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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 212, 248, 353 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AclWI | GGATC | 1 cut(s) | 24 |
| AcoI | YGGCCR | 1 cut(s) | 141 |
| AcuI | CTGAAG | 2 cut(s) | 38, 144 |
| AfaI | GTAC | 2 cut(s) | 161, 319 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 12, 13, 58, 139, 258, 343 |
| AgsI | TTSAA | 2 cut(s) | 47, 350 |
| AjnI | CCWGG | 1 cut(s) | 337 |
| AluBI | AGCT | 1 cut(s) | 302 |
| AluI | AGCT | 1 cut(s) | 302 |
| AlwI | GGATC | 1 cut(s) | 24 |
| Ama87I | CYCGRG | 1 cut(s) | 361 |
| AoxI | GGCC | 3 cut(s) | 78, 141, 207 |
| ApeKI | GCWGC | 4 cut(s) | 26, 137, 235, 238 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 51 |
| AsuHPI | GGTGA | 1 cut(s) | 113 |
| AvaI | CYCGRG | 1 cut(s) | 361 |
| BanI | GGYRCC | 3 cut(s) | 212, 248, 353 |
| BanII | GRGCYC | 1 cut(s) | 134 |
| BbvI | GCAGC | 4 cut(s) | 13, 124, 222, 250 |
| BceAI | ACGGC | 2 cut(s) | 107, 134 |
| BciT130I | CCWGG | 1 cut(s) | 339 |
| BfaI | CTAG | 1 cut(s) | 418 |
| BfmI | CTRYAG | 1 cut(s) | 236 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BisI | GCNGC | 9 cut(s) | 27, 69, 138, 141, 144, 147, 236, 239, 287 |
| BlsI | GCNGC | 9 cut(s) | 28, 70, 139, 142, 145, 148, 237, 240, 288 |
| BmcAI | AGTACT | 1 cut(s) | 319 |
| Bme1390I | CCNGG | 1 cut(s) | 339 |
| BmeT110I | CYCGRG | 1 cut(s) | 361 |
| BmiI | GGNNCC | 5 cut(s) | 131, 214, 250, 355, 411 |
| BmrFI | CCNGG | 1 cut(s) | 339 |
| BmrI | ACTGGG | 1 cut(s) | 268 |
| BmsI | GCATC | 1 cut(s) | 264 |
| BmuI | ACTGGG | 1 cut(s) | 268 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 383, 415 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 3 cut(s) | 81, 216, 337 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 12, 13, 58, 139, 258, 343 |
| Bse118I | RCCGGY | 2 cut(s) | 209, 277 |
| Bse1I | ACTGG | 1 cut(s) | 263 |
| BseBI | CCWGG | 1 cut(s) | 339 |
| BseDI | CCNNGG | 3 cut(s) | 81, 216, 337 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 12, 13, 58, 139, 258, 343 |
| BseMII | CTCAG | 2 cut(s) | 107, 416 |
| BseNI | ACTGG | 1 cut(s) | 263 |
| BseX3I | CGGCCG | 1 cut(s) | 141 |
| BseXI | GCAGC | 4 cut(s) | 13, 124, 222, 250 |
| Bsh1285I | CGRYCG | 2 cut(s) | 144, 282 |
| BshFI | GGCC | 3 cut(s) | 80, 143, 209 |
| BshNI | GGYRCC | 3 cut(s) | 212, 248, 353 |
| BsiEI | CGRYCG | 2 cut(s) | 144, 282 |
| BsiHKCI | CYCGRG | 1 cut(s) | 361 |
| BsiSI | CCGG | 2 cut(s) | 210, 278 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 12, 13, 58, 139, 258, 343 |
| BsnI | GGCC | 3 cut(s) | 80, 143, 209 |
| BsoBI | CYCGRG | 1 cut(s) | 361 |
| Bsp1286I | GDGCHC | 1 cut(s) | 134 |
| Bsp1407I | TGTACA | 1 cut(s) | 159 |
| Bsp143I | GATC | 1 cut(s) | 16 |
| Bsp19I | CCATGG | 1 cut(s) | 216 |
