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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 365 |
| AccB1I | GGYRCC | 2 cut(s) | 190, 276 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 200 |
| AciI | CCGC | 6 cut(s) | 12, 64, 86, 267, 406, 452 |
| AcoI | YGGCCR | 2 cut(s) | 328, 410 |
| AcyI | GRCGYC | 2 cut(s) | 191, 211 |
| AfaI | GTAC | 1 cut(s) | 324 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 60, 200, 266, 291, 415 |
| AgsI | TTSAA | 1 cut(s) | 105 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 429 |
| AjnI | CCWGG | 2 cut(s) | 23, 298 |
| AluBI | AGCT | 3 cut(s) | 57, 174, 356 |
| AluI | AGCT | 3 cut(s) | 57, 174, 356 |
| Alw26I | GTCTC | 1 cut(s) | 300 |
| AoxI | GGCC | 7 cut(s) | 83, 116, 149, 216, 302, 328, 410 |
| ApeKI | GCWGC | 1 cut(s) | 49 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 419, 451 |
| AspLEI | GCGC | 2 cut(s) | 193, 366 |
| AspS9I | GGNCC | 2 cut(s) | 302, 338 |
| AsuHPI | GGTGA | 2 cut(s) | 430, 454 |
| AvaII | GGWCC | 1 cut(s) | 338 |
| BaeGI | GKGCMC | 1 cut(s) | 397 |
| BanI | GGYRCC | 2 cut(s) | 190, 276 |
| BbvCI | CCTCAGC | 1 cut(s) | 80 |
| BbvI | GCAGC | 1 cut(s) | 36 |
| BccI | CCATC | 2 cut(s) | 129, 349 |
| BceAI | ACGGC | 1 cut(s) | 343 |
| BciT130I | CCWGG | 2 cut(s) | 25, 300 |
| BciVI | GTATCC | 1 cut(s) | 90 |
| BcoDI | GTCTC | 1 cut(s) | 300 |
| BfaI | CTAG | 2 cut(s) | 220, 353 |
| BfoI | RGCGCY | 1 cut(s) | 194 |
| BfuI | GTATCC | 1 cut(s) | 90 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 224 |
| BisI | GCNGC | 3 cut(s) | 12, 50, 86 |
| BlsI | GCNGC | 3 cut(s) | 13, 51, 87 |
| Bme1390I | CCNGG | 2 cut(s) | 25, 300 |
| Bme18I | GGWCC | 1 cut(s) | 338 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 429 |
| BmgT120I | GGNCC | 2 cut(s) | 302, 338 |
| BmiI | GGNNCC | 4 cut(s) | 192, 278, 339, 372 |
| BmrFI | CCNGG | 2 cut(s) | 25, 300 |
| BmrI | ACTGGG | 1 cut(s) | 279 |
| BmsI | GCATC | 1 cut(s) | 129 |
| BmuI | ACTGGG | 1 cut(s) | 279 |
| BpmI | CTGGAG | 2 cut(s) | 79, 282 |
| Bpu10I | CCTNAGC | 1 cut(s) | 80 |
| BsaHI | GRCGYC | 2 cut(s) | 191, 211 |
| BsaI | GGTCTC | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 3 cut(s) | 290, 299, 413 |
| BsaWI | WCCGGW | 1 cut(s) | 273 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 60, 200, 266, 291, 415 |
| Bse118I | RCCGGY | 3 cut(s) | 151, 223, 408 |
| Bse1I | ACTGG | 1 cut(s) | 285 |
| BseBI | CCWGG | 2 cut(s) | 25, 300 |
| BseDI | CCNNGG | 3 cut(s) | 290, 299, 413 |
| BseGI | GGATG | 1 cut(s) | 144 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 60, 200, 266, 291, 415 |
| BseMII | CTCAG | 1 cut(s) | 71 |
