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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 10, 409 |
| Acc36I | ACCTGC | 2 cut(s) | 10, 409 |
| AccBSI | CCGCTC | 2 cut(s) | 289, 367 |
| AccI | GTMKAC | 2 cut(s) | 78, 444 |
| AccII | CGCG | 2 cut(s) | 83, 330 |
| AclWI | GGATC | 1 cut(s) | 694 |
| AcoI | YGGCCR | 3 cut(s) | 208, 667, 810 |
| AcsI | RAATTY | 1 cut(s) | 110 |
| AcuI | CTGAAG | 1 cut(s) | 437 |
| AfaI | GTAC | 2 cut(s) | 535, 586 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 457, 830 |
| AflIII | ACRYGT | 1 cut(s) | 711 |
| AgsI | TTSAA | 1 cut(s) | 182 |
| AjiI | CACGTC | 1 cut(s) | 712 |
| AjnI | CCWGG | 2 cut(s) | 240, 807 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 125, 157 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 101, 133 |
| AluBI | AGCT | 5 cut(s) | 106, 136, 198, 235, 337 |
| AluI | AGCT | 5 cut(s) | 106, 136, 198, 235, 337 |
| Alw26I | GTCTC | 2 cut(s) | 647, 720 |
| AlwI | GGATC | 1 cut(s) | 694 |
| Ama87I | CYCGRG | 2 cut(s) | 389, 717 |
| AoxI | GGCC | 9 cut(s) | 9, 208, 267, 474, 540, 667, 688, 720, 810 |
| ApeKI | GCWGC | 1 cut(s) | 226 |
| ApoI | RAATTY | 1 cut(s) | 110 |
| AspLEI | GCGC | 1 cut(s) | 739 |
| AspS9I | GGNCC | 3 cut(s) | 688, 720, 756 |
| AsuC2I | CCSGG | 1 cut(s) | 511 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 613 |
| AsuII | TTCGAA | 1 cut(s) | 101 |
| AvaI | CYCGRG | 2 cut(s) | 389, 717 |
| AvaII | GGWCC | 1 cut(s) | 756 |
| BalI | TGGCCA | 1 cut(s) | 812 |
| BanII | GRGCYC | 1 cut(s) | 776 |
| BauI | CACGAG | 1 cut(s) | 783 |
| BbvCI | CCTCAGC | 1 cut(s) | 501 |
| BbvI | GCAGC | 1 cut(s) | 213 |
| BccI | CCATC | 4 cut(s) | 149, 586, 746, 767 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 424, 458 |
| BciT130I | CCWGG | 2 cut(s) | 242, 809 |
| BcnI | CCSGG | 1 cut(s) | 511 |
| BcoDI | GTCTC | 2 cut(s) | 647, 720 |
| BfuAI | ACCTGC | 2 cut(s) | 10, 409 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 473 |
| BglII | AGATCT | 1 cut(s) | 481 |
| BisI | GCNGC | 5 cut(s) | 227, 290, 468, 670, 735 |
| BlpI | GCTNAGC | 1 cut(s) | 338 |
| BlsI | GCNGC | 5 cut(s) | 228, 291, 469, 671, 736 |
| Bme1390I | CCNGG | 3 cut(s) | 242, 511, 809 |
| Bme18I | GGWCC | 1 cut(s) | 756 |
| BmeT110I | CYCGRG | 2 cut(s) | 389, 717 |
| BmgBI | CACGTC | 1 cut(s) | 712 |
| BmgT120I | GGNCC | 3 cut(s) | 688, 720, 756 |
| BmiI | GGNNCC | 2 cut(s) | 757, 790 |
| BmrFI | CCNGG | 3 cut(s) | 242, 511, 809 |
| BmsI | GCATC | 3 cut(s) | 250, 313, 607 |
| BpmI | CTGGAG | 1 cut(s) | 296 |
| Bpu10I | CCTNAGC | 2 cut(s) | 264, 501 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 338 |
| Bpu14I | TTCGAA | 1 cut(s) | 101 |
| BpuMI | CCSGG | 1 cut(s) | 511 |
