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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 586 |
| AccB1I | GGYRCC | 2 cut(s) | 444, 735 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 390 |
| AccI | GTMKAC | 2 cut(s) | 291, 500 |
| AccII | CGCG | 1 cut(s) | 423 |
| AclWI | GGATC | 3 cut(s) | 67, 121, 134 |
| AcyI | GRCGYC | 1 cut(s) | 736 |
| AfaI | GTAC | 2 cut(s) | 50, 227 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 14, 42, 322, 387, 390, 455, 568, 745, 856 |
| AgsI | TTSAA | 1 cut(s) | 568 |
| AjiI | CACGTC | 1 cut(s) | 805 |
| AjnI | CCWGG | 1 cut(s) | 827 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 309, 341 |
| AluBI | AGCT | 6 cut(s) | 187, 375, 639, 657, 697, 781 |
| AluI | AGCT | 6 cut(s) | 187, 375, 639, 657, 697, 781 |
| Alw26I | GTCTC | 3 cut(s) | 520, 689, 698 |
| AlwI | GGATC | 3 cut(s) | 67, 121, 134 |
| AoxI | GGCC | 2 cut(s) | 364, 558 |
| ApeKI | GCWGC | 1 cut(s) | 429 |
| AspLEI | GCGC | 4 cut(s) | 310, 423, 738, 799 |
| AspS9I | GGNCC | 4 cut(s) | 18, 365, 537, 559 |
| AsuC2I | CCSGG | 1 cut(s) | 235 |
| AsuHPI | GGTGA | 2 cut(s) | 494, 583 |
| AvaII | GGWCC | 2 cut(s) | 18, 537 |
| BaeGI | GKGCMC | 1 cut(s) | 449 |
| BamHI | GGATCC | 1 cut(s) | 126 |
| BanI | GGYRCC | 2 cut(s) | 444, 735 |
| BanII | GRGCYC | 1 cut(s) | 217 |
| BbvI | GCAGC | 1 cut(s) | 441 |
| BccI | CCATC | 2 cut(s) | 32, 36 |
| BceAI | ACGGC | 1 cut(s) | 776 |
| BciT130I | CCWGG | 1 cut(s) | 829 |
| BcnI | CCSGG | 1 cut(s) | 235 |
| BcoDI | GTCTC | 3 cut(s) | 520, 689, 698 |
| BfaI | CTAG | 4 cut(s) | 131, 158, 585, 833 |
| BfoI | RGCGCY | 2 cut(s) | 311, 739 |
| BglII | AGATCT | 1 cut(s) | 160 |
| BisI | GCNGC | 6 cut(s) | 115, 347, 430, 734, 762, 775 |
| BlpI | GCTNAGC | 1 cut(s) | 311 |
| BlsI | GCNGC | 6 cut(s) | 116, 348, 431, 735, 763, 776 |
| BmcAI | AGTACT | 1 cut(s) | 227 |
| Bme1390I | CCNGG | 2 cut(s) | 235, 829 |
| Bme18I | GGWCC | 2 cut(s) | 18, 537 |
| BmgBI | CACGTC | 1 cut(s) | 805 |
| BmgT120I | GGNCC | 4 cut(s) | 18, 365, 537, 559 |
| BmrFI | CCNGG | 2 cut(s) | 235, 829 |
| BmrI | ACTGGG | 1 cut(s) | 490 |
| BmsI | GCATC | 5 cut(s) | 269, 333, 715, 748, 757 |
| BmuI | ACTGGG | 1 cut(s) | 490 |
| BoxI | GACNNNNGTC | 1 cut(s) | 287 |
| BpmI | CTGGAG | 4 cut(s) | 526, 671, 679, 811 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 311 |
| BpuMI | CCSGG | 1 cut(s) | 235 |
| BsaHI | GRCGYC | 1 cut(s) | 736 |
| BsaI | GGTCTC | 1 cut(s) | 689 |
| BsaJI | CCNNGG | 6 cut(s) | 8, 217, 330, 361, 610, 744 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 466, 496, 809, 839 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 14, 42, 322, 387, 390, 455, 568, 745, 856 |