| BseNI | ACTGG | 1 cut(s) | 285 |
| BseRI | GAGGAG | 1 cut(s) | 84 |
| BseSI | GKGCMC | 1 cut(s) | 397 |
| BseX3I | CGGCCG | 2 cut(s) | 328, 410 |
| BseXI | GCAGC | 1 cut(s) | 36 |
| BseYI | CCCAGC | 2 cut(s) | 53, 263 |
| Bsh1285I | CGRYCG | 2 cut(s) | 331, 413 |
| BshFI | GGCC | 7 cut(s) | 85, 118, 151, 218, 304, 330, 412 |
| BshNI | GGYRCC | 2 cut(s) | 190, 276 |
| BsiEI | CGRYCG | 2 cut(s) | 331, 413 |
| BsiSI | CCGG | 6 cut(s) | 152, 215, 224, 274, 331, 409 |
| BslFI | GGGAC | 1 cut(s) | 351 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 60, 200, 266, 291, 415 |
| BsmAI | GTCTC | 1 cut(s) | 300 |
| BsmFI | GGGAC | 1 cut(s) | 351 |
| BsnI | GGCC | 7 cut(s) | 85, 118, 151, 218, 304, 330, 412 |
| Bso31I | GGTCTC | 1 cut(s) | 300 |
| Bsp1286I | GDGCHC | 1 cut(s) | 397 |
| Bsp143I | GATC | 1 cut(s) | 318 |
| BspACI | CCGC | 6 cut(s) | 12, 64, 86, 267, 406, 452 |
| BspANI | GGCC | 7 cut(s) | 85, 118, 151, 218, 304, 330, 412 |
| BspCNI | CTCAG | 1 cut(s) | 72 |
| BspHI | TCATGA | 1 cut(s) | 344 |
| BspLI | GGNNCC | 4 cut(s) | 192, 278, 339, 372 |
| BspT107I | GGYRCC | 2 cut(s) | 190, 276 |
| BspTNI | GGTCTC | 1 cut(s) | 300 |
| BsrFI | RCCGGY | 3 cut(s) | 151, 223, 408 |
| BsrI | ACTGG | 1 cut(s) | 285 |
| BssAI | RCCGGY | 3 cut(s) | 151, 223, 408 |
| BssECI | CCNNGG | 3 cut(s) | 290, 299, 413 |
| BssMI | GATC | 1 cut(s) | 318 |
| BssNI | GRCGYC | 2 cut(s) | 191, 211 |
| Bst2UI | CCWGG | 2 cut(s) | 25, 300 |
| Bst4CI | ACNGT | 2 cut(s) | 93, 431 |
| BstACI | GRCGYC | 2 cut(s) | 191, 211 |
| BstC8I | GCNNGC | 2 cut(s) | 225, 410 |
| BstDEI | CTNAG | 1 cut(s) | 80 |
| BstF5I | GGATG | 1 cut(s) | 144 |
| BstH2I | RGCGCY | 1 cut(s) | 194 |
| BstHHI | GCGC | 2 cut(s) | 193, 366 |
| BstKTI | GATC | 1 cut(s) | 321 |
| BstMAI | GTCTC | 1 cut(s) | 300 |
| BstMBI | GATC | 1 cut(s) | 318 |
| BstMCI | CGRYCG | 2 cut(s) | 331, 413 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 20, 85, 148, 224 |
| BstNI | CCWGG | 2 cut(s) | 25, 300 |
| BstSCI | CCNGG | 2 cut(s) | 23, 298 |
| BstSLI | GKGCMC | 1 cut(s) | 397 |
| BstV1I | GCAGC | 1 cut(s) | 36 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 312 |
| BstZI | CGGCCG | 2 cut(s) | 328, 410 |
| BsuI | GTATCC | 1 cut(s) | 90 |
| BsuRI | GGCC | 7 cut(s) | 85, 118, 151, 218, 304, 330, 412 |
| BtsCI | GGATG | 1 cut(s) | 144 |
| BtsI | GCAGTG | 2 cut(s) | 81, 234 |
| BtsIMutI | CAGTG | 3 cut(s) | 81, 89, 234 |
| Cac8I | GCNNGC | 2 cut(s) | 225, 410 |
| CciI | TCATGA | 1 cut(s) | 344 |
| CfoI | GCGC | 2 cut(s) | 193, 366 |
| Cfr10I | RCCGGY | 3 cut(s) | 151, 223, 408 |
| Cfr13I | GGNCC | 2 cut(s) | 302, 338 |
| CseI | GACGC | 1 cut(s) | 200 |