| BspANI | GGCC | 3 cut(s) | 80, 143, 209 |
| BspCNI | CTCAG | 2 cut(s) | 108, 415 |
| BspLI | GGNNCC | 5 cut(s) | 131, 214, 250, 355, 411 |
| BspMAI | CTGCAG | 1 cut(s) | 240 |
| BspPI | GGATC | 1 cut(s) | 24 |
| BspT107I | GGYRCC | 3 cut(s) | 212, 248, 353 |
| BsrFI | RCCGGY | 2 cut(s) | 209, 277 |
| BsrGI | TGTACA | 1 cut(s) | 159 |
| BsrI | ACTGG | 1 cut(s) | 263 |
| BssAI | RCCGGY | 2 cut(s) | 209, 277 |
| BssECI | CCNNGG | 3 cut(s) | 81, 216, 337 |
| BssMI | GATC | 1 cut(s) | 16 |
| BssT1I | CCWWGG | 1 cut(s) | 216 |
| Bst2UI | CCWGG | 1 cut(s) | 339 |
| BstAUI | TGTACA | 1 cut(s) | 159 |
| BstC8I | GCNNGC | 4 cut(s) | 112, 291, 358, 408 |
| BstDEI | CTNAG | 2 cut(s) | 116, 402 |
| BstDSI | CCRYGG | 1 cut(s) | 216 |
| BstKTI | GATC | 1 cut(s) | 19 |
| BstMBI | GATC | 1 cut(s) | 16 |
| BstMCI | CGRYCG | 2 cut(s) | 144, 282 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 77, 143, 146, 283, 299 |
| BstNI | CCWGG | 1 cut(s) | 339 |
| BstSCI | CCNGG | 1 cut(s) | 337 |
| BstSFI | CTRYAG | 1 cut(s) | 236 |
| BstV1I | GCAGC | 4 cut(s) | 13, 124, 222, 250 |
| BstZI | CGGCCG | 1 cut(s) | 141 |
| BsuRI | GGCC | 3 cut(s) | 80, 143, 209 |
| BtgI | CCRYGG | 1 cut(s) | 216 |
| Cac8I | GCNNGC | 4 cut(s) | 112, 291, 358, 408 |
| CciNI | GCGGCCGC | 1 cut(s) | 141 |
| Cfr10I | RCCGGY | 2 cut(s) | 209, 277 |
| Csp6I | GTAC | 2 cut(s) | 160, 318 |
| CviAII | CATG | 1 cut(s) | 217 |
| CviJI | RGCY | 8 cut(s) | 80, 94, 132, 143, 209, 221, 302, 410 |
| CviKI_1 | RGCY | 8 cut(s) | 80, 94, 132, 143, 209, 221, 302, 410 |
| CviQI | GTAC | 2 cut(s) | 160, 318 |
| DdeI | CTNAG | 2 cut(s) | 116, 402 |
| DpnI | GATC | 1 cut(s) | 18 |
| DpnII | GATC | 1 cut(s) | 16 |
| EaeI | YGGCCR | 1 cut(s) | 141 |
| EagI | CGGCCG | 1 cut(s) | 141 |
| EciI | GGCGGA | 2 cut(s) | 294, 396 |
| EclXI | CGGCCG | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 1 cut(s) | 216 |
| Eco24I | GRGCYC | 1 cut(s) | 134 |
| Eco52I | CGGCCG | 1 cut(s) | 141 |
| Eco57I | CTGAAG | 2 cut(s) | 38, 144 |
| Eco88I | CYCGRG | 1 cut(s) | 361 |
| EcoRII | CCWGG | 1 cut(s) | 337 |
| EcoT14I | CCWWGG | 1 cut(s) | 216 |
| EcoT38I | GRGCYC | 1 cut(s) | 134 |
| ErhI | CCWWGG | 1 cut(s) | 216 |
| FaeI | CATG | 1 cut(s) | 220 |
| FaiI | YATR | 1 cut(s) | 218 |
| FatI | CATG | 1 cut(s) | 216 |
| FauI | CCCGC | 4 cut(s) | 6, 51, 119, 142 |
| Fnu4HI | GCNGC | 9 cut(s) | 27, 69, 138, 141, 144, 147, 236, 239, 287 |
| FriOI | GRGCYC | 1 cut(s) | 134 |
| Fsp4HI | GCNGC | 9 cut(s) | 27, 69, 138, 141, 144, 147, 236, 239, 287 |
| FspBI | CTAG | 1 cut(s) | 418 |
| GluI | GCNGC | 9 cut(s) | 27, 69, 138, 141, 144, 147, 236, 239, 287 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeIII | GGCC | 3 cut(s) | 80, 143, 209 |
| HapII | CCGG | 2 cut(s) | 210, 278 |
| Hin1II | CATG | 1 cut(s) | 220 |
