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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 69, 425 |
| AccBSI | CCGCTC | 2 cut(s) | 133, 145 |
| AccI | GTMKAC | 1 cut(s) | 123 |
| AciI | CCGC | 8 cut(s) | 56, 83, 133, 145, 203, 310, 377, 395 |
| AclWI | GGATC | 2 cut(s) | 201, 220 |
| AcoI | YGGCCR | 2 cut(s) | 321, 396 |
| AcsI | RAATTY | 1 cut(s) | 8 |
| AcuI | CTGAAG | 3 cut(s) | 209, 215, 434 |
| AcyI | GRCGYC | 1 cut(s) | 70 |
| AfaI | GTAC | 1 cut(s) | 356 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 25, 79, 190, 235, 316 |
| AgsI | TTSAA | 1 cut(s) | 13 |
| AluBI | AGCT | 4 cut(s) | 52, 115, 166, 299 |
| AluI | AGCT | 4 cut(s) | 52, 115, 166, 299 |
| Alw26I | GTCTC | 1 cut(s) | 163 |
| AlwI | GGATC | 2 cut(s) | 201, 220 |
| Ama87I | CYCGRG | 2 cut(s) | 20, 140 |
| AoxI | GGCC | 3 cut(s) | 39, 321, 396 |
| ApeKI | GCWGC | 1 cut(s) | 392 |
| ApoI | RAATTY | 1 cut(s) | 8 |
| AspLEI | GCGC | 1 cut(s) | 72 |
| AspS9I | GGNCC | 1 cut(s) | 136 |
| AsuHPI | GGTGA | 1 cut(s) | 274 |
| AvaI | CYCGRG | 2 cut(s) | 20, 140 |
| AvaII | GGWCC | 1 cut(s) | 136 |
| BanI | GGYRCC | 2 cut(s) | 69, 425 |
| BbvCI | CCTCAGC | 1 cut(s) | 258 |
| BbvI | GCAGC | 1 cut(s) | 379 |
| BccI | CCATC | 3 cut(s) | 91, 364, 437 |
| BceAI | ACGGC | 1 cut(s) | 308 |
| BcoDI | GTCTC | 1 cut(s) | 163 |
| BfaI | CTAG | 1 cut(s) | 167 |
| BfoI | RGCGCY | 1 cut(s) | 73 |
| BisI | GCNGC | 4 cut(s) | 204, 378, 393, 396 |
| BlsI | GCNGC | 4 cut(s) | 205, 379, 394, 397 |
| Bme18I | GGWCC | 1 cut(s) | 136 |
| BmeT110I | CYCGRG | 2 cut(s) | 20, 140 |
| BmgT120I | GGNCC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 4 cut(s) | 71, 137, 308, 427 |
| BmsI | GCATC | 2 cut(s) | 82, 91 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 143, 175 |
| BpmI | CTGGAG | 1 cut(s) | 293 |
| Bpu10I | CCTNAGC | 2 cut(s) | 207, 258 |
| BsaHI | GRCGYC | 1 cut(s) | 70 |
| BsaJI | CCNNGG | 1 cut(s) | 78 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 25, 79, 190, 235, 316 |
| BseDI | CCNNGG | 1 cut(s) | 78 |
| BseGI | GGATG | 1 cut(s) | 106 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 25, 79, 190, 235, 316 |
| BseMII | CTCAG | 2 cut(s) | 249, 291 |
| BseXI | GCAGC | 1 cut(s) | 379 |
| BshFI | GGCC | 3 cut(s) | 41, 323, 398 |
| BshNI | GGYRCC | 2 cut(s) | 69, 425 |
| BsiHKCI | CYCGRG | 2 cut(s) | 20, 140 |
