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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 649 |
| AccBSI | CCGCTC | 2 cut(s) | 16, 181 |
| AccII | CGCG | 2 cut(s) | 501, 873 |
| AclWI | GGATC | 1 cut(s) | 193 |
| AcoI | YGGCCR | 1 cut(s) | 312 |
| AcsI | RAATTY | 1 cut(s) | 20 |
| AcuI | CTGAAG | 2 cut(s) | 88, 510 |
| AcvI | CACGTG | 1 cut(s) | 296 |
| AcyI | GRCGYC | 2 cut(s) | 158, 635 |
| AfaI | GTAC | 2 cut(s) | 703, 823 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 268, 321, 379, 424, 646, 775 |
| AgsI | TTSAA | 3 cut(s) | 521, 529, 722 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 346, 837 |
| AjiI | CACGTC | 1 cut(s) | 328 |
| AjnI | CCWGG | 5 cut(s) | 150, 171, 201, 437, 795 |
| AluBI | AGCT | 6 cut(s) | 46, 108, 304, 355, 488, 908 |
| AluI | AGCT | 6 cut(s) | 46, 108, 304, 355, 488, 908 |
| Alw21I | GWGCWC | 1 cut(s) | 730 |
| Alw26I | GTCTC | 3 cut(s) | 663, 738, 824 |
| AlwI | GGATC | 1 cut(s) | 193 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 172 |
| Ama87I | CYCGRG | 4 cut(s) | 644, 733, 810, 849 |
| AoxI | GGCC | 5 cut(s) | 58, 312, 579, 705, 801 |
| ApaI | GGGCCC | 1 cut(s) | 583 |
| ApeKI | GCWGC | 7 cut(s) | 43, 166, 284, 304, 392, 421, 566 |
| ApoI | RAATTY | 1 cut(s) | 20 |
| AspLEI | GCGC | 3 cut(s) | 503, 617, 875 |
| AspS9I | GGNCC | 5 cut(s) | 496, 579, 580, 706, 802 |
| AsuHPI | GGTGA | 3 cut(s) | 463, 479, 640 |
| AvaI | CYCGRG | 4 cut(s) | 644, 733, 810, 849 |
| AvaII | GGWCC | 1 cut(s) | 496 |
| BaeGI | GKGCMC | 1 cut(s) | 583 |
| BalI | TGGCCA | 1 cut(s) | 314 |
| BanI | GGYRCC | 1 cut(s) | 649 |
| BanII | GRGCYC | 1 cut(s) | 583 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 694, 726 |
| BbrPI | CACGTG | 1 cut(s) | 296 |
| BbsI | GAAGAC | 1 cut(s) | 578 |
| Bbv12I | GWGCWC | 1 cut(s) | 730 |
| BbvI | GCAGC | 7 cut(s) | 55, 178, 271, 291, 379, 433, 578 |
| BccI | CCATC | 1 cut(s) | 812 |
| BceAI | ACGGC | 3 cut(s) | 640, 720, 868 |
| BciT130I | CCWGG | 5 cut(s) | 152, 173, 203, 439, 797 |
| BciVI | GTATCC | 1 cut(s) | 268 |
| BcoDI | GTCTC | 3 cut(s) | 663, 738, 824 |
| BfaI | CTAG | 3 cut(s) | 47, 62, 584 |
| BfmI | CTRYAG | 2 cut(s) | 285, 419 |
| BfoI | RGCGCY | 1 cut(s) | 618 |
| BfuI | GTATCC | 1 cut(s) | 268 |
| Bme1390I | CCNGG | 5 cut(s) | 152, 173, 203, 439, 797 |
| Bme18I | GGWCC | 1 cut(s) | 496 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 346, 837 |
| BmeT110I | CYCGRG | 4 cut(s) | 644, 733, 810, 849 |
| BmgBI | CACGTC | 1 cut(s) | 328 |
| BmgT120I | GGNCC | 5 cut(s) | 496, 579, 580, 706, 802 |
| BmiI | GGNNCC | 5 cut(s) | 497, 580, 581, 651, 708 |
| BmrFI | CCNGG | 5 cut(s) | 152, 173, 203, 439, 797 |
| BmrI | ACTGGG | 3 cut(s) | 585, 634, 763 |
