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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 182, 395 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 192 |
| AccBSI | CCGCTC | 2 cut(s) | 389, 422 |
| AccI | GTMKAC | 1 cut(s) | 312 |
| AciI | CCGC | 9 cut(s) | 5, 81, 134, 213, 325, 389, 420, 445, 489 |
| AcsI | RAATTY | 2 cut(s) | 10, 365 |
| AcuI | CTGAAG | 2 cut(s) | 191, 369 |
| AcyI | GRCGYC | 1 cut(s) | 183 |
| AfaI | GTAC | 1 cut(s) | 113 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 192 |
| AjnI | CCWGG | 1 cut(s) | 424 |
| AleI | CACNNNNGTG | 1 cut(s) | 401 |
| AluBI | AGCT | 3 cut(s) | 56, 66, 463 |
| AluI | AGCT | 3 cut(s) | 56, 66, 463 |
| Alw21I | GWGCWC | 1 cut(s) | 277 |
| Ama87I | CYCGRG | 1 cut(s) | 497 |
| ApeKI | GCWGC | 4 cut(s) | 66, 77, 463, 491 |
| ApoI | RAATTY | 2 cut(s) | 10, 365 |
| AspLEI | GCGC | 1 cut(s) | 185 |
| AsuC2I | CCSGG | 2 cut(s) | 46, 217 |
| AsuHPI | GGTGA | 5 cut(s) | 31, 148, 208, 409, 415 |
| AvaI | CYCGRG | 1 cut(s) | 497 |
| BanI | GGYRCC | 2 cut(s) | 182, 395 |
| Bbv12I | GWGCWC | 1 cut(s) | 277 |
| BbvI | GCAGC | 4 cut(s) | 53, 64, 450, 478 |
| BccI | CCATC | 2 cut(s) | 121, 386 |
| BciT130I | CCWGG | 1 cut(s) | 426 |
| BclI | TGATCA | 1 cut(s) | 471 |
| BcnI | CCSGG | 2 cut(s) | 46, 217 |
| BfaI | CTAG | 2 cut(s) | 161, 411 |
| BfoI | RGCGCY | 1 cut(s) | 186 |
| BisI | GCNGC | 8 cut(s) | 5, 67, 78, 81, 445, 464, 489, 492 |
| BlsI | GCNGC | 8 cut(s) | 6, 68, 79, 82, 446, 465, 490, 493 |
| Bme1390I | CCNGG | 3 cut(s) | 46, 217, 426 |
| BmeT110I | CYCGRG | 1 cut(s) | 497 |
| BmiI | GGNNCC | 3 cut(s) | 184, 255, 397 |
| BmrFI | CCNGG | 3 cut(s) | 46, 217, 426 |
| BmrI | ACTGGG | 1 cut(s) | 202 |
| BmsI | GCATC | 1 cut(s) | 442 |
| BmuI | ACTGGG | 1 cut(s) | 202 |
| BpmI | CTGGAG | 1 cut(s) | 50 |
| Bpu10I | CCTNAGC | 1 cut(s) | 280 |
| BpuMI | CCSGG | 2 cut(s) | 46, 217 |
| BsaHI | GRCGYC | 1 cut(s) | 183 |
| BsaJI | CCNNGG | 1 cut(s) | 399 |
| BsaWI | WCCGGW | 1 cut(s) | 307 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 319, 349 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 192 |
| Bse1I | ACTGG | 1 cut(s) | 197 |
| BseBI | CCWGG | 1 cut(s) | 426 |
| BseDI | CCNNGG | 1 cut(s) | 399 |
| BseGI | GGATG | 2 cut(s) | 397, 457 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BseMII | CTCAG | 4 cut(s) | 6, 48, 294, 335 |
| BseNI | ACTGG | 1 cut(s) | 197 |
| BseRI | GAGGAG | 1 cut(s) | 104 |
| BseXI | GCAGC | 4 cut(s) | 53, 64, 450, 478 |
| BsgI | GTGCAG | 1 cut(s) | 381 |
| BshNI | GGYRCC | 2 cut(s) | 182, 395 |