| HinfI | GANTC | 3 cut(s) | 62, 384, 398 |
| HpaII | CCGG | 2 cut(s) | 210, 278 |
| HphI | GGTGA | 1 cut(s) | 113 |
| Hpy188I | TCNGA | 1 cut(s) | 391 |
| Hpy99I | CGWCG | 1 cut(s) | 274 |
| HpyAV | CCTTC | 8 cut(s) | 34, 62, 119, 178, 199, 238, 259, 344 |
| HpyCH4V | TGCA | 1 cut(s) | 238 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 77, 143, 146, 283, 299 |
| HpyF3I | CTNAG | 2 cut(s) | 116, 402 |
| Hsp92II | CATG | 1 cut(s) | 220 |
| Kzo9I | GATC | 1 cut(s) | 16 |
| LmnI | GCTCC | 3 cut(s) | 129, 307, 415 |
| Lsp1109I | GCAGC | 4 cut(s) | 13, 124, 222, 250 |
| LweI | GCATC | 1 cut(s) | 264 |
| MaeI | CTAG | 1 cut(s) | 418 |
| MalI | GATC | 1 cut(s) | 18 |
| MboI | GATC | 1 cut(s) | 16 |
| MboII | GAAGA | 1 cut(s) | 307 |
| MhlI | GDGCHC | 1 cut(s) | 134 |
| MlyI | GAGTC | 3 cut(s) | 71, 378, 392 |
| MnlI | CCTC | 3 cut(s) | 76, 91, 385 |
| MroXI | GAANNNNTTC | 1 cut(s) | 51 |
| MseI | TTAA | 1 cut(s) | 87 |
| MspA1I | CMGCKG | 2 cut(s) | 58, 137 |
| MspI | CCGG | 2 cut(s) | 210, 278 |
| MspR9I | CCNGG | 1 cut(s) | 339 |
| MvaI | CCWGG | 1 cut(s) | 339 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 77, 143, 146, 283, 299 |
| NcoI | CCATGG | 1 cut(s) | 216 |
| NdeII | GATC | 1 cut(s) | 16 |
| NlaIII | CATG | 1 cut(s) | 220 |
| NlaIV | GGNNCC | 5 cut(s) | 131, 214, 250, 355, 411 |
| NmeAIII | GCCGAG | 1 cut(s) | 106 |
| NotI | GCGGCCGC | 1 cut(s) | 141 |
| PdmI | GAANNNNTTC | 1 cut(s) | 51 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PkrI | GCNGC | 9 cut(s) | 28, 70, 139, 142, 145, 148, 237, 240, 288 |
| PleI | GAGTC | 3 cut(s) | 70, 378, 392 |
| PpsI | GAGTC | 3 cut(s) | 70, 378, 392 |
| Psp6I | CCWGG | 1 cut(s) | 337 |
| PspGI | CCWGG | 1 cut(s) | 337 |
| PspN4I | GGNNCC | 5 cut(s) | 131, 214, 250, 355, 411 |
| PstI | CTGCAG | 1 cut(s) | 240 |
| RsaI | GTAC | 2 cut(s) | 161, 319 |
| RsaNI | GTAC | 2 cut(s) | 160, 318 |
| SaqAI | TTAA | 1 cut(s) | 87 |
| SatI | GCNGC | 9 cut(s) | 27, 69, 138, 141, 144, 147, 236, 239, 287 |
| Sau3AI | GATC | 1 cut(s) | 16 |
| ScaI | AGTACT | 1 cut(s) | 319 |
| SchI | GAGTC | 3 cut(s) | 71, 378, 392 |
| ScrFI | CCNGG | 1 cut(s) | 339 |
| SduI | GDGCHC | 1 cut(s) | 134 |
| SetI | ASST | 6 cut(s) | 45, 87, 304, 348, 355, 419 |
| SfaNI | GCATC | 1 cut(s) | 264 |
| SfcI | CTRYAG | 1 cut(s) | 236 |
| SspMI | CTAG | 1 cut(s) | 418 |
| StyD4I | CCNGG | 1 cut(s) | 337 |
| StyI | CCWWGG | 1 cut(s) | 216 |
| TatI | WGTACW | 2 cut(s) | 159, 317 |
| TauI | GCSGC | 5 cut(s) | 71, 143, 146, 149, 289 |
| Tru1I | TTAA | 1 cut(s) | 87 |
| Tru9I | TTAA | 1 cut(s) | 87 |
| TseI | GCWGC | 4 cut(s) | 26, 137, 235, 238 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 223 |
| XmnI | GAANNNNTTC | 1 cut(s) | 51 |
| XspI | CTAG | 1 cut(s) | 418 |
| ZrmI | AGTACT | 1 cut(s) | 319 |