Putative gypsy type transposon
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 773 |
| AatII | GACGTC | 1 cut(s) | 12 |
| AccB1I | GGYRCC | 4 cut(s) | 442, 977, 1195, 1234 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 507 |
| AccBSI | CCGCTC | 6 cut(s) | 1126, 1476, 1552, 1690, 1831, 1843 |
| AccI | GTMKAC | 1 cut(s) | 1589 |
| AccII | CGCG | 7 cut(s) | 335, 420, 828, 986, 1037, 1230, 1404 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AclI | AACGTT | 1 cut(s) | 1818 |
| AclWI | GGATC | 6 cut(s) | 49, 451, 568, 930, 1899, 1918 |
| AcoI | YGGCCR | 3 cut(s) | 3, 1899, 2016 |
| AcsI | RAATTY | 2 cut(s) | 73, 877 |
| AcuI | CTGAAG | 3 cut(s) | 66, 329, 1703 |
| AcyI | GRCGYC | 5 cut(s) | 9, 978, 1196, 1667, 1800 |
| AfaI | GTAC | 7 cut(s) | 602, 695, 737, 940, 1034, 1327, 1471 |
| AflII | CTTAAG | 1 cut(s) | 1928 |
| AflIII | ACRYGT | 3 cut(s) | 504, 1035, 1875 |
| AgsI | TTSAA | 3 cut(s) | 301, 375, 947 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 688 |
| AjiI | CACGTC | 1 cut(s) | 1633 |
| AjnI | CCWGG | 5 cut(s) | 612, 1020, 1659, 1680, 1740 |
| AleI | CACNNNNGTG | 1 cut(s) | 1140 |
| AluBI | AGCT | 7 cut(s) | 343, 664, 1092, 1696, 1864, 1966, 1997 |
| AluI | AGCT | 7 cut(s) | 343, 664, 1092, 1696, 1864, 1966, 1997 |
| Alw21I | GWGCWC | 4 cut(s) | 257, 405, 1094, 1698 |
| Alw26I | GTCTC | 2 cut(s) | 263, 899 |
| Alw44I | GTGCAC | 1 cut(s) | 401 |
| AlwI | GGATC | 6 cut(s) | 49, 451, 568, 930, 1899, 1918 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 460, 931, 1681 |
| Ama87I | CYCGRG | 2 cut(s) | 1363, 1436 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| AoxI | GGCC | 9 cut(s) | 3, 388, 1307, 1398, 1714, 1737, 1779, 1899, 2016 |
| ApaI | GGGCCC | 1 cut(s) | 1402 |
| ApaLI | GTGCAC | 1 cut(s) | 401 |
| ApoI | RAATTY | 2 cut(s) | 73, 877 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1336, 1368 |
| AspLEI | GCGC | 9 cut(s) | 62, 222, 335, 526, 658, 980, 1198, 1230, 1254 |
| AsuC2I | CCSGG | 4 cut(s) | 330, 957, 1106, 1396 |
| AsuHPI | GGTGA | 8 cut(s) | 349, 1078, 1157, 1261, 1532, 1532, 1627, 1849 |
| AvaI | CYCGRG | 2 cut(s) | 1363, 1436 |
| AvaII | GGWCC | 5 cut(s) | 747, 997, 1102, 1173, 1332 |
| AxyI | CCTNAGG | 1 cut(s) | 677 |
| BaeGI | GKGCMC | 5 cut(s) | 405, 447, 500, 1402, 1632 |
| BanI | GGYRCC | 4 cut(s) | 442, 977, 1195, 1234 |
| BanII | GRGCYC | 3 cut(s) | 1094, 1402, 1698 |
| BauI | CACGAG | 1 cut(s) | 404 |
| BbsI | GAAGAC | 1 cut(s) | 1064 |
| Bbv12I | GWGCWC | 4 cut(s) | 257, 405, 1094, 1698 |
| BbvCI | CCTCAGC | 2 cut(s) | 1338, 1998 |
| BccI | CCATC | 1 cut(s) | 803 |