| BslFI | GGGAC | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 25, 79, 190, 235, 316 |
| BsmAI | GTCTC | 1 cut(s) | 163 |
| BsmFI | GGGAC | 1 cut(s) | 149 |
| BsnI | GGCC | 3 cut(s) | 41, 323, 398 |
| BsoBI | CYCGRG | 2 cut(s) | 20, 140 |
| Bsp143I | GATC | 2 cut(s) | 193, 225 |
| BspACI | CCGC | 8 cut(s) | 56, 83, 133, 145, 203, 310, 377, 395 |
| BspANI | GGCC | 3 cut(s) | 41, 323, 398 |
| BspCNI | CTCAG | 2 cut(s) | 250, 292 |
| BspLI | GGNNCC | 4 cut(s) | 71, 137, 308, 427 |
| BspPI | GGATC | 2 cut(s) | 201, 220 |
| BspT107I | GGYRCC | 2 cut(s) | 69, 425 |
| BsrBI | CCGCTC | 2 cut(s) | 133, 145 |
| BssECI | CCNNGG | 1 cut(s) | 78 |
| BssMI | GATC | 2 cut(s) | 193, 225 |
| BssNI | GRCGYC | 1 cut(s) | 70 |
| BssT1I | CCWWGG | 1 cut(s) | 78 |
| Bst6I | CTCTTC | 1 cut(s) | 260 |
| BstACI | GRCGYC | 1 cut(s) | 70 |
| BstC8I | GCNNGC | 2 cut(s) | 54, 363 |
| BstDEI | CTNAG | 5 cut(s) | 207, 213, 249, 258, 300 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 77, 188, 233 |
| BstF5I | GGATG | 1 cut(s) | 106 |
| BstH2I | RGCGCY | 1 cut(s) | 73 |
| BstHHI | GCGC | 1 cut(s) | 72 |
| BstKTI | GATC | 2 cut(s) | 196, 228 |
| BstMAI | GTCTC | 1 cut(s) | 163 |
| BstMBI | GATC | 2 cut(s) | 193, 225 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 101, 151, 209, 383, 392 |
| BstNSI | RCATGY | 1 cut(s) | 158 |
| BstV1I | GCAGC | 1 cut(s) | 379 |
| BstX2I | RGATCY | 1 cut(s) | 225 |
| BstYI | RGATCY | 1 cut(s) | 225 |
| BsuRI | GGCC | 3 cut(s) | 41, 323, 398 |
| BtgZI | GCGATG | 1 cut(s) | 110 |
| BtsCI | GGATG | 1 cut(s) | 106 |
| Cac8I | GCNNGC | 2 cut(s) | 54, 363 |
| CfoI | GCGC | 1 cut(s) | 72 |
| Cfr13I | GGNCC | 1 cut(s) | 136 |
| Csp6I | GTAC | 1 cut(s) | 355 |
| CviAII | CATG | 2 cut(s) | 155, 367 |
| CviQI | GTAC | 1 cut(s) | 355 |
| DdeI | CTNAG | 5 cut(s) | 207, 213, 249, 258, 300 |
| DinI | GGCGCC | 1 cut(s) | 71 |
| DpnI | GATC | 2 cut(s) | 195, 227 |
| DpnII | GATC | 2 cut(s) | 193, 225 |
| EaeI | YGGCCR | 2 cut(s) | 321, 396 |
| Eam1104I | CTCTTC | 1 cut(s) | 260 |
| EarI | CTCTTC | 1 cut(s) | 260 |
| EciI | GGCGGA | 2 cut(s) | 71, 98 |
| Eco130I | CCWWGG | 1 cut(s) | 78 |
| Eco47I | GGWCC | 1 cut(s) | 136 |
| Eco57I | CTGAAG | 3 cut(s) | 209, 215, 434 |
| Eco88I | CYCGRG | 2 cut(s) | 20, 140 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 77, 188, 233 |
| EcoO109I | RGGNCCY | 1 cut(s) | 136 |