| Csp6I | GTAC | 1 cut(s) | 323 |
| CviAII | CATG | 2 cut(s) | 345, 367 |
| CviQI | GTAC | 1 cut(s) | 323 |
| DdeI | CTNAG | 1 cut(s) | 80 |
| DinI | GGCGCC | 1 cut(s) | 192 |
| DpnI | GATC | 1 cut(s) | 320 |
| DpnII | GATC | 1 cut(s) | 318 |
| DriI | GACNNNNNGTC | 1 cut(s) | 429 |
| EaeI | YGGCCR | 2 cut(s) | 328, 410 |
| EagI | CGGCCG | 2 cut(s) | 328, 410 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 429 |
| EciI | GGCGGA | 1 cut(s) | 79 |
| EclXI | CGGCCG | 2 cut(s) | 328, 410 |
| Eco31I | GGTCTC | 1 cut(s) | 300 |
| Eco47I | GGWCC | 1 cut(s) | 338 |
| Eco52I | CGGCCG | 2 cut(s) | 328, 410 |
| EcoRII | CCWGG | 2 cut(s) | 23, 298 |
| EgeI | GGCGCC | 1 cut(s) | 192 |
| EheI | GGCGCC | 1 cut(s) | 192 |
| FaeI | CATG | 2 cut(s) | 348, 370 |
| FaiI | YATR | 5 cut(s) | 122, 313, 346, 368, 391 |
| FaqI | GGGAC | 1 cut(s) | 351 |
| FatI | CATG | 2 cut(s) | 344, 366 |
| Fnu4HI | GCNGC | 3 cut(s) | 12, 50, 86 |
| FokI | GGATG | 1 cut(s) | 151 |
| Fsp4HI | GCNGC | 3 cut(s) | 12, 50, 86 |
| FspBI | CTAG | 2 cut(s) | 220, 353 |
| FspI | TGCGCA | 1 cut(s) | 365 |
| GlaI | GCGC | 2 cut(s) | 192, 365 |
| GluI | GCNGC | 3 cut(s) | 12, 50, 86 |
| GsaI | CCCAGC | 2 cut(s) | 57, 267 |
| GsuI | CTGGAG | 2 cut(s) | 79, 282 |
| HaeII | RGCGCY | 1 cut(s) | 194 |
| HaeIII | GGCC | 7 cut(s) | 85, 118, 151, 218, 304, 330, 412 |
| HapII | CCGG | 6 cut(s) | 152, 215, 224, 274, 331, 409 |
| HgaI | GACGC | 1 cut(s) | 200 |
| HhaI | GCGC | 2 cut(s) | 193, 366 |
| Hin1I | GRCGYC | 2 cut(s) | 191, 211 |
| Hin1II | CATG | 2 cut(s) | 348, 370 |
| Hin6I | GCGC | 2 cut(s) | 191, 364 |
| HinP1I | GCGC | 2 cut(s) | 191, 364 |
| HinfI | GANTC | 3 cut(s) | 5, 270, 462 |
| HpaII | CCGG | 6 cut(s) | 152, 215, 224, 274, 331, 409 |
| HphI | GGTGA | 2 cut(s) | 430, 454 |
| Hpy166II | GTNNAC | 1 cut(s) | 325 |
| Hpy188I | TCNGA | 2 cut(s) | 291, 375 |
| Hpy188III | TCNNGA | 1 cut(s) | 345 |
| Hpy8I | GTNNAC | 1 cut(s) | 325 |
| Hpy99I | CGWCG | 2 cut(s) | 147, 255 |
| HpyAV | CCTTC | 3 cut(s) | 111, 141, 201 |
| HpyCH4III | ACNGT | 2 cut(s) | 93, 431 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 20, 85, 148, 224 |
| HpyF3I | CTNAG | 1 cut(s) | 80 |
| Hsp92I | GRCGYC | 2 cut(s) | 191, 211 |
| Hsp92II | CATG | 2 cut(s) | 348, 370 |
| HspAI | GCGC | 2 cut(s) | 191, 364 |
| KasI | GGCGCC | 1 cut(s) | 190 |
| KroI | GCCGGC | 2 cut(s) | 223, 408 |
| KroNI | GCCGGC | 2 cut(s) | 225, 410 |
| Kzo9I | GATC | 1 cut(s) | 318 |
| LmnI | GCTCC | 3 cut(s) | 71, 171, 376 |
| Lsp1109I | GCAGC | 1 cut(s) | 36 |
| LweI | GCATC | 1 cut(s) | 129 |
| MaeI | CTAG | 2 cut(s) | 220, 353 |
| MalI | GATC | 1 cut(s) | 320 |