| BceAI | ACGGC | 5 cut(s) | 738, 957, 1335, 1580, 1886 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1772, 1806 |
| BciT130I | CCWGG | 5 cut(s) | 614, 1022, 1661, 1682, 1742 |
| BcnI | CCSGG | 4 cut(s) | 330, 957, 1106, 1396 |
| BcoDI | GTCTC | 2 cut(s) | 263, 899 |
| BfaI | CTAG | 3 cut(s) | 131, 161, 177 |
| BfmI | CTRYAG | 2 cut(s) | 146, 452 |
| BfoI | RGCGCY | 5 cut(s) | 223, 527, 659, 981, 1199 |
| BfrI | CTTAAG | 1 cut(s) | 1928 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1952 |
| Bme1390I | CCNGG | 9 cut(s) | 330, 614, 957, 1022, 1106, 1396, 1661, 1682, 1742 |
| Bme18I | GGWCC | 5 cut(s) | 747, 997, 1102, 1173, 1332 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 688 |
| BmeT110I | CYCGRG | 2 cut(s) | 1363, 1436 |
| BmgBI | CACGTC | 1 cut(s) | 1633 |
| BmrFI | CCNGG | 9 cut(s) | 330, 614, 957, 1022, 1106, 1396, 1661, 1682, 1742 |
| BmsI | GCATC | 2 cut(s) | 486, 1780 |
| BoxI | GACNNNNGTC | 1 cut(s) | 891 |
| BpiI | GAAGAC | 1 cut(s) | 1064 |
| BpmI | CTGGAG | 2 cut(s) | 1341, 1886 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1338, 1697, 1998 |
| BpuMI | CCSGG | 4 cut(s) | 330, 957, 1106, 1396 |
| BsaAI | YACGTR | 1 cut(s) | 604 |
| BsaHI | GRCGYC | 5 cut(s) | 9, 978, 1196, 1667, 1800 |
| BsaWI | WCCGGW | 2 cut(s) | 38, 321 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 752, 782 |
| Bse118I | RCCGGY | 3 cut(s) | 303, 1175, 1216 |
| Bse1I | ACTGG | 3 cut(s) | 383, 600, 701 |
| Bse21I | CCTNAGG | 1 cut(s) | 677 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 5 cut(s) | 614, 1022, 1661, 1682, 1742 |
| BseGI | GGATG | 2 cut(s) | 288, 795 |
| BseMII | CTCAG | 8 cut(s) | 652, 668, 1067, 1089, 1352, 1711, 1947, 1989 |
| BseNI | ACTGG | 3 cut(s) | 383, 600, 701 |
| BseRI | GAGGAG | 1 cut(s) | 377 |
| BseSI | GKGCMC | 5 cut(s) | 405, 447, 500, 1402, 1632 |
| BseX3I | CGGCCG | 1 cut(s) | 2016 |
| BseYI | CCCAGC | 1 cut(s) | 1555 |
| BsgI | GTGCAG | 1 cut(s) | 126 |
| Bsh1236I | CGCG | 7 cut(s) | 335, 420, 828, 986, 1037, 1230, 1404 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1593, 2019 |
| BshFI | GGCC | 9 cut(s) | 5, 390, 1309, 1400, 1716, 1739, 1781, 1901, 2018 |
| BshNI | GGYRCC | 4 cut(s) | 442, 977, 1195, 1234 |
| BsiEI | CGRYCG | 2 cut(s) | 1593, 2019 |
| BsiHKAI | GWGCWC | 4 cut(s) | 257, 405, 1094, 1698 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1363, 1436 |
| BsiSI | CCGG | 9 cut(s) | 39, 304, 322, 330, 956, 1106, 1176, 1217, 1395 |
| BslFI | GGGAC | 6 cut(s) | 200, 695, 1088, 1186, 1739, 1864 |
| BsmAI | GTCTC | 2 cut(s) | 263, 899 |
| BsmBI | CGTCTC | 2 cut(s) | 263, 899 |
| BsmFI | GGGAC | 6 cut(s) | 200, 695, 1088, 1186, 1739, 1864 |
| BsnI | GGCC | 9 cut(s) | 5, 390, 1309, 1400, 1716, 1739, 1781, 1901, 2018 |