| EcoRI | GAATTC | 1 cut(s) | 8 |
| EcoT14I | CCWWGG | 1 cut(s) | 78 |
| EgeI | GGCGCC | 1 cut(s) | 71 |
| EheI | GGCGCC | 1 cut(s) | 71 |
| ErhI | CCWWGG | 1 cut(s) | 78 |
| FaeI | CATG | 2 cut(s) | 158, 370 |
| FaiI | YATR | 6 cut(s) | 156, 179, 314, 350, 368, 410 |
| FaqI | GGGAC | 1 cut(s) | 149 |
| FatI | CATG | 2 cut(s) | 154, 366 |
| FauI | CCCGC | 1 cut(s) | 126 |
| FblI | GTMKAC | 1 cut(s) | 123 |
| Fnu4HI | GCNGC | 4 cut(s) | 204, 378, 393, 396 |
| FokI | GGATG | 1 cut(s) | 113 |
| Fsp4HI | GCNGC | 4 cut(s) | 204, 378, 393, 396 |
| FspBI | CTAG | 1 cut(s) | 167 |
| GlaI | GCGC | 1 cut(s) | 71 |
| GluI | GCNGC | 4 cut(s) | 204, 378, 393, 396 |
| GsuI | CTGGAG | 1 cut(s) | 293 |
| HaeII | RGCGCY | 1 cut(s) | 73 |
| HaeIII | GGCC | 3 cut(s) | 41, 323, 398 |
| HhaI | GCGC | 1 cut(s) | 72 |
| Hin1I | GRCGYC | 1 cut(s) | 70 |
| Hin1II | CATG | 2 cut(s) | 158, 370 |
| Hin6I | GCGC | 1 cut(s) | 70 |
| HinP1I | GCGC | 1 cut(s) | 70 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HinfI | GANTC | 1 cut(s) | 239 |
| HphI | GGTGA | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 1 cut(s) | 124 |
| Hpy188III | TCNNGA | 2 cut(s) | 22, 293 |
| Hpy8I | GTNNAC | 1 cut(s) | 124 |
| Hpy99I | CGWCG | 1 cut(s) | 128 |
| HpyAV | CCTTC | 4 cut(s) | 184, 239, 376, 415 |
| HpyCH4IV | ACGT | 2 cut(s) | 60, 126 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 101, 151, 209, 383, 392 |
| HpyF3I | CTNAG | 5 cut(s) | 207, 213, 249, 258, 300 |
| HpySE526I | ACGT | 2 cut(s) | 60, 126 |
| Hsp92I | GRCGYC | 1 cut(s) | 70 |
| Hsp92II | CATG | 2 cut(s) | 158, 370 |
| HspAI | GCGC | 1 cut(s) | 70 |
| KasI | GGCGCC | 1 cut(s) | 69 |
| Kzo9I | GATC | 2 cut(s) | 193, 225 |
| LpnPI | CCDG | 6 cut(s) | 38, 86, 221, 257, 278, 372 |
| Lsp1109I | GCAGC | 1 cut(s) | 379 |
| LweI | GCATC | 2 cut(s) | 82, 91 |
| MaeI | CTAG | 1 cut(s) | 167 |
| MaeII | ACGT | 2 cut(s) | 60, 126 |
| MaeIII | GTNAC | 1 cut(s) | 30 |
| MalI | GATC | 2 cut(s) | 195, 227 |
| MbiI | CCGCTC | 2 cut(s) | 133, 145 |
| MboI | GATC | 2 cut(s) | 193, 225 |
| MboII | GAAGA | 1 cut(s) | 277 |
| MflI | RGATCY | 1 cut(s) | 225 |
| MluCI | AATT | 1 cut(s) | 8 |
| Mly113I | GGCGCC | 1 cut(s) | 70 |
| MseI | TTAA | 2 cut(s) | 63, 339 |
| MslI | CAYNNNNRTG | 1 cut(s) | 317 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 101, 151, 209, 383, 392 |