| Bse118I | RCCGGY | 1 cut(s) | 176 |
| Bse1I | ACTGG | 1 cut(s) | 496 |
| Bse3DI | GCAATG | 1 cut(s) | 414 |
| BseBI | CCWGG | 1 cut(s) | 829 |
| BseDI | CCNNGG | 6 cut(s) | 8, 217, 330, 361, 610, 744 |
| BseGI | GGATG | 3 cut(s) | 47, 243, 513 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 14, 42, 322, 387, 390, 455, 568, 745, 856 |
| BseMI | GCAATG | 1 cut(s) | 414 |
| BseMII | CTCAG | 3 cut(s) | 302, 311, 312 |
| BseNI | ACTGG | 1 cut(s) | 496 |
| BseRI | GAGGAG | 1 cut(s) | 686 |
| BseSI | GKGCMC | 1 cut(s) | 449 |
| BseXI | GCAGC | 1 cut(s) | 441 |
| BsgI | GTGCAG | 2 cut(s) | 448, 617 |
| Bsh1236I | CGCG | 1 cut(s) | 423 |
| Bsh1285I | CGRYCG | 1 cut(s) | 199 |
| BshFI | GGCC | 2 cut(s) | 366, 560 |
| BshNI | GGYRCC | 2 cut(s) | 444, 735 |
| BsiEI | CGRYCG | 1 cut(s) | 199 |
| BsiSI | CCGG | 2 cut(s) | 177, 235 |
| BslFI | GGGAC | 2 cut(s) | 31, 397 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 14, 42, 322, 387, 390, 455, 568, 745, 856 |
| BsmAI | GTCTC | 3 cut(s) | 520, 689, 698 |
| BsmFI | GGGAC | 2 cut(s) | 31, 397 |
| BsnI | GGCC | 2 cut(s) | 366, 560 |
| Bso31I | GGTCTC | 1 cut(s) | 689 |
| Bsp1286I | GDGCHC | 2 cut(s) | 217, 449 |
| Bsp143I | GATC | 5 cut(s) | 59, 126, 160, 196, 675 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 311 |
| BspANI | GGCC | 2 cut(s) | 366, 560 |
| BspCNI | CTCAG | 3 cut(s) | 303, 310, 313 |
| BspFNI | CGCG | 1 cut(s) | 423 |
| BspPI | GGATC | 3 cut(s) | 67, 121, 134 |
| BspT107I | GGYRCC | 2 cut(s) | 444, 735 |
| BspTNI | GGTCTC | 1 cut(s) | 689 |
| BsrDI | GCAATG | 1 cut(s) | 414 |
| BsrFI | RCCGGY | 1 cut(s) | 176 |
| BsrI | ACTGG | 1 cut(s) | 496 |
| BssAI | RCCGGY | 1 cut(s) | 176 |
| BssECI | CCNNGG | 6 cut(s) | 8, 217, 330, 361, 610, 744 |
| BssMI | GATC | 5 cut(s) | 59, 126, 160, 196, 675 |
| BssNI | GRCGYC | 1 cut(s) | 736 |
| BssT1I | CCWWGG | 3 cut(s) | 8, 217, 744 |
| Bst2UI | CCWGG | 1 cut(s) | 829 |
| Bst4CI | ACNGT | 3 cut(s) | 286, 577, 716 |
| Bst6I | CTCTTC | 1 cut(s) | 102 |
| BstACI | GRCGYC | 1 cut(s) | 736 |
| BstC8I | GCNNGC | 9 cut(s) | 140, 377, 381, 449, 558, 655, 699, 772, 779 |
| BstDEI | CTNAG | 4 cut(s) | 297, 311, 321, 708 |
| BstDSI | CCRYGG | 2 cut(s) | 330, 610 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 743, 854 |
| BstF5I | GGATG | 3 cut(s) | 47, 243, 513 |
| BstFNI | CGCG | 1 cut(s) | 423 |
| BstH2I | RGCGCY | 2 cut(s) | 311, 739 |
| BstHHI | GCGC | 4 cut(s) | 310, 423, 738, 799 |
| BstKTI | GATC | 5 cut(s) | 62, 129, 163, 199, 678 |