| BsoBI | CYCGRG | 2 cut(s) | 1363, 1436 |
| Bsp120I | GGGCCC | 1 cut(s) | 1398 |
| Bsp1286I | GDGCHC | 8 cut(s) | 257, 405, 447, 500, 1094, 1402, 1632, 1698 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp19I | CCATGG | 1 cut(s) | 993 |
| Bsp68I | TCGCGA | 2 cut(s) | 828, 986 |
| BspANI | GGCC | 9 cut(s) | 5, 390, 1309, 1400, 1716, 1739, 1781, 1901, 2018 |
| BspCNI | CTCAG | 8 cut(s) | 651, 669, 1066, 1090, 1351, 1710, 1948, 1990 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspFNI | CGCG | 7 cut(s) | 335, 420, 828, 986, 1037, 1230, 1404 |
| BspPI | GGATC | 6 cut(s) | 49, 451, 568, 930, 1899, 1918 |
| BspQI | GCTCTTC | 2 cut(s) | 210, 602 |
| BspT107I | GGYRCC | 4 cut(s) | 442, 977, 1195, 1234 |
| BspTI | CTTAAG | 1 cut(s) | 1928 |
| BsrBI | CCGCTC | 6 cut(s) | 1126, 1476, 1552, 1690, 1831, 1843 |
| BsrFI | RCCGGY | 3 cut(s) | 303, 1175, 1216 |
| BsrI | ACTGG | 3 cut(s) | 383, 600, 701 |
| BssAI | RCCGGY | 3 cut(s) | 303, 1175, 1216 |
| BssNI | GRCGYC | 5 cut(s) | 9, 978, 1196, 1667, 1800 |
| BssSI | CACGAG | 1 cut(s) | 404 |
| BssT1I | CCWWGG | 2 cut(s) | 993, 1138 |
| Bst2BI | CACGAG | 1 cut(s) | 404 |
| Bst2UI | CCWGG | 5 cut(s) | 614, 1022, 1661, 1682, 1742 |
| Bst4CI | ACNGT | 5 cut(s) | 358, 568, 943, 1520, 1639 |
| Bst6I | CTCTTC | 4 cut(s) | 210, 602, 828, 1368 |
| BstACI | GRCGYC | 5 cut(s) | 9, 978, 1196, 1667, 1800 |
| BstAFI | CTTAAG | 1 cut(s) | 1928 |
| BstBAI | YACGTR | 1 cut(s) | 604 |
| BstDEI | CTNAG | 8 cut(s) | 638, 677, 1053, 1098, 1338, 1697, 1956, 1998 |
| BstDSI | CCRYGG | 4 cut(s) | 720, 973, 993, 1804 |
| BstEII | GGTNACC | 1 cut(s) | 1390 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1931 |
| BstF5I | GGATG | 2 cut(s) | 288, 795 |
| BstFNI | CGCG | 7 cut(s) | 335, 420, 828, 986, 1037, 1230, 1404 |
| BstH2I | RGCGCY | 5 cut(s) | 223, 527, 659, 981, 1199 |
| BstHHI | GCGC | 9 cut(s) | 62, 222, 335, 526, 658, 980, 1198, 1230, 1254 |
| BstMAI | GTCTC | 2 cut(s) | 263, 899 |
| BstMCI | CGRYCG | 2 cut(s) | 1593, 2019 |
| BstNI | CCWGG | 5 cut(s) | 614, 1022, 1661, 1682, 1742 |
| BstNSI | RCATGY | 2 cut(s) | 508, 1879 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 891 |
| BstPI | GGTNACC | 1 cut(s) | 1390 |
| BstSCI | CCNGG | 9 cut(s) | 328, 612, 955, 1020, 1104, 1394, 1659, 1680, 1740 |
| BstSFI | CTRYAG | 2 cut(s) | 146, 452 |
| BstSLI | GKGCMC | 5 cut(s) | 405, 447, 500, 1402, 1632 |
| BstUI | CGCG | 7 cut(s) | 335, 420, 828, 986, 1037, 1230, 1404 |
| BstV2I | GAAGAC | 1 cut(s) | 1064 |
| BstX2I | RGATCY | 3 cut(s) | 41, 456, 1923 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1142 |