| BsiHKAI | GWGCWC | 1 cut(s) | 277 |
| BsiHKCI | CYCGRG | 1 cut(s) | 497 |
| BsiSI | CCGG | 3 cut(s) | 46, 216, 308 |
| BslFI | GGGAC | 1 cut(s) | 190 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BsmFI | GGGAC | 1 cut(s) | 190 |
| BsoBI | CYCGRG | 1 cut(s) | 497 |
| Bsp1286I | GDGCHC | 1 cut(s) | 277 |
| Bsp143I | GATC | 1 cut(s) | 471 |
| Bsp19I | CCATGG | 1 cut(s) | 399 |
| BspACI | CCGC | 9 cut(s) | 5, 81, 134, 213, 325, 389, 420, 445, 489 |
| BspCNI | CTCAG | 4 cut(s) | 7, 49, 293, 334 |
| BspLI | GGNNCC | 3 cut(s) | 184, 255, 397 |
| BspQI | GCTCTTC | 1 cut(s) | 56 |
| BspT107I | GGYRCC | 2 cut(s) | 182, 395 |
| BsrBI | CCGCTC | 2 cut(s) | 389, 422 |
| BsrI | ACTGG | 1 cut(s) | 197 |
| BssECI | CCNNGG | 1 cut(s) | 399 |
| BssMI | GATC | 1 cut(s) | 471 |
| BssNI | GRCGYC | 1 cut(s) | 183 |
| BssT1I | CCWWGG | 1 cut(s) | 399 |
| Bst2UI | CCWGG | 1 cut(s) | 426 |
| Bst6I | CTCTTC | 2 cut(s) | 17, 56 |
| BstACI | GRCGYC | 1 cut(s) | 183 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 272 |
| BstC8I | GCNNGC | 5 cut(s) | 120, 240, 244, 264, 277 |
| BstDEI | CTNAG | 4 cut(s) | 15, 57, 280, 321 |
| BstDSI | CCRYGG | 1 cut(s) | 399 |
| BstF5I | GGATG | 2 cut(s) | 397, 457 |
| BstH2I | RGCGCY | 1 cut(s) | 186 |
| BstHHI | GCGC | 1 cut(s) | 185 |
| BstKTI | GATC | 1 cut(s) | 474 |
| BstMBI | GATC | 1 cut(s) | 471 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 140, 272 |
| BstNI | CCWGG | 1 cut(s) | 426 |
| BstNSI | RCATGY | 1 cut(s) | 169 |
| BstSCI | CCNGG | 3 cut(s) | 44, 215, 424 |
| BstV1I | GCAGC | 4 cut(s) | 53, 64, 450, 478 |
| BtgI | CCRYGG | 1 cut(s) | 399 |
| BtsCI | GGATG | 2 cut(s) | 397, 457 |
| BtsI | GCAGTG | 2 cut(s) | 90, 253 |
| BtsIMutI | CAGTG | 2 cut(s) | 90, 253 |
| Cac8I | GCNNGC | 5 cut(s) | 120, 240, 244, 264, 277 |
| CfoI | GCGC | 1 cut(s) | 185 |
| CseI | GACGC | 2 cut(s) | 192, 293 |
| Csp6I | GTAC | 1 cut(s) | 112 |
| CviAII | CATG | 4 cut(s) | 124, 166, 400, 448 |
| CviQI | GTAC | 1 cut(s) | 112 |
| DdeI | CTNAG | 4 cut(s) | 15, 57, 280, 321 |
| DinI | GGCGCC | 1 cut(s) | 184 |
| DpnI | GATC | 1 cut(s) | 473 |
| DpnII | GATC | 1 cut(s) | 471 |
| DraI | TTTAAA | 1 cut(s) | 97 |
| Eam1104I | CTCTTC | 2 cut(s) | 17, 56 |
| EarI | CTCTTC | 2 cut(s) | 17, 56 |
| Eco130I | CCWWGG | 1 cut(s) | 399 |
| Eco57I | CTGAAG | 2 cut(s) | 191, 369 |
| Eco88I | CYCGRG | 1 cut(s) | 497 |
| EcoRII | CCWGG | 1 cut(s) | 424 |
| EcoT14I | CCWWGG | 1 cut(s) | 399 |
| EgeI | GGCGCC | 1 cut(s) | 184 |
| EheI | GGCGCC | 1 cut(s) | 184 |
| ErhI | CCWWGG | 1 cut(s) | 399 |