| BsaJI | CCNNGG | 4 cut(s) | 300, 318, 328, 471 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 278, 308 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 457, 830 |
| Bse118I | RCCGGY | 1 cut(s) | 384 |
| Bse1I | ACTGG | 4 cut(s) | 156, 279, 703, 801 |
| BseBI | CCWGG | 2 cut(s) | 242, 809 |
| BseDI | CCNNGG | 4 cut(s) | 300, 318, 328, 471 |
| BseGI | GGATG | 4 cut(s) | 160, 265, 328, 447 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 457, 830 |
| BseMII | CTCAG | 6 cut(s) | 278, 492, 492, 513, 658, 761 |
| BseNI | ACTGG | 4 cut(s) | 156, 279, 703, 801 |
| BseX3I | CGGCCG | 1 cut(s) | 667 |
| BseXI | GCAGC | 1 cut(s) | 213 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| Bsh1236I | CGCG | 2 cut(s) | 83, 330 |
| Bsh1285I | CGRYCG | 1 cut(s) | 670 |
| BshFI | GGCC | 9 cut(s) | 11, 210, 269, 476, 542, 669, 690, 722, 812 |
| BsiEI | CGRYCG | 1 cut(s) | 670 |
| BsiHKCI | CYCGRG | 2 cut(s) | 389, 717 |
| BsiSI | CCGG | 2 cut(s) | 385, 511 |
| BslFI | GGGAC | 2 cut(s) | 172, 769 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 457, 830 |
| BsmAI | GTCTC | 2 cut(s) | 647, 720 |
| BsmBI | CGTCTC | 1 cut(s) | 647 |
| BsmFI | GGGAC | 2 cut(s) | 172, 769 |
| BsnI | GGCC | 9 cut(s) | 11, 210, 269, 476, 542, 669, 690, 722, 812 |
| BsoBI | CYCGRG | 2 cut(s) | 389, 717 |
| Bsp119I | TTCGAA | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 1 cut(s) | 776 |
| Bsp143I | GATC | 3 cut(s) | 481, 529, 699 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 338 |
| BspANI | GGCC | 9 cut(s) | 11, 210, 269, 476, 542, 669, 690, 722, 812 |
| BspCNI | CTCAG | 6 cut(s) | 277, 491, 493, 514, 657, 762 |
| BspFNI | CGCG | 2 cut(s) | 83, 330 |
| BspHI | TCATGA | 2 cut(s) | 361, 762 |
| BspLI | GGNNCC | 2 cut(s) | 757, 790 |
| BspMI | ACCTGC | 2 cut(s) | 10, 409 |
| BspPI | GGATC | 1 cut(s) | 694 |
| BspT104I | TTCGAA | 1 cut(s) | 101 |
| BsrBI | CCGCTC | 2 cut(s) | 289, 367 |
| BsrFI | RCCGGY | 1 cut(s) | 384 |
| BsrI | ACTGG | 4 cut(s) | 156, 279, 703, 801 |
| BssAI | RCCGGY | 1 cut(s) | 384 |
| BssECI | CCNNGG | 4 cut(s) | 300, 318, 328, 471 |
| BssMI | GATC | 3 cut(s) | 481, 529, 699 |
| BssSI | CACGAG | 1 cut(s) | 783 |
| BssT1I | CCWWGG | 3 cut(s) | 300, 318, 471 |
| Bst2BI | CACGAG | 1 cut(s) | 783 |
| Bst2UI | CCWGG | 2 cut(s) | 242, 809 |
| Bst4CI | ACNGT | 3 cut(s) | 28, 163, 829 |
| BstBI | TTCGAA | 1 cut(s) | 101 |
| BstC8I | GCNNGC | 5 cut(s) | 9, 59, 328, 650, 654 |
| BstDEI | CTNAG | 9 cut(s) | 39, 264, 338, 478, 501, 522, 537, 644, 770 |
| BstDSI | CCRYGG | 1 cut(s) | 328 |
| BstEII | GGTNACC | 2 cut(s) | 22, 505 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 455 |
| BstF5I | GGATG | 4 cut(s) | 160, 265, 328, 447 |