| BstYI | RGATCY | 3 cut(s) | 41, 456, 1923 |
| BstZI | CGGCCG | 1 cut(s) | 2016 |
| Bsu36I | CCTNAGG | 1 cut(s) | 677 |
| BsuRI | GGCC | 9 cut(s) | 5, 390, 1309, 1400, 1716, 1739, 1781, 1901, 2018 |
| BtgI | CCRYGG | 4 cut(s) | 720, 973, 993, 1804 |
| BtgZI | GCGATG | 2 cut(s) | 463, 1803 |
| BtrI | CACGTC | 1 cut(s) | 1633 |
| BtsCI | GGATG | 2 cut(s) | 288, 795 |
| BtsI | GCAGTG | 2 cut(s) | 34, 116 |
| BtsIMutI | CAGTG | 3 cut(s) | 34, 116, 390 |
| BtuMI | TCGCGA | 2 cut(s) | 828, 986 |
| CaiI | CAGNNNCTG | 3 cut(s) | 460, 931, 1681 |
| CciNI | GCGGCCGC | 1 cut(s) | 2016 |
| CfoI | GCGC | 9 cut(s) | 62, 222, 335, 526, 658, 980, 1198, 1230, 1254 |
| Cfr10I | RCCGGY | 3 cut(s) | 303, 1175, 1216 |
| CseI | GACGC | 5 cut(s) | 197, 335, 1026, 1656, 1808 |
| Csp6I | GTAC | 7 cut(s) | 601, 694, 736, 939, 1033, 1326, 1470 |
| CviAII | CATG | 5 cut(s) | 505, 994, 1030, 1649, 1876 |
| CviQI | GTAC | 7 cut(s) | 601, 694, 736, 939, 1033, 1326, 1470 |
| DdeI | CTNAG | 8 cut(s) | 638, 677, 1053, 1098, 1338, 1697, 1956, 1998 |
| DinI | GGCGCC | 2 cut(s) | 979, 1197 |
| DriI | GACNNNNNGTC | 1 cut(s) | 688 |
| EaeI | YGGCCR | 3 cut(s) | 3, 1899, 2016 |
| EagI | CGGCCG | 1 cut(s) | 2016 |
| Eam1104I | CTCTTC | 4 cut(s) | 210, 602, 828, 1368 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 688 |
| EarI | CTCTTC | 4 cut(s) | 210, 602, 828, 1368 |
| EciI | GGCGGA | 5 cut(s) | 339, 883, 942, 1422, 1930 |
| Ecl136II | GAGCTC | 2 cut(s) | 1092, 1696 |
| EclXI | CGGCCG | 1 cut(s) | 2016 |
| Eco130I | CCWWGG | 2 cut(s) | 993, 1138 |
| Eco147I | AGGCCT | 1 cut(s) | 1309 |
| Eco24I | GRGCYC | 3 cut(s) | 1094, 1402, 1698 |
| Eco47I | GGWCC | 5 cut(s) | 747, 997, 1102, 1173, 1332 |
| Eco52I | CGGCCG | 1 cut(s) | 2016 |
| Eco53kI | GAGCTC | 2 cut(s) | 1092, 1696 |
| Eco57I | CTGAAG | 3 cut(s) | 66, 329, 1703 |
| Eco81I | CCTNAGG | 1 cut(s) | 677 |
| Eco88I | CYCGRG | 2 cut(s) | 1363, 1436 |
| Eco91I | GGTNACC | 1 cut(s) | 1390 |
| EcoICRI | GAGCTC | 2 cut(s) | 1092, 1696 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1931 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1102, 1398 |
| EcoO65I | GGTNACC | 1 cut(s) | 1390 |
| EcoRII | CCWGG | 5 cut(s) | 612, 1020, 1659, 1680, 1740 |
| EcoT14I | CCWWGG | 2 cut(s) | 993, 1138 |
| EcoT38I | GRGCYC | 3 cut(s) | 1094, 1402, 1698 |
| EgeI | GGCGCC | 2 cut(s) | 979, 1197 |
| EheI | GGCGCC | 2 cut(s) | 979, 1197 |
| ErhI | CCWWGG | 2 cut(s) | 993, 1138 |
| Esp3I | CGTCTC | 2 cut(s) | 263, 899 |
| FaeI | CATG | 5 cut(s) | 508, 997, 1033, 1652, 1879 |
| FaqI | GGGAC | 6 cut(s) | 200, 695, 1088, 1186, 1739, 1864 |
| FatI | CATG | 5 cut(s) | 504, 993, 1029, 1648, 1875 |