| FaeI | CATG | 4 cut(s) | 127, 169, 403, 451 |
| FaiI | YATR | 5 cut(s) | 125, 167, 371, 401, 449 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 53, 85 |
| FaqI | GGGAC | 1 cut(s) | 190 |
| FatI | CATG | 4 cut(s) | 123, 165, 399, 447 |
| FauI | CCCGC | 1 cut(s) | 220 |
| FbaI | TGATCA | 1 cut(s) | 471 |
| FblI | GTMKAC | 1 cut(s) | 312 |
| Fnu4HI | GCNGC | 8 cut(s) | 5, 67, 78, 81, 445, 464, 489, 492 |
| FokI | GGATG | 2 cut(s) | 404, 464 |
| Fsp4HI | GCNGC | 8 cut(s) | 5, 67, 78, 81, 445, 464, 489, 492 |
| FspBI | CTAG | 2 cut(s) | 161, 411 |
| GlaI | GCGC | 1 cut(s) | 184 |
| GluI | GCNGC | 8 cut(s) | 5, 67, 78, 81, 445, 464, 489, 492 |
| GsuI | CTGGAG | 1 cut(s) | 50 |
| HaeII | RGCGCY | 1 cut(s) | 186 |
| HapII | CCGG | 3 cut(s) | 46, 216, 308 |
| HgaI | GACGC | 2 cut(s) | 192, 293 |
| HhaI | GCGC | 1 cut(s) | 185 |
| Hin1I | GRCGYC | 1 cut(s) | 183 |
| Hin1II | CATG | 4 cut(s) | 127, 169, 403, 451 |
| Hin6I | GCGC | 1 cut(s) | 183 |
| HinP1I | GCGC | 1 cut(s) | 183 |
| HinfI | GANTC | 1 cut(s) | 328 |
| HpaII | CCGG | 3 cut(s) | 46, 216, 308 |
| HphI | GGTGA | 5 cut(s) | 31, 148, 208, 409, 415 |
| Hpy166II | GTNNAC | 2 cut(s) | 313, 379 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 231, 349 |
| Hpy188III | TCNNGA | 2 cut(s) | 497, 499 |
| Hpy8I | GTNNAC | 2 cut(s) | 313, 379 |
| HpyAV | CCTTC | 2 cut(s) | 133, 172 |
| HpyCH4V | TGCA | 1 cut(s) | 362 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 140, 272 |
| HpyF3I | CTNAG | 4 cut(s) | 15, 57, 280, 321 |
| Hsp92I | GRCGYC | 1 cut(s) | 183 |
| Hsp92II | CATG | 4 cut(s) | 127, 169, 403, 451 |
| HspAI | GCGC | 1 cut(s) | 183 |
| KasI | GGCGCC | 1 cut(s) | 182 |
| Ksp22I | TGATCA | 1 cut(s) | 471 |
| Kzo9I | GATC | 1 cut(s) | 471 |
| LguI | GCTCTTC | 1 cut(s) | 56 |
| LmnI | GCTCC | 1 cut(s) | 427 |
| Lsp1109I | GCAGC | 4 cut(s) | 53, 64, 450, 478 |
| LweI | GCATC | 1 cut(s) | 442 |
| MaeI | CTAG | 2 cut(s) | 161, 411 |
| MaeIII | GTNAC | 1 cut(s) | 403 |
| MalI | GATC | 1 cut(s) | 473 |
| MbiI | CCGCTC | 2 cut(s) | 389, 422 |
| MboI | GATC | 1 cut(s) | 471 |
| MboII | GAAGA | 2 cut(s) | 34, 73 |
| MhlI | GDGCHC | 1 cut(s) | 277 |
| MluCI | AATT | 5 cut(s) | 10, 101, 316, 365, 502 |
| Mly113I | GGCGCC | 1 cut(s) | 183 |
| MlyI | GAGTC | 1 cut(s) | 322 |
| MseI | TTAA | 1 cut(s) | 96 |
| MslI | CAYNNNNRTG | 1 cut(s) | 401 |
| MspA1I | CMGCKG | 3 cut(s) | 325, 463, 491 |
| MspI | CCGG | 3 cut(s) | 46, 216, 308 |
| MspR9I | CCNGG | 3 cut(s) | 46, 217, 426 |
| MssI | GTTTAAAC | 1 cut(s) | 97 |
| MvaI | CCWGG | 1 cut(s) | 426 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 140, 272 |