| BstFNI | CGCG | 2 cut(s) | 83, 330 |
| BstHHI | GCGC | 1 cut(s) | 739 |
| BstKTI | GATC | 3 cut(s) | 484, 532, 702 |
| BstMAI | GTCTC | 2 cut(s) | 647, 720 |
| BstMBI | GATC | 3 cut(s) | 481, 529, 699 |
| BstMCI | CGRYCG | 1 cut(s) | 670 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 58, 232, 473, 554 |
| BstNI | CCWGG | 2 cut(s) | 242, 809 |
| BstPI | GGTNACC | 2 cut(s) | 22, 505 |
| BstSCI | CCNGG | 3 cut(s) | 240, 509, 807 |
| BstUI | CGCG | 2 cut(s) | 83, 330 |
| BstV1I | GCAGC | 1 cut(s) | 213 |
| BstX2I | RGATCY | 1 cut(s) | 481 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 730, 808 |
| BstYI | RGATCY | 1 cut(s) | 481 |
| BstZI | CGGCCG | 1 cut(s) | 667 |
| BsuRI | GGCC | 9 cut(s) | 11, 210, 269, 476, 542, 669, 690, 722, 812 |
| BtgI | CCRYGG | 1 cut(s) | 328 |
| BtrI | CACGTC | 1 cut(s) | 712 |
| BtsCI | GGATG | 4 cut(s) | 160, 265, 328, 447 |
| BtsI | GCAGTG | 1 cut(s) | 777 |
| BtsIMutI | CAGTG | 3 cut(s) | 767, 777, 834 |
| BveI | ACCTGC | 2 cut(s) | 10, 409 |
| Cac8I | GCNNGC | 5 cut(s) | 9, 59, 328, 650, 654 |
| CciI | TCATGA | 2 cut(s) | 361, 762 |
| CfoI | GCGC | 1 cut(s) | 739 |
| Cfr10I | RCCGGY | 1 cut(s) | 384 |
| Cfr13I | GGNCC | 3 cut(s) | 688, 720, 756 |
| Cfr42I | CCGCGG | 1 cut(s) | 331 |
| Csp6I | GTAC | 2 cut(s) | 534, 585 |
| CviAII | CATG | 4 cut(s) | 230, 362, 589, 763 |
| CviQI | GTAC | 2 cut(s) | 534, 585 |
| DdeI | CTNAG | 9 cut(s) | 39, 264, 338, 478, 501, 522, 537, 644, 770 |
| DpnI | GATC | 3 cut(s) | 483, 531, 701 |
| DpnII | GATC | 3 cut(s) | 481, 529, 699 |
| EaeI | YGGCCR | 3 cut(s) | 208, 667, 810 |
| EagI | CGGCCG | 1 cut(s) | 667 |
| EciI | GGCGGA | 4 cut(s) | 162, 272, 320, 440 |
| EclXI | CGGCCG | 1 cut(s) | 667 |
| Eco130I | CCWWGG | 3 cut(s) | 300, 318, 471 |
| Eco147I | AGGCCT | 2 cut(s) | 11, 476 |
| Eco24I | GRGCYC | 1 cut(s) | 776 |
| Eco47I | GGWCC | 1 cut(s) | 756 |
| Eco52I | CGGCCG | 1 cut(s) | 667 |
| Eco57I | CTGAAG | 1 cut(s) | 437 |
| Eco88I | CYCGRG | 2 cut(s) | 389, 717 |
| Eco91I | GGTNACC | 2 cut(s) | 22, 505 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 455 |
| EcoO109I | RGGNCCY | 1 cut(s) | 688 |
| EcoO65I | GGTNACC | 2 cut(s) | 22, 505 |
| EcoRI | GAATTC | 1 cut(s) | 110 |
| EcoRII | CCWGG | 2 cut(s) | 240, 807 |
| EcoT14I | CCWWGG | 3 cut(s) | 300, 318, 471 |
| EcoT38I | GRGCYC | 1 cut(s) | 776 |
| ErhI | CCWWGG | 3 cut(s) | 300, 318, 471 |
| Esp3I | CGTCTC | 1 cut(s) | 647 |
| FaeI | CATG | 4 cut(s) | 233, 365, 592, 766 |
| FaiI | YATR | 6 cut(s) | 231, 363, 590, 658, 708, 764 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 125, 157 |
| FaqI | GGGAC | 2 cut(s) | 172, 769 |
| FatI | CATG | 4 cut(s) | 229, 361, 588, 762 |
| FauI | CCCGC | 2 cut(s) | 335, 600 |
