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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 4 cut(s) | 16, 256, 322, 385 |
| AccII | CGCG | 2 cut(s) | 76, 297 |
| AcoI | YGGCCR | 3 cut(s) | 264, 312, 507 |
| AcuI | CTGAAG | 2 cut(s) | 88, 510 |
| AcyI | GRCGYC | 1 cut(s) | 158 |
| AfaI | GTAC | 1 cut(s) | 499 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 321, 379, 483, 484 |
| AflIII | ACRYGT | 1 cut(s) | 144 |
| AgsI | TTSAA | 2 cut(s) | 521, 529 |
| AluBI | AGCT | 3 cut(s) | 108, 187, 304 |
| AluI | AGCT | 3 cut(s) | 108, 187, 304 |
| Alw21I | GWGCWC | 1 cut(s) | 189 |
| Alw26I | GTCTC | 3 cut(s) | 212, 232, 352 |
| AoxI | GGCC | 4 cut(s) | 58, 264, 312, 507 |
| ApeKI | GCWGC | 5 cut(s) | 166, 259, 376, 421, 503 |
| AspLEI | GCGC | 2 cut(s) | 78, 556 |
| AsuHPI | GGTGA | 3 cut(s) | 23, 463, 479 |
| AxyI | CCTNAGG | 1 cut(s) | 482 |
| BalI | TGGCCA | 2 cut(s) | 266, 314 |
| BanII | GRGCYC | 1 cut(s) | 189 |
| Bbv12I | GWGCWC | 1 cut(s) | 189 |
| BbvI | GCAGC | 5 cut(s) | 178, 246, 363, 433, 490 |
| BccI | CCATC | 3 cut(s) | 2, 39, 323 |
| BceAI | ACGGC | 2 cut(s) | 59, 99 |
| BcoDI | GTCTC | 3 cut(s) | 212, 232, 352 |
| BfaI | CTAG | 3 cut(s) | 47, 62, 438 |
| BfmI | CTRYAG | 1 cut(s) | 377 |
| BfoI | RGCGCY | 1 cut(s) | 557 |
| BpmI | CTGGAG | 2 cut(s) | 194, 482 |
| Bpu10I | CCTNAGC | 1 cut(s) | 188 |
| BsaHI | GRCGYC | 1 cut(s) | 158 |
| BsaI | GGTCTC | 1 cut(s) | 212 |
| BsaJI | CCNNGG | 6 cut(s) | 81, 171, 202, 267, 295, 396 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 321, 379, 483, 484 |
| Bse1I | ACTGG | 1 cut(s) | 246 |
| Bse21I | CCTNAGG | 1 cut(s) | 482 |
| BseDI | CCNNGG | 6 cut(s) | 81, 171, 202, 267, 295, 396 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 321, 379, 483, 484 |
| BseMII | CTCAG | 3 cut(s) | 202, 438, 473 |
| BseNI | ACTGG | 1 cut(s) | 246 |
| BseX3I | CGGCCG | 1 cut(s) | 507 |
| BseXI | GCAGC | 5 cut(s) | 178, 246, 363, 433, 490 |
| BsgI | GTGCAG | 2 cut(s) | 122, 440 |
| Bsh1236I | CGCG | 2 cut(s) | 76, 297 |
| Bsh1285I | CGRYCG | 1 cut(s) | 510 |
| BshFI | GGCC | 4 cut(s) | 60, 266, 314, 509 |
| BsiEI | CGRYCG | 1 cut(s) | 510 |
| BsiHKAI | GWGCWC | 1 cut(s) | 189 |
| BslFI | GGGAC | 2 cut(s) | 147, 338 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 321, 379, 483, 484 |
| BsmAI | GTCTC | 3 cut(s) | 212, 232, 352 |