| BmsI | GCATC | 3 cut(s) | 271, 280, 588 |
| BmuI | ACTGGG | 3 cut(s) | 585, 634, 763 |
| BpiI | GAAGAC | 1 cut(s) | 578 |
| BpmI | CTGGAG | 2 cut(s) | 377, 398 |
| Bpu10I | CCTNAGC | 1 cut(s) | 396 |
| BpuEI | CTTGAG | 1 cut(s) | 230 |
| Bsa29I | ATCGAT | 1 cut(s) | 411 |
| BsaAI | YACGTR | 1 cut(s) | 296 |
| BsaBI | GATNNNNATC | 1 cut(s) | 413 |
| BsaHI | GRCGYC | 2 cut(s) | 158, 635 |
| BsaJI | CCNNGG | 4 cut(s) | 171, 202, 645, 850 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 268, 321, 379, 424, 646, 775 |
| Bse1I | ACTGG | 5 cut(s) | 94, 465, 580, 629, 769 |
| Bse8I | GATNNNNATC | 1 cut(s) | 413 |
| BseBI | CCWGG | 5 cut(s) | 152, 173, 203, 439, 797 |
| BseCI | ATCGAT | 1 cut(s) | 411 |
| BseDI | CCNNGG | 4 cut(s) | 171, 202, 645, 850 |
| BseGI | GGATG | 1 cut(s) | 877 |
| BseJI | GATNNNNATC | 1 cut(s) | 413 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 268, 321, 379, 424, 646, 775 |
| BseMII | CTCAG | 3 cut(s) | 202, 473, 674 |
| BseNI | ACTGG | 5 cut(s) | 94, 465, 580, 629, 769 |
| BseRI | GAGGAG | 2 cut(s) | 461, 750 |
| BseSI | GKGCMC | 1 cut(s) | 583 |
| BseXI | GCAGC | 7 cut(s) | 55, 178, 271, 291, 379, 433, 578 |
| BseYI | CCCAGC | 2 cut(s) | 639, 750 |
| Bsh1236I | CGCG | 2 cut(s) | 501, 873 |
| BshFI | GGCC | 5 cut(s) | 60, 314, 581, 707, 803 |
| BshNI | GGYRCC | 1 cut(s) | 649 |
| BshVI | ATCGAT | 1 cut(s) | 411 |
| BsiHKAI | GWGCWC | 1 cut(s) | 730 |
| BsiHKCI | CYCGRG | 4 cut(s) | 644, 733, 810, 849 |
| BslFI | GGGAC | 6 cut(s) | 338, 355, 509, 622, 671, 766 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 268, 321, 379, 424, 646, 775 |
| BsmAI | GTCTC | 3 cut(s) | 663, 738, 824 |
| BsmBI | CGTCTC | 1 cut(s) | 663 |
| BsmFI | GGGAC | 6 cut(s) | 338, 355, 509, 622, 671, 766 |
| BsmI | GAATGC | 2 cut(s) | 524, 556 |
| BsnI | GGCC | 5 cut(s) | 60, 314, 581, 707, 803 |
| BsoBI | CYCGRG | 4 cut(s) | 644, 733, 810, 849 |
| Bsp120I | GGGCCC | 1 cut(s) | 579 |
| Bsp1286I | GDGCHC | 2 cut(s) | 583, 730 |
| Bsp143I | GATC | 2 cut(s) | 198, 408 |
| BspANI | GGCC | 5 cut(s) | 60, 314, 581, 707, 803 |
| BspCNI | CTCAG | 3 cut(s) | 201, 474, 673 |
| BspDI | ATCGAT | 1 cut(s) | 411 |
| BspFNI | CGCG | 2 cut(s) | 501, 873 |
| BspLI | GGNNCC | 5 cut(s) | 497, 580, 581, 651, 708 |
| BspMAI | CTGCAG | 2 cut(s) | 289, 423 |
| BspPI | GGATC | 1 cut(s) | 193 |
| BspT107I | GGYRCC | 1 cut(s) | 649 |
| BsrBI | CCGCTC | 2 cut(s) | 16, 181 |
| BsrI | ACTGG | 5 cut(s) | 94, 465, 580, 629, 769 |
| BssECI | CCNNGG | 4 cut(s) | 171, 202, 645, 850 |
| BssMI | GATC | 2 cut(s) | 198, 408 |
| BssNI | GRCGYC | 2 cut(s) | 158, 635 |
| Bst2UI | CCWGG | 5 cut(s) | 152, 173, 203, 439, 797 |
| Bst4CI | ACNGT | 3 cut(s) | 11, 517, 534 |