| BstMAI | GTCTC | 3 cut(s) | 520, 689, 698 |
| BstMBI | GATC | 5 cut(s) | 59, 126, 160, 196, 675 |
| BstMCI | CGRYCG | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 346, 372, 429, 465, 767 |
| BstNI | CCWGG | 1 cut(s) | 829 |
| BstNSI | RCATGY | 1 cut(s) | 256 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 287 |
| BstSCI | CCNGG | 2 cut(s) | 233, 827 |
| BstSLI | GKGCMC | 1 cut(s) | 449 |
| BstUI | CGCG | 1 cut(s) | 423 |
| BstV1I | GCAGC | 1 cut(s) | 441 |
| BstX2I | RGATCY | 2 cut(s) | 126, 160 |
| BstYI | RGATCY | 2 cut(s) | 126, 160 |
| BsuRI | GGCC | 2 cut(s) | 366, 560 |
| BtgI | CCRYGG | 2 cut(s) | 330, 610 |
| BtrI | CACGTC | 1 cut(s) | 805 |
| BtsCI | GGATG | 3 cut(s) | 47, 243, 513 |
| Cac8I | GCNNGC | 9 cut(s) | 140, 377, 381, 449, 558, 655, 699, 772, 779 |
| CfoI | GCGC | 4 cut(s) | 310, 423, 738, 799 |
| Cfr10I | RCCGGY | 1 cut(s) | 176 |
| Cfr13I | GGNCC | 4 cut(s) | 18, 365, 537, 559 |
| Csp6I | GTAC | 2 cut(s) | 49, 226 |
| CviAII | CATG | 1 cut(s) | 253 |
| CviQI | GTAC | 2 cut(s) | 49, 226 |
| DdeI | CTNAG | 4 cut(s) | 297, 311, 321, 708 |
| DinI | GGCGCC | 1 cut(s) | 737 |
| DpnI | GATC | 5 cut(s) | 61, 128, 162, 198, 677 |
| DpnII | GATC | 5 cut(s) | 59, 126, 160, 196, 675 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 586 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 586 |
| Eam1104I | CTCTTC | 1 cut(s) | 102 |
| EarI | CTCTTC | 1 cut(s) | 102 |
| EciI | GGCGGA | 2 cut(s) | 416, 716 |
| Eco130I | CCWWGG | 3 cut(s) | 8, 217, 744 |
| Eco24I | GRGCYC | 1 cut(s) | 217 |
| Eco31I | GGTCTC | 1 cut(s) | 689 |
| Eco47I | GGWCC | 2 cut(s) | 18, 537 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 743, 854 |
| EcoO109I | RGGNCCY | 3 cut(s) | 18, 537, 559 |
| EcoRII | CCWGG | 1 cut(s) | 827 |
| EcoT14I | CCWWGG | 3 cut(s) | 8, 217, 744 |
| EcoT22I | ATGCAT | 1 cut(s) | 262 |
| EcoT38I | GRGCYC | 1 cut(s) | 217 |
| EgeI | GGCGCC | 1 cut(s) | 737 |
| EheI | GGCGCC | 1 cut(s) | 737 |
| ErhI | CCWWGG | 3 cut(s) | 8, 217, 744 |
| FaeI | CATG | 1 cut(s) | 256 |
| FaiI | YATR | 4 cut(s) | 254, 258, 434, 845 |
| FaqI | GGGAC | 2 cut(s) | 31, 397 |
| FatI | CATG | 1 cut(s) | 252 |
| FauI | CCCGC | 3 cut(s) | 6, 388, 456 |
| FblI | GTMKAC | 2 cut(s) | 291, 500 |
| Fnu4HI | GCNGC | 6 cut(s) | 115, 347, 430, 734, 762, 775 |
| FokI | GGATG | 3 cut(s) | 54, 250, 520 |
| FriOI | GRGCYC | 1 cut(s) | 217 |
| Fsp4HI | GCNGC | 6 cut(s) | 115, 347, 430, 734, 762, 775 |
| FspBI | CTAG | 4 cut(s) | 131, 158, 585, 833 |
| GlaI | GCGC | 4 cut(s) | 309, 422, 737, 798 |
