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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 192 |
| AccB1I | GGYRCC | 3 cut(s) | 149, 228, 247 |
| AccBSI | CCGCTC | 5 cut(s) | 419, 646, 721, 787, 799 |
| AccII | CGCG | 3 cut(s) | 9, 223, 504 |
| AclWI | GGATC | 2 cut(s) | 547, 855 |
| AcuI | CTGAAG | 4 cut(s) | 553, 657, 863, 869 |
| AcyI | GRCGYC | 1 cut(s) | 150 |
| AfaI | GTAC | 1 cut(s) | 41 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 225, 276 |
| AgsI | TTSAA | 1 cut(s) | 655 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 540 |
| AjiI | CACGTC | 1 cut(s) | 450 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 476, 508 |
| AluBI | AGCT | 7 cut(s) | 392, 573, 601, 685, 706, 769, 836 |
| AluI | AGCT | 7 cut(s) | 392, 573, 601, 685, 706, 769, 836 |
| Alw26I | GTCTC | 1 cut(s) | 677 |
| AlwI | GGATC | 2 cut(s) | 547, 855 |
| Ama87I | CYCGRG | 1 cut(s) | 794 |
| AoxI | GGCC | 2 cut(s) | 174, 864 |
| ApeKI | GCWGC | 3 cut(s) | 193, 424, 601 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 460, 492 |
| AseI | ATTAAT | 1 cut(s) | 18 |
| AspLEI | GCGC | 4 cut(s) | 152, 193, 211, 726 |
| AspS9I | GGNCC | 5 cut(s) | 4, 175, 534, 693, 790 |
| AvaI | CYCGRG | 1 cut(s) | 794 |
| AvaII | GGWCC | 4 cut(s) | 4, 534, 693, 790 |
| BaeGI | GKGCMC | 1 cut(s) | 252 |
| BanI | GGYRCC | 3 cut(s) | 149, 228, 247 |
| BanII | GRGCYC | 1 cut(s) | 357 |
| BbvI | GCAGC | 3 cut(s) | 205, 436, 588 |
| BccI | CCATC | 1 cut(s) | 524 |
| BceAI | ACGGC | 1 cut(s) | 564 |
| BcoDI | GTCTC | 1 cut(s) | 677 |
| BfaI | CTAG | 5 cut(s) | 29, 281, 437, 512, 821 |
| BfmI | CTRYAG | 1 cut(s) | 686 |
| BfoI | RGCGCY | 3 cut(s) | 153, 212, 727 |
| Bme18I | GGWCC | 4 cut(s) | 4, 534, 693, 790 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 540 |
| BmeT110I | CYCGRG | 1 cut(s) | 794 |
| BmgBI | CACGTC | 1 cut(s) | 450 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 175, 534, 693, 790 |
| BmiI | GGNNCC | 8 cut(s) | 151, 177, 230, 249, 261, 535, 694, 791 |
| BmrI | ACTGGG | 1 cut(s) | 369 |
| BmsI | GCATC | 4 cut(s) | 117, 282, 595, 745 |
| BmuI | ACTGGG | 1 cut(s) | 369 |
| BpmI | CTGGAG | 2 cut(s) | 435, 728 |
| BsaHI | GRCGYC | 1 cut(s) | 150 |
| BsaI | GGTCTC | 1 cut(s) | 677 |
| BsaJI | CCNNGG | 2 cut(s) | 255, 732 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 476, 506, 797, 827 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 225, 276 |
| Bse1I | ACTGG | 3 cut(s) | 100, 263, 364 |
| Bse3DI | GCAATG | 1 cut(s) | 270 |
| BseDI | CCNNGG | 2 cut(s) | 255, 732 |
| BseGI | GGATG | 3 cut(s) | 535, 718, 760 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 225, 276 |
| BseMI | GCAATG | 1 cut(s) | 270 |
| BseNI | ACTGG | 3 cut(s) | 100, 263, 364 |
| BseRI | GAGGAG | 3 cut(s) | 341, 344, 347 |
| BseSI | GKGCMC | 1 cut(s) | 252 |
| BseXI | GCAGC | 3 cut(s) | 205, 436, 588 |