| Bst6I | CTCTTC | 2 cut(s) | 189, 692 |
| BstACI | GRCGYC | 2 cut(s) | 158, 635 |
| BstBAI | YACGTR | 1 cut(s) | 296 |
| BstC8I | GCNNGC | 7 cut(s) | 41, 137, 302, 478, 675, 730, 891 |
| BstDEI | CTNAG | 5 cut(s) | 162, 188, 396, 482, 660 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 266, 377 |
| BstF5I | GGATG | 1 cut(s) | 877 |
| BstFNI | CGCG | 2 cut(s) | 501, 873 |
| BstH2I | RGCGCY | 1 cut(s) | 618 |
| BstHHI | GCGC | 3 cut(s) | 503, 617, 875 |
| BstKTI | GATC | 2 cut(s) | 201, 411 |
| BstMAI | GTCTC | 3 cut(s) | 663, 738, 824 |
| BstMBI | GATC | 2 cut(s) | 198, 408 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 290, 509, 649, 661, 670 |
| BstNI | CCWGG | 5 cut(s) | 152, 173, 203, 439, 797 |
| BstNSI | RCATGY | 1 cut(s) | 370 |
| BstSCI | CCNGG | 5 cut(s) | 150, 171, 201, 437, 795 |
| BstSFI | CTRYAG | 2 cut(s) | 285, 419 |
| BstSLI | GKGCMC | 1 cut(s) | 583 |
| BstUI | CGCG | 2 cut(s) | 501, 873 |
| BstV1I | GCAGC | 7 cut(s) | 55, 178, 271, 291, 379, 433, 578 |
| BstV2I | GAAGAC | 1 cut(s) | 578 |
| BstX2I | RGATCY | 1 cut(s) | 198 |
| BstYI | RGATCY | 1 cut(s) | 198 |
| Bsu15I | ATCGAT | 1 cut(s) | 411 |
| BsuI | GTATCC | 1 cut(s) | 268 |
| BsuRI | GGCC | 5 cut(s) | 60, 314, 581, 707, 803 |
| BsuTUI | ATCGAT | 1 cut(s) | 411 |
| BtgZI | GCGATG | 1 cut(s) | 569 |
| BtrI | CACGTC | 1 cut(s) | 328 |
| BtsCI | GGATG | 1 cut(s) | 877 |
| BtsIMutI | CAGTG | 2 cut(s) | 16, 513 |
| Cac8I | GCNNGC | 7 cut(s) | 41, 137, 302, 478, 675, 730, 891 |
| CaiI | CAGNNNCTG | 1 cut(s) | 172 |
| CfoI | GCGC | 3 cut(s) | 503, 617, 875 |
| Cfr13I | GGNCC | 5 cut(s) | 496, 579, 580, 706, 802 |
| ClaI | ATCGAT | 1 cut(s) | 411 |
| CseI | GACGC | 2 cut(s) | 147, 624 |
| Csp6I | GTAC | 2 cut(s) | 702, 822 |
| CviAII | CATG | 2 cut(s) | 344, 367 |
| CviQI | GTAC | 2 cut(s) | 702, 822 |
| DdeI | CTNAG | 5 cut(s) | 162, 188, 396, 482, 660 |
| DpnI | GATC | 2 cut(s) | 200, 410 |
| DpnII | GATC | 2 cut(s) | 198, 408 |
| DriI | GACNNNNNGTC | 2 cut(s) | 346, 837 |
| EaeI | YGGCCR | 1 cut(s) | 312 |
| Eam1104I | CTCTTC | 2 cut(s) | 189, 692 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 346, 837 |
| EarI | CTCTTC | 2 cut(s) | 189, 692 |
| EciI | GGCGGA | 4 cut(s) | 239, 287, 554, 870 |
| Eco24I | GRGCYC | 1 cut(s) | 583 |
| Eco32I | GATATC | 1 cut(s) | 415 |
| Eco47I | GGWCC | 1 cut(s) | 496 |
| Eco57I | CTGAAG | 2 cut(s) | 88, 510 |
| Eco72I | CACGTG | 1 cut(s) | 296 |
| Eco88I | CYCGRG | 4 cut(s) | 644, 733, 810, 849 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 266, 377 |
| EcoO109I | RGGNCCY | 2 cut(s) | 579, 580 |
| EcoRI | GAATTC | 1 cut(s) | 20 |
| EcoRII | CCWGG | 5 cut(s) | 150, 171, 201, 437, 795 |
