG | 1 cut(s) | 261 |
| SinI | GGWCC | 2 cut(s) | 156, 267 |
| SlaI | CTCGAG | 1 cut(s) | 261 |
| SmaI | CCCGGG | 1 cut(s) | 224 |
| SmlI | CTYRAG | 1 cut(s) | 261 |
| SmoI | CTYRAG | 1 cut(s) | 261 |
| SsiI | CCGC | 9 cut(s) | 10, 74, 107, 126, 146, 227, 296, 299, 331 |
| SspDI | GGCGCC | 1 cut(s) | 17 |
| StyD4I | CCNGG | 3 cut(s) | 55, 221, 222 |
| TaiI | ACGT | 2 cut(s) | 54, 199 |
| TaqI | TCGA | 1 cut(s) | 262 |
| TaqII | GACCGA | 1 cut(s) | 277 |
| TauI | GCSGC | 2 cut(s) | 298, 301 |
| TseFI | GTSAC | 2 cut(s) | 39, 192 |
| TseI | GCWGC | 2 cut(s) | 104, 123 |
| Tsp45I | GTSAC | 2 cut(s) | 39, 192 |
| TspMI | CCCGGG | 1 cut(s) | 222 |
| Tth111I | GACNNNGTC | 1 cut(s) | 181 |
| VpaK11BI | GGWCC | 2 cut(s) | 156, 267 |
| XhoI | CTCGAG | 1 cut(s) | 261 |
| XmaI | CCCGGG | 1 cut(s) | 222 |