| NarI | GGCGCC | 1 cut(s) | 70 |
| NdeII | GATC | 2 cut(s) | 193, 225 |
| NlaIII | CATG | 2 cut(s) | 158, 370 |
| NlaIV | GGNNCC | 4 cut(s) | 71, 137, 308, 427 |
| NspI | RCATGY | 1 cut(s) | 158 |
| PaeR7I | CTCGAG | 2 cut(s) | 20, 140 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 147 |
| PfeI | GAWTC | 1 cut(s) | 239 |
| PflFI | GACNNNGTC | 1 cut(s) | 179 |
| PkrI | GCNGC | 4 cut(s) | 205, 379, 394, 397 |
| PluTI | GGCGCC | 1 cut(s) | 73 |
| PpuMI | RGGWCCY | 1 cut(s) | 136 |
| Psp5II | RGGWCCY | 1 cut(s) | 136 |
| PspN4I | GGNNCC | 4 cut(s) | 71, 137, 308, 427 |
| PspPI | GGNCC | 1 cut(s) | 136 |
| PspPPI | RGGWCCY | 1 cut(s) | 136 |
| PspXI | VCTCGAGB | 1 cut(s) | 140 |
| PsuI | RGATCY | 1 cut(s) | 225 |
| PsyI | GACNNNGTC | 1 cut(s) | 179 |
| RsaI | GTAC | 1 cut(s) | 356 |
| RsaNI | GTAC | 1 cut(s) | 355 |
| RseI | CAYNNNNRTG | 1 cut(s) | 317 |
| SalI | GTCGAC | 1 cut(s) | 122 |
| SaqAI | TTAA | 2 cut(s) | 63, 339 |
| SatI | GCNGC | 4 cut(s) | 204, 378, 393, 396 |
| Sau3AI | GATC | 2 cut(s) | 193, 225 |
| Sau96I | GGNCC | 1 cut(s) | 136 |
| SfaNI | GCATC | 2 cut(s) | 82, 91 |
| SfoI | GGCGCC | 1 cut(s) | 71 |
| Sfr274I | CTCGAG | 2 cut(s) | 20, 140 |
| SinI | GGWCC | 1 cut(s) | 136 |
| SlaI | CTCGAG | 2 cut(s) | 20, 140 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 317 |
| SmlI | CTYRAG | 2 cut(s) | 20, 140 |
| SmoI | CTYRAG | 2 cut(s) | 20, 140 |
| Sse9I | AATT | 1 cut(s) | 8 |
| SsiI | CCGC | 8 cut(s) | 56, 83, 133, 145, 203, 310, 377, 395 |
| SspDI | GGCGCC | 1 cut(s) | 69 |
| SspMI | CTAG | 1 cut(s) | 167 |
| StyI | CCWWGG | 1 cut(s) | 78 |
| TaiI | ACGT | 2 cut(s) | 63, 129 |
| TaqI | TCGA | 3 cut(s) | 21, 123, 141 |
| TasI | AATT | 1 cut(s) | 8 |
| TatI | WGTACW | 1 cut(s) | 354 |
| TauI | GCSGC | 3 cut(s) | 206, 380, 398 |
| TfiI | GAWTC | 1 cut(s) | 239 |
| Tru1I | TTAA | 2 cut(s) | 63, 339 |
| Tru9I | TTAA | 2 cut(s) | 63, 339 |
| TseI | GCWGC | 1 cut(s) | 392 |
| TspDTI | ATGAA | 1 cut(s) | 365 |
| Tth111I | GACNNNGTC | 1 cut(s) | 179 |
| VpaK11BI | GGWCC | 1 cut(s) | 136 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 77, 188, 233 |
| XapI | RAATTY | 1 cut(s) | 8 |
| XceI | RCATGY | 1 cut(s) | 158 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 49 |
| XhoI | CTCGAG | 2 cut(s) | 20, 140 |
| XmiI | GTMKAC | 1 cut(s) | 123 |
| XspI | CTAG | 1 cut(s) | 167 |