| EcoRV | GATATC | 1 cut(s) | 415 |
| EcoT38I | GRGCYC | 1 cut(s) | 583 |
| Esp3I | CGTCTC | 1 cut(s) | 663 |
| FaeI | CATG | 2 cut(s) | 347, 370 |
| FaiI | YATR | 2 cut(s) | 345, 368 |
| FaqI | GGGAC | 6 cut(s) | 338, 355, 509, 622, 671, 766 |
| FatI | CATG | 2 cut(s) | 343, 366 |
| FauI | CCCGC | 7 cut(s) | 9, 58, 174, 315, 417, 485, 678 |
| FokI | GGATG | 1 cut(s) | 864 |
| FriOI | GRGCYC | 1 cut(s) | 583 |
| FspBI | CTAG | 3 cut(s) | 47, 62, 584 |
| GlaI | GCGC | 3 cut(s) | 502, 616, 874 |
| GsaI | CCCAGC | 2 cut(s) | 643, 754 |
| GsuI | CTGGAG | 2 cut(s) | 377, 398 |
| HaeII | RGCGCY | 1 cut(s) | 618 |
| HaeIII | GGCC | 5 cut(s) | 60, 314, 581, 707, 803 |
| HgaI | GACGC | 2 cut(s) | 147, 624 |
| HhaI | GCGC | 3 cut(s) | 503, 617, 875 |
| Hin1I | GRCGYC | 2 cut(s) | 158, 635 |
| Hin1II | CATG | 2 cut(s) | 347, 370 |
| Hin6I | GCGC | 3 cut(s) | 501, 615, 873 |
| HinP1I | GCGC | 3 cut(s) | 501, 615, 873 |
| HinfI | GANTC | 5 cut(s) | 428, 746, 757, 832, 838 |
| HphI | GGTGA | 3 cut(s) | 463, 479, 640 |
| Hpy188I | TCNGA | 3 cut(s) | 775, 837, 859 |
| Hpy188III | TCNNGA | 1 cut(s) | 209 |
| Hpy99I | CGWCG | 2 cut(s) | 694, 889 |
| HpyAV | CCTTC | 7 cut(s) | 112, 458, 485, 604, 625, 716, 720 |
| HpyCH4III | ACNGT | 3 cut(s) | 11, 517, 534 |
| HpyCH4IV | ACGT | 3 cut(s) | 295, 327, 591 |
| HpyCH4V | TGCA | 5 cut(s) | 139, 287, 293, 307, 421 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 290, 509, 649, 661, 670 |
| HpyF3I | CTNAG | 5 cut(s) | 162, 188, 396, 482, 660 |
| HpySE526I | ACGT | 3 cut(s) | 295, 327, 591 |
| Hsp92I | GRCGYC | 2 cut(s) | 158, 635 |
| Hsp92II | CATG | 2 cut(s) | 347, 370 |
| HspAI | GCGC | 3 cut(s) | 501, 615, 873 |
| Kzo9I | GATC | 2 cut(s) | 198, 408 |
| LmnI | GCTCC | 2 cut(s) | 81, 358 |
| Lsp1109I | GCAGC | 7 cut(s) | 55, 178, 271, 291, 379, 433, 578 |
| LweI | GCATC | 3 cut(s) | 271, 280, 588 |
| MaeI | CTAG | 3 cut(s) | 47, 62, 584 |
| MaeII | ACGT | 3 cut(s) | 295, 327, 591 |
| MaeIII | GTNAC | 1 cut(s) | 119 |
| MalI | GATC | 2 cut(s) | 200, 410 |
| MbiI | CCGCTC | 2 cut(s) | 16, 181 |
| MboI | GATC | 2 cut(s) | 198, 408 |
| MboII | GAAGA | 6 cut(s) | 206, 466, 583, 691, 709, 914 |
| MflI | RGATCY | 1 cut(s) | 198 |
| MhlI | GDGCHC | 2 cut(s) | 583, 730 |
| MlsI | TGGCCA | 1 cut(s) | 314 |
| MluCI | AATT | 2 cut(s) | 20, 239 |
| MluNI | TGGCCA | 1 cut(s) | 314 |
| MlyI | GAGTC | 5 cut(s) | 437, 740, 751, 826, 847 |
| MmeI | TCCRAC | 3 cut(s) | 225, 753, 866 |
| Mox20I | TGGCCA | 1 cut(s) | 314 |
| MscI | TGGCCA | 1 cut(s) | 314 |
| Msp20I | TGGCCA | 1 cut(s) | 314 |
| MspA1I | CMGCKG | 3 cut(s) | 322, 424, 754 |
| MspR9I | CCNGG | 5 cut(s) | 152, 173, 203, 439, 797 |
| Mva1269I | GAATGC | 2 cut(s) | 524, 556 |