| BsmFI | GGGAC | 2 cut(s) | 147, 338 |
| BsmI | GAATGC | 1 cut(s) | 524 |
| BsnI | GGCC | 4 cut(s) | 60, 266, 314, 509 |
| Bso31I | GGTCTC | 1 cut(s) | 212 |
| Bsp1286I | GDGCHC | 1 cut(s) | 189 |
| BspANI | GGCC | 4 cut(s) | 60, 266, 314, 509 |
| BspCNI | CTCAG | 3 cut(s) | 201, 439, 474 |
| BspFNI | CGCG | 2 cut(s) | 76, 297 |
| BspMAI | CTGCAG | 1 cut(s) | 381 |
| BspTNI | GGTCTC | 1 cut(s) | 212 |
| BsrBI | CCGCTC | 4 cut(s) | 16, 256, 322, 385 |
| BsrI | ACTGG | 1 cut(s) | 246 |
| BssECI | CCNNGG | 6 cut(s) | 81, 171, 202, 267, 295, 396 |
| BssNI | GRCGYC | 1 cut(s) | 158 |
| BssT1I | CCWWGG | 4 cut(s) | 171, 202, 267, 396 |
| Bst6I | CTCTTC | 1 cut(s) | 32 |
| BstACI | GRCGYC | 1 cut(s) | 158 |
| BstC8I | GCNNGC | 1 cut(s) | 264 |
| BstDEI | CTNAG | 3 cut(s) | 188, 447, 482 |
| BstDSI | CCRYGG | 2 cut(s) | 81, 295 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 377 |
| BstFNI | CGCG | 2 cut(s) | 76, 297 |
| BstH2I | RGCGCY | 1 cut(s) | 557 |
| BstHHI | GCGC | 2 cut(s) | 78, 556 |
| BstMAI | GTCTC | 3 cut(s) | 212, 232, 352 |
| BstMCI | CGRYCG | 1 cut(s) | 510 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 382, 509 |
| BstNSI | RCATGY | 1 cut(s) | 148 |
| BstSFI | CTRYAG | 1 cut(s) | 377 |
| BstUI | CGCG | 2 cut(s) | 76, 297 |
| BstV1I | GCAGC | 5 cut(s) | 178, 246, 363, 433, 490 |
| BstZI | CGGCCG | 1 cut(s) | 507 |
| Bsu36I | CCTNAGG | 1 cut(s) | 482 |
| BsuRI | GGCC | 4 cut(s) | 60, 266, 314, 509 |
| BtgI | CCRYGG | 2 cut(s) | 81, 295 |
| BtgZI | GCGATG | 1 cut(s) | 352 |
| Cac8I | GCNNGC | 1 cut(s) | 264 |
| CciNI | GCGGCCGC | 1 cut(s) | 507 |
| CfoI | GCGC | 2 cut(s) | 78, 556 |
| Cfr42I | CCGCGG | 1 cut(s) | 298 |
| CseI | GACGC | 1 cut(s) | 147 |
| Csp6I | GTAC | 1 cut(s) | 498 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 70, 105 |
| CviAII | CATG | 1 cut(s) | 145 |
| CviQI | GTAC | 1 cut(s) | 498 |
| DdeI | CTNAG | 3 cut(s) | 188, 447, 482 |
| EaeI | YGGCCR | 3 cut(s) | 264, 312, 507 |
| EagI | CGGCCG | 1 cut(s) | 507 |
| Eam1104I | CTCTTC | 1 cut(s) | 32 |
| EarI | CTCTTC | 1 cut(s) | 32 |
| EciI | GGCGGA | 5 cut(s) | 239, 260, 287, 421, 554 |
| Ecl136II | GAGCTC | 1 cut(s) | 187 |
| EclXI | CGGCCG | 1 cut(s) | 507 |
| Eco130I | CCWWGG | 4 cut(s) | 171, 202, 267, 396 |
| Eco24I | GRGCYC | 1 cut(s) | 189 |
| Eco31I | GGTCTC | 1 cut(s) | 212 |