| NarI | GGCGCC | 1 cut(s) | 183 |
| NciI | CCSGG | 2 cut(s) | 46, 217 |
| NcoI | CCATGG | 1 cut(s) | 399 |
| NdeII | GATC | 1 cut(s) | 471 |
| NlaIII | CATG | 4 cut(s) | 127, 169, 403, 451 |
| NlaIV | GGNNCC | 3 cut(s) | 184, 255, 397 |
| NmuCI | GTSAC | 1 cut(s) | 403 |
| NspI | RCATGY | 1 cut(s) | 169 |
| OliI | CACNNNNGTG | 1 cut(s) | 401 |
| PaeR7I | CTCGAG | 1 cut(s) | 497 |
| PciSI | GCTCTTC | 1 cut(s) | 56 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 192 |
| PfoI | TCCNGGA | 1 cut(s) | 424 |
| PkrI | GCNGC | 8 cut(s) | 6, 68, 79, 82, 446, 465, 490, 493 |
| PleI | GAGTC | 1 cut(s) | 322 |
| PluTI | GGCGCC | 1 cut(s) | 186 |
| PmeI | GTTTAAAC | 1 cut(s) | 97 |
| PpsI | GAGTC | 1 cut(s) | 322 |
| Psp6I | CCWGG | 1 cut(s) | 424 |
| PspGI | CCWGG | 1 cut(s) | 424 |
| PspN4I | GGNNCC | 3 cut(s) | 184, 255, 397 |
| PvuII | CAGCTG | 1 cut(s) | 463 |
| RsaI | GTAC | 1 cut(s) | 113 |
| RsaNI | GTAC | 1 cut(s) | 112 |
| RseI | CAYNNNNRTG | 1 cut(s) | 401 |
| SapI | GCTCTTC | 1 cut(s) | 56 |
| SaqAI | TTAA | 1 cut(s) | 96 |
| SatI | GCNGC | 8 cut(s) | 5, 67, 78, 81, 445, 464, 489, 492 |
| Sau3AI | GATC | 1 cut(s) | 471 |
| SchI | GAGTC | 1 cut(s) | 322 |
| ScrFI | CCNGG | 3 cut(s) | 46, 217, 426 |
| SduI | GDGCHC | 1 cut(s) | 277 |
| SfaNI | GCATC | 1 cut(s) | 442 |
| SfoI | GGCGCC | 1 cut(s) | 184 |
| Sfr274I | CTCGAG | 1 cut(s) | 497 |
| SlaI | CTCGAG | 1 cut(s) | 497 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 401 |
| SmlI | CTYRAG | 1 cut(s) | 497 |
| SmoI | CTYRAG | 1 cut(s) | 497 |
| Sse9I | AATT | 5 cut(s) | 10, 101, 316, 365, 502 |
| SsiI | CCGC | 9 cut(s) | 5, 81, 134, 213, 325, 389, 420, 445, 489 |
| SspDI | GGCGCC | 1 cut(s) | 182 |
| SspMI | CTAG | 2 cut(s) | 161, 411 |
| StyD4I | CCNGG | 3 cut(s) | 44, 215, 424 |
| StyI | CCWWGG | 1 cut(s) | 399 |
| TaqI | TCGA | 1 cut(s) | 498 |
| TasI | AATT | 5 cut(s) | 10, 101, 316, 365, 502 |
| TatI | WGTACW | 1 cut(s) | 111 |
| TauI | GCSGC | 4 cut(s) | 7, 83, 447, 491 |
| Tru1I | TTAA | 1 cut(s) | 96 |
| Tru9I | TTAA | 1 cut(s) | 96 |
| TscAI | CASTG | 2 cut(s) | 90, 253 |
| TseFI | GTSAC | 1 cut(s) | 403 |
| TseI | GCWGC | 4 cut(s) | 66, 77, 463, 491 |
| Tsp45I | GTSAC | 1 cut(s) | 403 |
| TspDTI | ATGAA | 1 cut(s) | 492 |
| TspRI | CASTG | 2 cut(s) | 90, 253 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 192 |
| XapI | RAATTY | 2 cut(s) | 10, 365 |
| XceI | RCATGY | 1 cut(s) | 169 |
| XhoI | CTCGAG | 1 cut(s) | 497 |
| XmiI | GTMKAC | 1 cut(s) | 312 |
| XspI | CTAG | 2 cut(s) | 161, 411 |