| BseYI | CCCAGC | 1 cut(s) | 47 |
| BsgI | GTGCAG | 1 cut(s) | 443 |
| Bsh1236I | CGCG | 3 cut(s) | 9, 223, 504 |
| Bsh1285I | CGRYCG | 1 cut(s) | 75 |
| BshFI | GGCC | 2 cut(s) | 176, 866 |
| BshNI | GGYRCC | 3 cut(s) | 149, 228, 247 |
| BsiEI | CGRYCG | 1 cut(s) | 75 |
| BsiHKCI | CYCGRG | 1 cut(s) | 794 |
| BslFI | GGGAC | 3 cut(s) | 547, 706, 803 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 225, 276 |
| BsmAI | GTCTC | 1 cut(s) | 677 |
| BsmFI | GGGAC | 3 cut(s) | 547, 706, 803 |
| BsnI | GGCC | 2 cut(s) | 176, 866 |
| Bso31I | GGTCTC | 1 cut(s) | 677 |
| BsoBI | CYCGRG | 1 cut(s) | 794 |
| Bsp1286I | GDGCHC | 2 cut(s) | 252, 357 |
| Bsp143I | GATC | 4 cut(s) | 76, 433, 552, 847 |
| BspANI | GGCC | 2 cut(s) | 176, 866 |
| BspFNI | CGCG | 3 cut(s) | 9, 223, 504 |
| BspLI | GGNNCC | 8 cut(s) | 151, 177, 230, 249, 261, 535, 694, 791 |
| BspPI | GGATC | 2 cut(s) | 547, 855 |
| BspT107I | GGYRCC | 3 cut(s) | 149, 228, 247 |
| BspTNI | GGTCTC | 1 cut(s) | 677 |
| BsrBI | CCGCTC | 5 cut(s) | 419, 646, 721, 787, 799 |
| BsrDI | GCAATG | 1 cut(s) | 270 |
| BsrI | ACTGG | 3 cut(s) | 100, 263, 364 |
| BssECI | CCNNGG | 2 cut(s) | 255, 732 |
| BssMI | GATC | 4 cut(s) | 76, 433, 552, 847 |
| BssNI | GRCGYC | 1 cut(s) | 150 |
| BssT1I | CCWWGG | 2 cut(s) | 255, 732 |
| Bst4CI | ACNGT | 3 cut(s) | 73, 538, 622 |
| Bst6I | CTCTTC | 1 cut(s) | 371 |
| BstACI | GRCGYC | 1 cut(s) | 150 |
| BstC8I | GCNNGC | 7 cut(s) | 54, 189, 213, 390, 524, 760, 767 |
| BstF5I | GGATG | 3 cut(s) | 535, 718, 760 |
| BstFNI | CGCG | 3 cut(s) | 9, 223, 504 |
| BstH2I | RGCGCY | 3 cut(s) | 153, 212, 727 |
| BstHHI | GCGC | 4 cut(s) | 152, 193, 211, 726 |
| BstKTI | GATC | 4 cut(s) | 79, 436, 555, 850 |
| BstMAI | GTCTC | 1 cut(s) | 677 |
| BstMBI | GATC | 4 cut(s) | 76, 433, 552, 847 |
| BstMCI | CGRYCG | 1 cut(s) | 75 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 53, 130, 188, 193, 286, 292, 389 |
| BstSFI | CTRYAG | 1 cut(s) | 686 |
| BstSLI | GKGCMC | 1 cut(s) | 252 |
| BstUI | CGCG | 3 cut(s) | 9, 223, 504 |
| BstV1I | GCAGC | 3 cut(s) | 205, 436, 588 |
| BsuRI | GGCC | 2 cut(s) | 176, 866 |
| BtrI | CACGTC | 1 cut(s) | 450 |
| BtsCI | GGATG | 3 cut(s) | 535, 718, 760 |
| BtsIMutI | CAGTG | 2 cut(s) | 270, 357 |
| Cac8I | GCNNGC | 7 cut(s) | 54, 189, 213, 390, 524, 760, 767 |
| CfoI | GCGC | 4 cut(s) | 152, 193, 211, 726 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 175, 534, 693, 790 |
| CseI | GACGC | 1 cut(s) | 530 |
| Csp6I | GTAC | 1 cut(s) | 40 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 287, 322 |
| CviAII | CATG | 1 cut(s) | 605 |
| CviQI | GTAC | 1 cut(s) | 40 |
| DinI | GGCGCC | 1 cut(s) | 151 |
| DpnI | GATC | 4 cut(s) | 78, 435, 554, 849 |
| DpnII | GATC | 4 cut(s) | 76, 433, 552, 847 |
| DriI | GACNNNNNGTC | 1 cut(s) | 540 |
| Eam1104I | CTCTTC | 1 cut(s) | 371 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 540 |