| FblI | GTMKAC | 2 cut(s) | 78, 444 |
| Fnu4HI | GCNGC | 5 cut(s) | 227, 290, 468, 670, 735 |
| FokI | GGATG | 4 cut(s) | 167, 272, 335, 434 |
| FriOI | GRGCYC | 1 cut(s) | 776 |
| Fsp4HI | GCNGC | 5 cut(s) | 227, 290, 468, 670, 735 |
| GlaI | GCGC | 1 cut(s) | 738 |
| GluI | GCNGC | 5 cut(s) | 227, 290, 468, 670, 735 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 296 |
| HaeIII | GGCC | 9 cut(s) | 11, 210, 269, 476, 542, 669, 690, 722, 812 |
| HapII | CCGG | 2 cut(s) | 385, 511 |
| HhaI | GCGC | 1 cut(s) | 739 |
| Hin1II | CATG | 4 cut(s) | 233, 365, 592, 766 |
| Hin6I | GCGC | 1 cut(s) | 737 |
| HinP1I | GCGC | 1 cut(s) | 737 |
| HincII | GTYRAC | 2 cut(s) | 297, 445 |
| HindII | GTYRAC | 2 cut(s) | 297, 445 |
| HindIII | AAGCTT | 1 cut(s) | 335 |
| HinfI | GANTC | 4 cut(s) | 65, 98, 314, 461 |
| HpaII | CCGG | 2 cut(s) | 385, 511 |
| HphI | GGTGA | 2 cut(s) | 34, 613 |
| Hpy166II | GTNNAC | 3 cut(s) | 79, 297, 445 |
| Hpy188I | TCNGA | 5 cut(s) | 93, 456, 481, 486, 793 |
| Hpy188III | TCNNGA | 3 cut(s) | 362, 749, 763 |
| Hpy8I | GTNNAC | 3 cut(s) | 79, 297, 445 |
| HpyAV | CCTTC | 4 cut(s) | 433, 451, 461, 701 |
| HpyCH4III | ACNGT | 3 cut(s) | 28, 163, 829 |
| HpyCH4IV | ACGT | 2 cut(s) | 640, 711 |
| HpyCH4V | TGCA | 1 cut(s) | 229 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 58, 232, 473, 554 |
| HpyF3I | CTNAG | 9 cut(s) | 39, 264, 338, 478, 501, 522, 537, 644, 770 |
| HpySE526I | ACGT | 2 cut(s) | 640, 711 |
| Hsp92II | CATG | 4 cut(s) | 233, 365, 592, 766 |
| HspAI | GCGC | 1 cut(s) | 737 |
| KspI | CCGCGG | 1 cut(s) | 331 |
| Kzo9I | GATC | 3 cut(s) | 481, 529, 699 |
| LmnI | GCTCC | 2 cut(s) | 286, 794 |
| Lsp1109I | GCAGC | 1 cut(s) | 213 |
| LweI | GCATC | 3 cut(s) | 250, 313, 607 |
| MaeII | ACGT | 2 cut(s) | 640, 711 |
| MaeIII | GTNAC | 3 cut(s) | 22, 343, 505 |
| MalI | GATC | 3 cut(s) | 483, 531, 701 |
| MbiI | CCGCTC | 2 cut(s) | 289, 367 |
| MboI | GATC | 3 cut(s) | 481, 529, 699 |
| MflI | RGATCY | 1 cut(s) | 481 |
| MhlI | GDGCHC | 1 cut(s) | 776 |
| MlsI | TGGCCA | 1 cut(s) | 812 |
| MluCI | AATT | 1 cut(s) | 110 |
| MluNI | TGGCCA | 1 cut(s) | 812 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MmeI | TCCRAC | 2 cut(s) | 474, 816 |
| MnlI | CCTC | 7 cut(s) | 22, 487, 490, 496, 547, 589, 679 |
| Mox20I | TGGCCA | 1 cut(s) | 812 |
| MscI | TGGCCA | 1 cut(s) | 812 |
| MseI | TTAA | 2 cut(s) | 381, 561 |
| Msp20I | TGGCCA | 1 cut(s) | 812 |
| MspA1I | CMGCKG | 2 cut(s) | 330, 697 |
| MspI | CCGG | 2 cut(s) | 385, 511 |
| MspR9I | CCNGG | 3 cut(s) | 242, 511, 809 |
| MvaI | CCWGG | 2 cut(s) | 242, 809 |
| MvnI | CGCG | 2 cut(s) | 83, 330 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 58, 232, 473, 554 |