| Eco52I | CGGCCG | 1 cut(s) | 507 |
| Eco53kI | GAGCTC | 1 cut(s) | 187 |
| Eco57I | CTGAAG | 2 cut(s) | 88, 510 |
| Eco81I | CCTNAGG | 1 cut(s) | 482 |
| EcoICRI | GAGCTC | 1 cut(s) | 187 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 377 |
| EcoT14I | CCWWGG | 4 cut(s) | 171, 202, 267, 396 |
| EcoT38I | GRGCYC | 1 cut(s) | 189 |
| ErhI | CCWWGG | 4 cut(s) | 171, 202, 267, 396 |
| FaeI | CATG | 1 cut(s) | 148 |
| FaiI | YATR | 3 cut(s) | 37, 146, 285 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 155, 187 |
| FaqI | GGGAC | 2 cut(s) | 147, 338 |
| FatI | CATG | 1 cut(s) | 144 |
| FauI | CCCGC | 6 cut(s) | 9, 58, 124, 315, 417, 485 |
| FriOI | GRGCYC | 1 cut(s) | 189 |
| FspBI | CTAG | 3 cut(s) | 47, 62, 438 |
| GlaI | GCGC | 2 cut(s) | 77, 555 |
| GsuI | CTGGAG | 2 cut(s) | 194, 482 |
| HaeII | RGCGCY | 1 cut(s) | 557 |
| HaeIII | GGCC | 4 cut(s) | 60, 266, 314, 509 |
| HgaI | GACGC | 1 cut(s) | 147 |
| HhaI | GCGC | 2 cut(s) | 78, 556 |
| Hin1I | GRCGYC | 1 cut(s) | 158 |
| Hin1II | CATG | 1 cut(s) | 148 |
| Hin6I | GCGC | 2 cut(s) | 76, 554 |
| HinP1I | GCGC | 2 cut(s) | 76, 554 |
| HincII | GTYRAC | 1 cut(s) | 280 |
| HindII | GTYRAC | 1 cut(s) | 280 |
| HinfI | GANTC | 3 cut(s) | 345, 428, 563 |
| HphI | GGTGA | 3 cut(s) | 23, 463, 479 |
| Hpy166II | GTNNAC | 1 cut(s) | 280 |
| Hpy188III | TCNNGA | 2 cut(s) | 178, 211 |
| Hpy8I | GTNNAC | 1 cut(s) | 280 |
| HpyAV | CCTTC | 3 cut(s) | 112, 485, 544 |
| HpyCH4IV | ACGT | 1 cut(s) | 309 |
| HpyCH4V | TGCA | 3 cut(s) | 139, 379, 421 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 382, 509 |
| HpyF3I | CTNAG | 3 cut(s) | 188, 447, 482 |
| HpySE526I | ACGT | 1 cut(s) | 309 |
| Hsp92I | GRCGYC | 1 cut(s) | 158 |
| Hsp92II | CATG | 1 cut(s) | 148 |
| HspAI | GCGC | 2 cut(s) | 76, 554 |
| KspI | CCGCGG | 1 cut(s) | 298 |
| LmnI | GCTCC | 3 cut(s) | 184, 358, 382 |
| LpnPI | CCDG | 9 cut(s) | 175, 224, 227, 248, 347, 365, 386, 446, 494 |
| Lsp1109I | GCAGC | 5 cut(s) | 178, 246, 363, 433, 490 |
| MaeI | CTAG | 3 cut(s) | 47, 62, 438 |
| MaeII | ACGT | 1 cut(s) | 309 |
| MaeIII | GTNAC | 1 cut(s) | 472 |
| MbiI | CCGCTC | 4 cut(s) | 16, 256, 322, 385 |
| MboII | GAAGA | 1 cut(s) | 19 |
| MfeI | CAATTG | 1 cut(s) | 87 |
| MhlI | GDGCHC | 1 cut(s) | 189 |
| MlsI | TGGCCA | 2 cut(s) | 266, 314 |