| EarI | CTCTTC | 1 cut(s) | 371 |
| Eco130I | CCWWGG | 2 cut(s) | 255, 732 |
| Eco24I | GRGCYC | 1 cut(s) | 357 |
| Eco31I | GGTCTC | 1 cut(s) | 677 |
| Eco47I | GGWCC | 4 cut(s) | 4, 534, 693, 790 |
| Eco57I | CTGAAG | 4 cut(s) | 553, 657, 863, 869 |
| Eco88I | CYCGRG | 1 cut(s) | 794 |
| EcoO109I | RGGNCCY | 2 cut(s) | 175, 790 |
| EcoT14I | CCWWGG | 2 cut(s) | 255, 732 |
| EcoT38I | GRGCYC | 1 cut(s) | 357 |
| EgeI | GGCGCC | 1 cut(s) | 151 |
| EheI | GGCGCC | 1 cut(s) | 151 |
| ErhI | CCWWGG | 2 cut(s) | 255, 732 |
| FaeI | CATG | 1 cut(s) | 608 |
| FaiI | YATR | 7 cut(s) | 38, 456, 606, 678, 752, 776, 833 |
| FaqI | GGGAC | 3 cut(s) | 547, 706, 803 |
| FatI | CATG | 1 cut(s) | 604 |
| FauI | CCCGC | 3 cut(s) | 228, 515, 780 |
| FokI | GGATG | 3 cut(s) | 542, 725, 767 |
| FriOI | GRGCYC | 1 cut(s) | 357 |
| FspBI | CTAG | 5 cut(s) | 29, 281, 437, 512, 821 |
| FspI | TGCGCA | 1 cut(s) | 192 |
| GlaI | GCGC | 4 cut(s) | 151, 192, 210, 725 |
| GsaI | CCCAGC | 1 cut(s) | 51 |
| GsuI | CTGGAG | 2 cut(s) | 435, 728 |
| HaeII | RGCGCY | 3 cut(s) | 153, 212, 727 |
| HaeIII | GGCC | 2 cut(s) | 176, 866 |
| HgaI | GACGC | 1 cut(s) | 530 |
| HhaI | GCGC | 4 cut(s) | 152, 193, 211, 726 |
| Hin1I | GRCGYC | 1 cut(s) | 150 |
| Hin1II | CATG | 1 cut(s) | 608 |
| Hin6I | GCGC | 4 cut(s) | 150, 191, 209, 724 |
| HinP1I | GCGC | 4 cut(s) | 150, 191, 209, 724 |
| HincII | GTYRAC | 1 cut(s) | 367 |
| HindII | GTYRAC | 1 cut(s) | 367 |
| HindIII | AAGCTT | 1 cut(s) | 390 |
| HinfI | GANTC | 3 cut(s) | 158, 473, 880 |
| Hpy166II | GTNNAC | 1 cut(s) | 367 |
| Hpy188I | TCNGA | 3 cut(s) | 106, 468, 546 |
| Hpy188III | TCNNGA | 2 cut(s) | 29, 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 367 |
| Hpy99I | CGWCG | 2 cut(s) | 158, 550 |
| HpyAV | CCTTC | 5 cut(s) | 229, 577, 589, 649, 838 |
| HpyCH4III | ACNGT | 3 cut(s) | 73, 538, 622 |
| HpyCH4IV | ACGT | 2 cut(s) | 449, 747 |
| HpyCH4V | TGCA | 4 cut(s) | 82, 295, 424, 604 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 53, 130, 188, 193, 286, 292, 389 |
| HpySE526I | ACGT | 2 cut(s) | 449, 747 |
| Hsp92I | GRCGYC | 1 cut(s) | 150 |
| Hsp92II | CATG | 1 cut(s) | 608 |
| HspAI | GCGC | 4 cut(s) | 150, 191, 209, 724 |
| KasI | GGCGCC | 1 cut(s) | 149 |
| Kzo9I | GATC | 4 cut(s) | 76, 433, 552, 847 |
| LmnI | GCTCC | 4 cut(s) | 416, 598, 682, 718 |
| Lsp1109I | GCAGC | 3 cut(s) | 205, 436, 588 |
| LweI | GCATC | 4 cut(s) | 117, 282, 595, 745 |
| MaeI | CTAG | 5 cut(s) | 29, 281, 437, 512, 821 |
| MaeII | ACGT | 2 cut(s) | 449, 747 |
| MaeIII | GTNAC | 2 cut(s) | 265, 624 |
| MalI | GATC | 4 cut(s) | 78, 435, 554, 849 |
| MbiI | CCGCTC | 5 cut(s) | 419, 646, 721, 787, 799 |
| MboI | GATC | 4 cut(s) | 76, 433, 552, 847 |
| MboII | GAAGA | 2 cut(s) | 388, 875 |
| MfeI | CAATTG | 1 cut(s) | 650 |
| MhlI | GDGCHC | 2 cut(s) | 252, 357 |