| NciI | CCSGG | 1 cut(s) | 511 |
| NdeII | GATC | 3 cut(s) | 481, 529, 699 |
| NlaIII | CATG | 4 cut(s) | 233, 365, 592, 766 |
| NlaIV | GGNNCC | 2 cut(s) | 757, 790 |
| NmeAIII | GCCGAG | 1 cut(s) | 179 |
| NmuCI | GTSAC | 1 cut(s) | 22 |
| NspV | TTCGAA | 1 cut(s) | 101 |
| PaeR7I | CTCGAG | 1 cut(s) | 389 |
| PagI | TCATGA | 2 cut(s) | 361, 762 |
| PaqCI | CACCTGC | 2 cut(s) | 10, 409 |
| PceI | AGGCCT | 2 cut(s) | 11, 476 |
| PfeI | GAWTC | 3 cut(s) | 98, 314, 461 |
| PkrI | GCNGC | 5 cut(s) | 228, 291, 469, 671, 736 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| Psp6I | CCWGG | 2 cut(s) | 240, 807 |
| PspEI | GGTNACC | 2 cut(s) | 22, 505 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 2 cut(s) | 240, 807 |
| PspN4I | GGNNCC | 2 cut(s) | 757, 790 |
| PspPI | GGNCC | 3 cut(s) | 688, 720, 756 |
| PspXI | VCTCGAGB | 1 cut(s) | 389 |
| PsuI | RGATCY | 1 cut(s) | 481 |
| RsaI | GTAC | 2 cut(s) | 535, 586 |
| RsaNI | GTAC | 2 cut(s) | 534, 585 |
| SacII | CCGCGG | 1 cut(s) | 331 |
| SalI | GTCGAC | 1 cut(s) | 443 |
| SaqAI | TTAA | 2 cut(s) | 381, 561 |
| SatI | GCNGC | 5 cut(s) | 227, 290, 468, 670, 735 |
| Sau3AI | GATC | 3 cut(s) | 481, 529, 699 |
| Sau96I | GGNCC | 3 cut(s) | 688, 720, 756 |
| SchI | GAGTC | 1 cut(s) | 59 |
| ScrFI | CCNGG | 3 cut(s) | 242, 511, 809 |
| SduI | GDGCHC | 1 cut(s) | 776 |
| SfaNI | GCATC | 3 cut(s) | 250, 313, 607 |
| Sfr274I | CTCGAG | 1 cut(s) | 389 |
| Sfr303I | CCGCGG | 1 cut(s) | 331 |
| SfuI | TTCGAA | 1 cut(s) | 101 |
| SgrBI | CCGCGG | 1 cut(s) | 331 |
| SinI | GGWCC | 1 cut(s) | 756 |
| SlaI | CTCGAG | 1 cut(s) | 389 |
| SmlI | CTYRAG | 1 cut(s) | 389 |
| SmoI | CTYRAG | 1 cut(s) | 389 |
| Sse9I | AATT | 1 cut(s) | 110 |
| SseBI | AGGCCT | 2 cut(s) | 11, 476 |
| StuI | AGGCCT | 2 cut(s) | 11, 476 |
| StyD4I | CCNGG | 3 cut(s) | 240, 509, 807 |
| StyI | CCWWGG | 3 cut(s) | 300, 318, 471 |
| TaaI | ACNGT | 3 cut(s) | 28, 163, 829 |
| TaiI | ACGT | 2 cut(s) | 643, 714 |
| TaqI | TCGA | 3 cut(s) | 101, 390, 444 |
| TaqII | GACCGA | 1 cut(s) | 110 |
| TasI | AATT | 1 cut(s) | 110 |
| TauI | GCSGC | 4 cut(s) | 292, 470, 672, 737 |
| TfiI | GAWTC | 3 cut(s) | 98, 314, 461 |
| Tru1I | TTAA | 2 cut(s) | 381, 561 |
| Tru9I | TTAA | 2 cut(s) | 381, 561 |
| TscAI | CASTG | 3 cut(s) | 774, 784, 834 |
| TseFI | GTSAC | 1 cut(s) | 22 |
| TseI | GCWGC | 1 cut(s) | 226 |
| Tsp45I | GTSAC | 1 cut(s) | 22 |
| TspGWI | ACGGA | 1 cut(s) | 64 |
| TspRI | CASTG | 3 cut(s) | 774, 784, 834 |
| VpaK11BI | GGWCC | 1 cut(s) | 756 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 455 |
| XapI | RAATTY | 1 cut(s) | 110 |
| XhoI | CTCGAG | 1 cut(s) | 389 |
| XmiI | GTMKAC | 2 cut(s) | 78, 444 |