| MboI | GATC | 1 cut(s) | 318 |
| MhlI | GDGCHC | 1 cut(s) | 397 |
| Mly113I | GGCGCC | 1 cut(s) | 191 |
| MlyI | GAGTC | 1 cut(s) | 264 |
| MmeI | TCCRAC | 1 cut(s) | 398 |
| MnlI | CCTC | 8 cut(s) | 54, 62, 75, 270, 285, 360, 408, 414 |
| MroNI | GCCGGC | 2 cut(s) | 223, 408 |
| MseI | TTAA | 2 cut(s) | 37, 182 |
| MspA1I | CMGCKG | 2 cut(s) | 57, 267 |
| MspI | CCGG | 6 cut(s) | 152, 215, 224, 274, 331, 409 |
| MspR9I | CCNGG | 2 cut(s) | 25, 300 |
| MvaI | CCWGG | 2 cut(s) | 25, 300 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 20, 85, 148, 224 |
| NaeI | GCCGGC | 2 cut(s) | 225, 410 |
| NarI | GGCGCC | 1 cut(s) | 191 |
| NdeII | GATC | 1 cut(s) | 318 |
| NgoMIV | GCCGGC | 2 cut(s) | 223, 408 |
| NlaIII | CATG | 2 cut(s) | 348, 370 |
| NlaIV | GGNNCC | 4 cut(s) | 192, 278, 339, 372 |
| NmeAIII | GCCGAG | 1 cut(s) | 438 |
| NsbI | TGCGCA | 1 cut(s) | 365 |
| PagI | TCATGA | 1 cut(s) | 344 |
| PdiI | GCCGGC | 2 cut(s) | 225, 410 |
| PfeI | GAWTC | 1 cut(s) | 462 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 200 |
| PkrI | GCNGC | 3 cut(s) | 13, 51, 87 |
| PleI | GAGTC | 1 cut(s) | 264 |
| PluTI | GGCGCC | 1 cut(s) | 194 |
| PpsI | GAGTC | 1 cut(s) | 264 |
| Psp6I | CCWGG | 2 cut(s) | 23, 298 |
| PspFI | CCCAGC | 2 cut(s) | 53, 263 |
| PspGI | CCWGG | 2 cut(s) | 23, 298 |
| PspN4I | GGNNCC | 4 cut(s) | 192, 278, 339, 372 |
| PspPI | GGNCC | 2 cut(s) | 302, 338 |
| PvuII | CAGCTG | 1 cut(s) | 57 |
| RsaI | GTAC | 1 cut(s) | 324 |
| RsaNI | GTAC | 1 cut(s) | 323 |
| SaqAI | TTAA | 2 cut(s) | 37, 182 |
| SatI | GCNGC | 3 cut(s) | 12, 50, 86 |
| Sau3AI | GATC | 1 cut(s) | 318 |
| Sau96I | GGNCC | 2 cut(s) | 302, 338 |
| SchI | GAGTC | 1 cut(s) | 264 |
| ScrFI | CCNGG | 2 cut(s) | 25, 300 |
| SduI | GDGCHC | 1 cut(s) | 397 |
| SetI | ASST | 8 cut(s) | 29, 45, 59, 103, 176, 296, 352, 358 |
| SfaNI | GCATC | 1 cut(s) | 129 |
| SfoI | GGCGCC | 1 cut(s) | 192 |
| SinI | GGWCC | 1 cut(s) | 338 |
| SsiI | CCGC | 6 cut(s) | 12, 64, 86, 267, 406, 452 |
| SspDI | GGCGCC | 1 cut(s) | 190 |
| SspMI | CTAG | 2 cut(s) | 220, 353 |
| StyD4I | CCNGG | 2 cut(s) | 23, 298 |
| TaaI | ACNGT | 2 cut(s) | 93, 431 |
| TaqI | TCGA | 1 cut(s) | 358 |
| TauI | GCSGC | 2 cut(s) | 14, 88 |
| TfiI | GAWTC | 1 cut(s) | 462 |
| Tru1I | TTAA | 2 cut(s) | 37, 182 |
| Tru9I | TTAA | 2 cut(s) | 37, 182 |
| TscAI | CASTG | 3 cut(s) | 81, 96, 234 |
| TseI | GCWGC | 1 cut(s) | 49 |
| TspGWI | ACGGA | 1 cut(s) | 268 |
| TspRI | CASTG | 3 cut(s) | 81, 96, 234 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 200 |
| VpaK11BI | GGWCC | 1 cut(s) | 338 |
| XspI | CTAG | 2 cut(s) | 220, 353 |