| MluCI | AATT | 1 cut(s) | 650 |
| Mly113I | GGCGCC | 1 cut(s) | 150 |
| MlyI | GAGTC | 1 cut(s) | 467 |
| MmeI | TCCRAC | 2 cut(s) | 569, 580 |
| MseI | TTAA | 2 cut(s) | 18, 617 |
| MspA1I | CMGCKG | 2 cut(s) | 47, 762 |
| MunI | CAATTG | 1 cut(s) | 650 |
| MvnI | CGCG | 3 cut(s) | 9, 223, 504 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 53, 130, 188, 193, 286, 292, 389 |
| NarI | GGCGCC | 1 cut(s) | 150 |
| NdeII | GATC | 4 cut(s) | 76, 433, 552, 847 |
| NlaIII | CATG | 1 cut(s) | 608 |
| NlaIV | GGNNCC | 8 cut(s) | 151, 177, 230, 249, 261, 535, 694, 791 |
| NmeAIII | GCCGAG | 1 cut(s) | 126 |
| NmuCI | GTSAC | 2 cut(s) | 265, 624 |
| NsbI | TGCGCA | 1 cut(s) | 192 |
| PaeR7I | CTCGAG | 1 cut(s) | 794 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 153, 162, 801 |
| PfeI | GAWTC | 2 cut(s) | 158, 880 |
| PleI | GAGTC | 1 cut(s) | 467 |
| PluTI | GGCGCC | 1 cut(s) | 153 |
| PpsI | GAGTC | 1 cut(s) | 467 |
| PpuMI | RGGWCCY | 1 cut(s) | 790 |
| PshBI | ATTAAT | 1 cut(s) | 18 |
| Psp5II | RGGWCCY | 1 cut(s) | 790 |
| PspFI | CCCAGC | 1 cut(s) | 47 |
| PspN4I | GGNNCC | 8 cut(s) | 151, 177, 230, 249, 261, 535, 694, 791 |
| PspPI | GGNCC | 5 cut(s) | 4, 175, 534, 693, 790 |
| PspPPI | RGGWCCY | 1 cut(s) | 790 |
| PspXI | VCTCGAGB | 1 cut(s) | 794 |
| RsaI | GTAC | 1 cut(s) | 41 |
| RsaNI | GTAC | 1 cut(s) | 40 |
| SaqAI | TTAA | 2 cut(s) | 18, 617 |
| Sau3AI | GATC | 4 cut(s) | 76, 433, 552, 847 |
| Sau96I | GGNCC | 5 cut(s) | 4, 175, 534, 693, 790 |
| SchI | GAGTC | 1 cut(s) | 467 |
| SduI | GDGCHC | 2 cut(s) | 252, 357 |
| SfaNI | GCATC | 4 cut(s) | 117, 282, 595, 745 |
| SfcI | CTRYAG | 1 cut(s) | 686 |
| SfoI | GGCGCC | 1 cut(s) | 151 |
| Sfr274I | CTCGAG | 1 cut(s) | 794 |
| SinI | GGWCC | 4 cut(s) | 4, 534, 693, 790 |
| SlaI | CTCGAG | 1 cut(s) | 794 |
| SmlI | CTYRAG | 1 cut(s) | 794 |
| SmoI | CTYRAG | 1 cut(s) | 794 |
| Sse9I | AATT | 1 cut(s) | 650 |
| SspDI | GGCGCC | 1 cut(s) | 149 |
| SspMI | CTAG | 5 cut(s) | 29, 281, 437, 512, 821 |
| StyI | CCWWGG | 2 cut(s) | 255, 732 |
| TaaI | ACNGT | 3 cut(s) | 73, 538, 622 |
| TaiI | ACGT | 2 cut(s) | 452, 750 |
| TaqI | TCGA | 3 cut(s) | 75, 563, 795 |
| TasI | AATT | 1 cut(s) | 650 |
| TauI | GCSGC | 7 cut(s) | 47, 59, 133, 289, 649, 724, 765 |
| TfiI | GAWTC | 2 cut(s) | 158, 880 |
| Tru1I | TTAA | 2 cut(s) | 18, 617 |
| Tru9I | TTAA | 2 cut(s) | 18, 617 |
| TscAI | CASTG | 2 cut(s) | 270, 364 |
| TseFI | GTSAC | 2 cut(s) | 265, 624 |
| TseI | GCWGC | 3 cut(s) | 193, 424, 601 |
| Tsp45I | GTSAC | 2 cut(s) | 265, 624 |
| TspRI | CASTG | 2 cut(s) | 270, 364 |
| VpaK11BI | GGWCC | 4 cut(s) | 4, 534, 693, 790 |
| VspI | ATTAAT | 1 cut(s) | 18 |
| XbaI | TCTAGA | 2 cut(s) | 28, 436 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 703 |
| XhoI | CTCGAG | 1 cut(s) | 794 |
| XspI | CTAG | 5 cut(s) | 29, 281, 437, 512, 821 |