| MluCI | AATT | 1 cut(s) | 87 |
| MluNI | TGGCCA | 2 cut(s) | 266, 314 |
| MlyI | GAGTC | 3 cut(s) | 354, 437, 572 |
| MmeI | TCCRAC | 1 cut(s) | 336 |
| Mox20I | TGGCCA | 2 cut(s) | 266, 314 |
| MscI | TGGCCA | 2 cut(s) | 266, 314 |
| MseI | TTAA | 1 cut(s) | 546 |
| MslI | CAYNNNNRTG | 2 cut(s) | 149, 416 |
| Msp20I | TGGCCA | 2 cut(s) | 266, 314 |
| MspA1I | CMGCKG | 3 cut(s) | 297, 424, 503 |
| MunI | CAATTG | 1 cut(s) | 87 |
| Mva1269I | GAATGC | 1 cut(s) | 524 |
| MvnI | CGCG | 2 cut(s) | 76, 297 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 382, 509 |
| NlaIII | CATG | 1 cut(s) | 148 |
| NmeAIII | GCCGAG | 1 cut(s) | 89 |
| NotI | GCGGCCGC | 1 cut(s) | 507 |
| NspI | RCATGY | 1 cut(s) | 148 |
| PciI | ACATGT | 1 cut(s) | 144 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 147, 315 |
| PctI | GAATGC | 1 cut(s) | 524 |
| PflFI | GACNNNGTC | 1 cut(s) | 562 |
| PleI | GAGTC | 3 cut(s) | 353, 436, 571 |
| PpsI | GAGTC | 3 cut(s) | 353, 436, 571 |
| PscI | ACATGT | 1 cut(s) | 144 |
| Psp124BI | GAGCTC | 1 cut(s) | 189 |
| PstI | CTGCAG | 1 cut(s) | 381 |
| PsyI | GACNNNGTC | 1 cut(s) | 562 |
| RsaI | GTAC | 1 cut(s) | 499 |
| RsaNI | GTAC | 1 cut(s) | 498 |
| RseI | CAYNNNNRTG | 2 cut(s) | 149, 416 |
| SacI | GAGCTC | 1 cut(s) | 189 |
| SacII | CCGCGG | 1 cut(s) | 298 |
| SaqAI | TTAA | 1 cut(s) | 546 |
| SchI | GAGTC | 3 cut(s) | 354, 437, 572 |
| SduI | GDGCHC | 1 cut(s) | 189 |
| SetI | ASST | 7 cut(s) | 110, 189, 208, 252, 306, 312, 453 |
| SfcI | CTRYAG | 1 cut(s) | 377 |
| Sfr303I | CCGCGG | 1 cut(s) | 298 |
| SgrBI | CCGCGG | 1 cut(s) | 298 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 149, 416 |
| Sse9I | AATT | 1 cut(s) | 87 |
| SspMI | CTAG | 3 cut(s) | 47, 62, 438 |
| SstI | GAGCTC | 1 cut(s) | 189 |
| StyI | CCWWGG | 4 cut(s) | 171, 202, 267, 396 |
| TaiI | ACGT | 1 cut(s) | 312 |
| TaqI | TCGA | 2 cut(s) | 177, 318 |
| TasI | AATT | 1 cut(s) | 87 |
| TauI | GCSGC | 8 cut(s) | 60, 158, 259, 395, 437, 460, 509, 512 |
| Tru1I | TTAA | 1 cut(s) | 546 |
| Tru9I | TTAA | 1 cut(s) | 546 |
| TseI | GCWGC | 5 cut(s) | 166, 259, 376, 421, 503 |
| TspDTI | ATGAA | 1 cut(s) | 354 |
| Tth111I | GACNNNGTC | 1 cut(s) | 562 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 377 |
| XceI | RCATGY | 1 cut(s) | 148 |
| XspI | CTAG | 3 cut(s) | 47, 62, 438 |