| FblI | GTMKAC | 1 cut(s) | 1589 |
| FokI | GGATG | 2 cut(s) | 295, 782 |
| FriOI | GRGCYC | 3 cut(s) | 1094, 1402, 1698 |
| FspBI | CTAG | 3 cut(s) | 131, 161, 177 |
| GlaI | GCGC | 9 cut(s) | 61, 221, 334, 525, 657, 979, 1197, 1229, 1253 |
| GsaI | CCCAGC | 1 cut(s) | 1559 |
| GsuI | CTGGAG | 2 cut(s) | 1341, 1886 |
| HaeII | RGCGCY | 5 cut(s) | 223, 527, 659, 981, 1199 |
| HaeIII | GGCC | 9 cut(s) | 5, 390, 1309, 1400, 1716, 1739, 1781, 1901, 2018 |
| HapII | CCGG | 9 cut(s) | 39, 304, 322, 330, 956, 1106, 1176, 1217, 1395 |
| HgaI | GACGC | 5 cut(s) | 197, 335, 1026, 1656, 1808 |
| HhaI | GCGC | 9 cut(s) | 62, 222, 335, 526, 658, 980, 1198, 1230, 1254 |
| Hin1I | GRCGYC | 5 cut(s) | 9, 978, 1196, 1667, 1800 |
| Hin1II | CATG | 5 cut(s) | 508, 997, 1033, 1652, 1879 |
| Hin6I | GCGC | 9 cut(s) | 60, 220, 333, 524, 656, 978, 1196, 1228, 1252 |
| HinP1I | GCGC | 9 cut(s) | 60, 220, 333, 524, 656, 978, 1196, 1228, 1252 |
| HincII | GTYRAC | 3 cut(s) | 265, 1355, 1590 |
| HindII | GTYRAC | 3 cut(s) | 265, 1355, 1590 |
| HpaII | CCGG | 9 cut(s) | 39, 304, 322, 330, 956, 1106, 1176, 1217, 1395 |
| HphI | GGTGA | 8 cut(s) | 349, 1078, 1157, 1261, 1532, 1532, 1627, 1849 |
| Hpy166II | GTNNAC | 8 cut(s) | 265, 403, 601, 634, 1069, 1328, 1355, 1590 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 784, 1056, 1099, 1722 |
| Hpy188III | TCNNGA | 6 cut(s) | 39, 460, 670, 827, 985, 1526 |
| Hpy8I | GTNNAC | 8 cut(s) | 265, 403, 601, 634, 1069, 1328, 1355, 1590 |
| Hpy99I | CGWCG | 7 cut(s) | 11, 358, 648, 769, 1297, 1520, 1770 |
| HpyAV | CCTTC | 8 cut(s) | 307, 361, 442, 551, 718, 991, 1727, 1729 |
| HpyCH4III | ACNGT | 5 cut(s) | 358, 568, 943, 1520, 1639 |
| HpyCH4IV | ACGT | 8 cut(s) | 9, 53, 603, 767, 1452, 1632, 1768, 1818 |
| HpyCH4V | TGCA | 3 cut(s) | 107, 211, 403 |
| HpyF3I | CTNAG | 8 cut(s) | 638, 677, 1053, 1098, 1338, 1697, 1956, 1998 |
| HpySE526I | ACGT | 8 cut(s) | 9, 53, 603, 767, 1452, 1632, 1768, 1818 |
| Hsp92I | GRCGYC | 5 cut(s) | 9, 978, 1196, 1667, 1800 |
| Hsp92II | CATG | 5 cut(s) | 508, 997, 1033, 1652, 1879 |
| HspAI | GCGC | 9 cut(s) | 60, 220, 333, 524, 656, 978, 1196, 1228, 1252 |
| KasI | GGCGCC | 2 cut(s) | 977, 1195 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| KroI | GCCGGC | 1 cut(s) | 1216 |
| KroNI | GCCGGC | 1 cut(s) | 1218 |
| LguI | GCTCTTC | 2 cut(s) | 210, 602 |
| LmnI | GCTCC | 8 cut(s) | 760, 1131, 1285, 1435, 1447, 1693, 1840, 1867 |
| LweI | GCATC | 2 cut(s) | 486, 1780 |
| MaeI | CTAG | 3 cut(s) | 131, 161, 177 |
| MaeII | ACGT | 8 cut(s) | 9, 53, 603, 767, 1452, 1632, 1768, 1818 |
| MaeIII | GTNAC | 6 cut(s) | 49, 427, 1145, 1267, 1390, 1633 |