| GluI | GCNGC | 6 cut(s) | 115, 347, 430, 734, 762, 775 |
| GsuI | CTGGAG | 4 cut(s) | 526, 671, 679, 811 |
| HaeII | RGCGCY | 2 cut(s) | 311, 739 |
| HaeIII | GGCC | 2 cut(s) | 366, 560 |
| HapII | CCGG | 2 cut(s) | 177, 235 |
| HhaI | GCGC | 4 cut(s) | 310, 423, 738, 799 |
| Hin1I | GRCGYC | 1 cut(s) | 736 |
| Hin1II | CATG | 1 cut(s) | 256 |
| Hin6I | GCGC | 4 cut(s) | 308, 421, 736, 797 |
| HinP1I | GCGC | 4 cut(s) | 308, 421, 736, 797 |
| HincII | GTYRAC | 3 cut(s) | 207, 292, 501 |
| HindII | GTYRAC | 3 cut(s) | 207, 292, 501 |
| HinfI | GANTC | 1 cut(s) | 665 |
| HpaII | CCGG | 2 cut(s) | 177, 235 |
| HphI | GGTGA | 2 cut(s) | 494, 583 |
| Hpy166II | GTNNAC | 3 cut(s) | 207, 292, 501 |
| Hpy188I | TCNGA | 4 cut(s) | 300, 322, 592, 670 |
| Hpy188III | TCNNGA | 1 cut(s) | 688 |
| Hpy8I | GTNNAC | 3 cut(s) | 207, 292, 501 |
| Hpy99I | CGWCG | 1 cut(s) | 293 |
| HpyAV | CCTTC | 5 cut(s) | 31, 465, 546, 562, 850 |
| HpyCH4III | ACNGT | 3 cut(s) | 286, 577, 716 |
| HpyCH4IV | ACGT | 1 cut(s) | 804 |
| HpyCH4V | TGCA | 5 cut(s) | 260, 429, 468, 598, 728 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 346, 372, 429, 465, 767 |
| HpyF3I | CTNAG | 4 cut(s) | 297, 311, 321, 708 |
| HpySE526I | ACGT | 1 cut(s) | 804 |
| Hsp92I | GRCGYC | 1 cut(s) | 736 |
| Hsp92II | CATG | 1 cut(s) | 256 |
| HspAI | GCGC | 4 cut(s) | 308, 421, 736, 797 |
| KasI | GGCGCC | 1 cut(s) | 735 |
| Kzo9I | GATC | 5 cut(s) | 59, 126, 160, 196, 675 |
| LmnI | GCTCC | 4 cut(s) | 73, 212, 694, 808 |
| Lsp1109I | GCAGC | 1 cut(s) | 441 |
| LweI | GCATC | 5 cut(s) | 269, 333, 715, 748, 757 |
| MaeI | CTAG | 4 cut(s) | 131, 158, 585, 833 |
| MaeII | ACGT | 1 cut(s) | 804 |
| MaeIII | GTNAC | 4 cut(s) | 3, 482, 571, 577 |
| MalI | GATC | 5 cut(s) | 61, 128, 162, 198, 677 |
| MboI | GATC | 5 cut(s) | 59, 126, 160, 196, 675 |
| MboII | GAAGA | 3 cut(s) | 119, 561, 615 |
| MflI | RGATCY | 2 cut(s) | 126, 160 |
| MhlI | GDGCHC | 2 cut(s) | 217, 449 |
| MluCI | AATT | 1 cut(s) | 151 |
| Mly113I | GGCGCC | 1 cut(s) | 736 |
| MmeI | TCCRAC | 1 cut(s) | 570 |
| Mph1103I | ATGCAT | 1 cut(s) | 262 |
| MseI | TTAA | 2 cut(s) | 90, 248 |
| MspA1I | CMGCKG | 1 cut(s) | 764 |
| MspI | CCGG | 2 cut(s) | 177, 235 |
| MspR9I | CCNGG | 2 cut(s) | 235, 829 |
| MvaI | CCWGG | 1 cut(s) | 829 |
| MvnI | CGCG | 1 cut(s) | 423 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 346, 372, 429, 465, 767 |
| NarI | GGCGCC | 1 cut(s) | 736 |
| NciI | CCSGG | 1 cut(s) | 235 |
| NdeII | GATC | 5 cut(s) | 59, 126, 160, 196, 675 |
| NlaIII | CATG | 1 cut(s) | 256 |
| NmeAIII | GCCGAG | 1 cut(s) | 342 |