| MvaI | CCWGG | 5 cut(s) | 152, 173, 203, 439, 797 |
| MvnI | CGCG | 2 cut(s) | 501, 873 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 290, 509, 649, 661, 670 |
| NdeII | GATC | 2 cut(s) | 198, 408 |
| NlaIII | CATG | 2 cut(s) | 347, 370 |
| NlaIV | GGNNCC | 5 cut(s) | 497, 580, 581, 651, 708 |
| NmeAIII | GCCGAG | 1 cut(s) | 89 |
| NmuCI | GTSAC | 1 cut(s) | 119 |
| NspI | RCATGY | 1 cut(s) | 370 |
| PaeR7I | CTCGAG | 1 cut(s) | 810 |
| PctI | GAATGC | 2 cut(s) | 524, 556 |
| PleI | GAGTC | 5 cut(s) | 436, 740, 751, 826, 846 |
| PmaCI | CACGTG | 1 cut(s) | 296 |
| PmlI | CACGTG | 1 cut(s) | 296 |
| PpsI | GAGTC | 5 cut(s) | 436, 740, 751, 826, 846 |
| Ppu21I | YACGTR | 1 cut(s) | 296 |
| Psp6I | CCWGG | 5 cut(s) | 150, 171, 201, 437, 795 |
| PspCI | CACGTG | 1 cut(s) | 296 |
| PspFI | CCCAGC | 2 cut(s) | 639, 750 |
| PspGI | CCWGG | 5 cut(s) | 150, 171, 201, 437, 795 |
| PspN4I | GGNNCC | 5 cut(s) | 497, 580, 581, 651, 708 |
| PspOMI | GGGCCC | 1 cut(s) | 579 |
| PspPI | GGNCC | 5 cut(s) | 496, 579, 580, 706, 802 |
| PspXI | VCTCGAGB | 1 cut(s) | 810 |
| PstI | CTGCAG | 2 cut(s) | 289, 423 |
| PstNI | CAGNNNCTG | 1 cut(s) | 172 |
| PsuI | RGATCY | 1 cut(s) | 198 |
| RsaI | GTAC | 2 cut(s) | 703, 823 |
| RsaNI | GTAC | 2 cut(s) | 702, 822 |
| Sau3AI | GATC | 2 cut(s) | 198, 408 |
| Sau96I | GGNCC | 5 cut(s) | 496, 579, 580, 706, 802 |
| SchI | GAGTC | 5 cut(s) | 437, 740, 751, 826, 847 |
| ScrFI | CCNGG | 5 cut(s) | 152, 173, 203, 439, 797 |
| SduI | GDGCHC | 2 cut(s) | 583, 730 |
| SfaNI | GCATC | 3 cut(s) | 271, 280, 588 |
| SfcI | CTRYAG | 2 cut(s) | 285, 419 |
| Sfr274I | CTCGAG | 1 cut(s) | 810 |
| SinI | GGWCC | 1 cut(s) | 496 |
| SlaI | CTCGAG | 1 cut(s) | 810 |
| SmlI | CTYRAG | 2 cut(s) | 209, 810 |
| SmoI | CTYRAG | 2 cut(s) | 209, 810 |
| Sse9I | AATT | 2 cut(s) | 20, 239 |
| SspMI | CTAG | 3 cut(s) | 47, 62, 584 |
| StyD4I | CCNGG | 5 cut(s) | 150, 171, 201, 437, 795 |
| TaaI | ACNGT | 3 cut(s) | 11, 517, 534 |
| TaiI | ACGT | 3 cut(s) | 298, 330, 594 |
| TaqI | TCGA | 2 cut(s) | 411, 811 |
| TaqII | GACCGA | 1 cut(s) | 107 |
| TasI | AATT | 2 cut(s) | 20, 239 |
| TauI | GCSGC | 7 cut(s) | 60, 158, 437, 506, 655, 803, 873 |
| TscAI | CASTG | 2 cut(s) | 16, 520 |
| TseFI | GTSAC | 1 cut(s) | 119 |
| TseI | GCWGC | 7 cut(s) | 43, 166, 284, 304, 392, 421, 566 |
| Tsp45I | GTSAC | 1 cut(s) | 119 |
| TspDTI | ATGAA | 1 cut(s) | 572 |
| TspRI | CASTG | 2 cut(s) | 16, 520 |
| VpaK11BI | GGWCC | 1 cut(s) | 496 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 266, 377 |
| XapI | RAATTY | 1 cut(s) | 20 |
| XceI | RCATGY | 1 cut(s) | 370 |
| XhoI | CTCGAG | 1 cut(s) | 810 |
| XspI | CTAG | 3 cut(s) | 47, 62, 584 |