| MbiI | CCGCTC | 6 cut(s) | 1126, 1476, 1552, 1690, 1831, 1843 |
| MboII | GAAGA | 8 cut(s) | 227, 619, 845, 1069, 1252, 1385, 1391, 1924 |
| MflI | RGATCY | 3 cut(s) | 41, 456, 1923 |
| MhlI | GDGCHC | 8 cut(s) | 257, 405, 447, 500, 1094, 1402, 1632, 1698 |
| MluCI | AATT | 3 cut(s) | 73, 774, 877 |
| MluI | ACGCGT | 1 cut(s) | 1035 |
| Mly113I | GGCGCC | 2 cut(s) | 978, 1196 |
| MlyI | GAGTC | 7 cut(s) | 77, 677, 817, 928, 1054, 1478, 1946 |
| MmeI | TCCRAC | 3 cut(s) | 762, 774, 1263 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MroNI | GCCGGC | 1 cut(s) | 1216 |
| MseI | TTAA | 2 cut(s) | 777, 1929 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1140 |
| MspA1I | CMGCKG | 9 cut(s) | 65, 246, 290, 398, 439, 1160, 1316, 1448, 1463 |
| MspCI | CTTAAG | 1 cut(s) | 1928 |
| MspI | CCGG | 9 cut(s) | 39, 304, 322, 330, 956, 1106, 1176, 1217, 1395 |
| MspR9I | CCNGG | 9 cut(s) | 330, 614, 957, 1022, 1106, 1396, 1661, 1682, 1742 |
| MvaI | CCWGG | 5 cut(s) | 614, 1022, 1661, 1682, 1742 |
| MvnI | CGCG | 7 cut(s) | 335, 420, 828, 986, 1037, 1230, 1404 |
| NaeI | GCCGGC | 1 cut(s) | 1218 |
| NarI | GGCGCC | 2 cut(s) | 978, 1196 |
| NciI | CCSGG | 4 cut(s) | 330, 957, 1106, 1396 |
| NcoI | CCATGG | 1 cut(s) | 993 |
| NgoMIV | GCCGGC | 1 cut(s) | 1216 |
| NlaIII | CATG | 5 cut(s) | 508, 997, 1033, 1652, 1879 |
| NmuCI | GTSAC | 5 cut(s) | 49, 427, 1145, 1267, 1633 |
| NotI | GCGGCCGC | 1 cut(s) | 2016 |
| NruI | TCGCGA | 2 cut(s) | 828, 986 |
| NspI | RCATGY | 2 cut(s) | 508, 1879 |
| OliI | CACNNNNGTG | 1 cut(s) | 1140 |
| PceI | AGGCCT | 1 cut(s) | 1309 |
| PciI | ACATGT | 2 cut(s) | 504, 1875 |
| PciSI | GCTCTTC | 2 cut(s) | 210, 602 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 92, 1301 |
| PdiI | GCCGGC | 1 cut(s) | 1218 |
| PfeI | GAWTC | 4 cut(s) | 35, 111, 1025, 1604 |
| PflFI | GACNNNGTC | 1 cut(s) | 191 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 507 |
| PfoI | TCCNGGA | 1 cut(s) | 1020 |
| PleI | GAGTC | 7 cut(s) | 77, 677, 817, 928, 1054, 1478, 1945 |
| PluTI | GGCGCC | 2 cut(s) | 981, 1199 |
| PpsI | GAGTC | 7 cut(s) | 77, 677, 817, 928, 1054, 1478, 1945 |
| Ppu21I | YACGTR | 1 cut(s) | 604 |
| PpuMI | RGGWCCY | 1 cut(s) | 1102 |
| PscI | ACATGT | 2 cut(s) | 504, 1875 |
| PshAI | GACNNNNGTC | 1 cut(s) | 891 |
| PsiI | TTATAA | 1 cut(s) | 773 |
| Psp124BI | GAGCTC | 2 cut(s) | 1094, 1698 |
| Psp1406I | AACGTT | 1 cut(s) | 1818 |
| Psp5II | RGGWCCY | 1 cut(s) | 1102 |
| Psp6I | CCWGG | 5 cut(s) | 612, 1020, 1659, 1680, 1740 |
| PspEI | GGTNACC | 1 cut(s) | 1390 |
| PspFI | CCCAGC | 1 cut(s) | 1555 |
| PspGI | CCWGG | 5 cut(s) | 612, 1020, 1659, 1680, 1740 |