| NmuCI | GTSAC | 4 cut(s) | 3, 482, 571, 577 |
| NsiI | ATGCAT | 1 cut(s) | 262 |
| NspI | RCATGY | 1 cut(s) | 256 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 497 |
| PfeI | GAWTC | 1 cut(s) | 665 |
| PflFI | GACNNNGTC | 1 cut(s) | 496 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 390 |
| PfoI | TCCNGGA | 1 cut(s) | 233 |
| PkrI | GCNGC | 6 cut(s) | 116, 348, 431, 735, 763, 776 |
| Ple19I | CGATCG | 1 cut(s) | 199 |
| PluTI | GGCGCC | 1 cut(s) | 739 |
| PpuMI | RGGWCCY | 2 cut(s) | 18, 537 |
| PshAI | GACNNNNGTC | 1 cut(s) | 287 |
| Psp5II | RGGWCCY | 2 cut(s) | 18, 537 |
| Psp6I | CCWGG | 1 cut(s) | 827 |
| PspGI | CCWGG | 1 cut(s) | 827 |
| PspPI | GGNCC | 4 cut(s) | 18, 365, 537, 559 |
| PspPPI | RGGWCCY | 2 cut(s) | 18, 537 |
| PsuI | RGATCY | 2 cut(s) | 126, 160 |
| PsyI | GACNNNGTC | 1 cut(s) | 496 |
| PvuI | CGATCG | 1 cut(s) | 199 |
| RsaI | GTAC | 2 cut(s) | 50, 227 |
| RsaNI | GTAC | 2 cut(s) | 49, 226 |
| SalI | GTCGAC | 2 cut(s) | 290, 499 |
| SaqAI | TTAA | 2 cut(s) | 90, 248 |
| SatI | GCNGC | 6 cut(s) | 115, 347, 430, 734, 762, 775 |
| Sau3AI | GATC | 5 cut(s) | 59, 126, 160, 196, 675 |
| Sau96I | GGNCC | 4 cut(s) | 18, 365, 537, 559 |
| ScaI | AGTACT | 1 cut(s) | 227 |
| ScrFI | CCNGG | 2 cut(s) | 235, 829 |
| SduI | GDGCHC | 2 cut(s) | 217, 449 |
| SfaNI | GCATC | 5 cut(s) | 269, 333, 715, 748, 757 |
| SfoI | GGCGCC | 1 cut(s) | 737 |
| SinI | GGWCC | 2 cut(s) | 18, 537 |
| Sse9I | AATT | 1 cut(s) | 151 |
| SspDI | GGCGCC | 1 cut(s) | 735 |
| SspMI | CTAG | 4 cut(s) | 131, 158, 585, 833 |
| StyD4I | CCNGG | 2 cut(s) | 233, 827 |
| StyI | CCWWGG | 3 cut(s) | 8, 217, 744 |
| TaaI | ACNGT | 3 cut(s) | 286, 577, 716 |
| TaiI | ACGT | 1 cut(s) | 807 |
| TaqI | TCGA | 5 cut(s) | 62, 195, 291, 500, 678 |
| TasI | AATT | 1 cut(s) | 151 |
| TatI | WGTACW | 1 cut(s) | 225 |
| TauI | GCSGC | 5 cut(s) | 117, 349, 736, 764, 777 |
| TfiI | GAWTC | 1 cut(s) | 665 |
| Tru1I | TTAA | 2 cut(s) | 90, 248 |
| Tru9I | TTAA | 2 cut(s) | 90, 248 |
| TseFI | GTSAC | 4 cut(s) | 3, 482, 571, 577 |
| TseI | GCWGC | 1 cut(s) | 429 |
| Tsp45I | GTSAC | 4 cut(s) | 3, 482, 571, 577 |
| TspDTI | ATGAA | 1 cut(s) | 527 |
| Tth111I | GACNNNGTC | 1 cut(s) | 496 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 390 |
| VpaK11BI | GGWCC | 2 cut(s) | 18, 537 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 743, 854 |
| XceI | RCATGY | 1 cut(s) | 256 |
| XmiI | GTMKAC | 2 cut(s) | 291, 500 |
| XspI | CTAG | 4 cut(s) | 131, 158, 585, 833 |
| ZrmI | AGTACT | 1 cut(s) | 227 |
| Zsp2I | ATGCAT | 1 cut(s) | 262 |