| PspOMI | GGGCCC | 1 cut(s) | 1398 |
| PspPPI | RGGWCCY | 1 cut(s) | 1102 |
| PstNI | CAGNNNCTG | 3 cut(s) | 460, 931, 1681 |
| PsuI | RGATCY | 3 cut(s) | 41, 456, 1923 |
| PsyI | GACNNNGTC | 1 cut(s) | 191 |
| RruI | TCGCGA | 2 cut(s) | 828, 986 |
| RsaI | GTAC | 7 cut(s) | 602, 695, 737, 940, 1034, 1327, 1471 |
| RsaNI | GTAC | 7 cut(s) | 601, 694, 736, 939, 1033, 1326, 1470 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1140 |
| SacI | GAGCTC | 2 cut(s) | 1094, 1698 |
| SalI | GTCGAC | 1 cut(s) | 1588 |
| SapI | GCTCTTC | 2 cut(s) | 210, 602 |
| SaqAI | TTAA | 2 cut(s) | 777, 1929 |
| SchI | GAGTC | 7 cut(s) | 77, 677, 817, 928, 1054, 1478, 1946 |
| ScrFI | CCNGG | 9 cut(s) | 330, 614, 957, 1022, 1106, 1396, 1661, 1682, 1742 |
| SduI | GDGCHC | 8 cut(s) | 257, 405, 447, 500, 1094, 1402, 1632, 1698 |
| SfaNI | GCATC | 2 cut(s) | 486, 1780 |
| SfcI | CTRYAG | 2 cut(s) | 146, 452 |
| SfoI | GGCGCC | 2 cut(s) | 979, 1197 |
| SinI | GGWCC | 5 cut(s) | 747, 997, 1102, 1173, 1332 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1140 |
| SmlI | CTYRAG | 1 cut(s) | 1928 |
| SmoI | CTYRAG | 1 cut(s) | 1928 |
| Sse9I | AATT | 3 cut(s) | 73, 774, 877 |
| SseBI | AGGCCT | 1 cut(s) | 1309 |
| SspDI | GGCGCC | 2 cut(s) | 977, 1195 |
| SspMI | CTAG | 3 cut(s) | 131, 161, 177 |
| SstI | GAGCTC | 2 cut(s) | 1094, 1698 |
| StuI | AGGCCT | 1 cut(s) | 1309 |
| StyD4I | CCNGG | 9 cut(s) | 328, 612, 955, 1020, 1104, 1394, 1659, 1680, 1740 |
| StyI | CCWWGG | 2 cut(s) | 993, 1138 |
| TaaI | ACNGT | 5 cut(s) | 358, 568, 943, 1520, 1639 |
| TaiI | ACGT | 8 cut(s) | 12, 56, 606, 770, 1455, 1635, 1771, 1821 |
| TaqI | TCGA | 6 cut(s) | 23, 563, 669, 686, 1589, 1761 |
| TasI | AATT | 3 cut(s) | 73, 774, 877 |
| TfiI | GAWTC | 4 cut(s) | 35, 111, 1025, 1604 |
| Tru1I | TTAA | 2 cut(s) | 777, 1929 |
| Tru9I | TTAA | 2 cut(s) | 777, 1929 |
| TscAI | CASTG | 3 cut(s) | 34, 123, 390 |
| TseFI | GTSAC | 5 cut(s) | 49, 427, 1145, 1267, 1633 |
| Tsp45I | GTSAC | 5 cut(s) | 49, 427, 1145, 1267, 1633 |
| TspGWI | ACGGA | 3 cut(s) | 881, 1274, 1345 |
| TspRI | CASTG | 3 cut(s) | 34, 123, 390 |
| Tth111I | GACNNNGTC | 1 cut(s) | 191 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 507 |
| Vha464I | CTTAAG | 1 cut(s) | 1928 |
| VneI | GTGCAC | 1 cut(s) | 401 |
| VpaK11BI | GGWCC | 5 cut(s) | 747, 997, 1102, 1173, 1332 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1931 |
| XapI | RAATTY | 2 cut(s) | 73, 877 |
| XceI | RCATGY | 2 cut(s) | 508, 1879 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1136, 1279 |
| XmiI | GTMKAC | 1 cut(s) | 1589 |
| XspI | CTAG | 3 cut(s) | 131, 161, 177 |
| ZraI | GACGTC | 1 cut(s) | 10 |