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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 382 |
| AccB1I | GGYRCC | 1 cut(s) | 487 |
| AccBSI | CCGCTC | 3 cut(s) | 550, 577, 790 |
| AccII | CGCG | 2 cut(s) | 610, 879 |
| AclWI | GGATC | 1 cut(s) | 207 |
| AcoI | YGGCCR | 3 cut(s) | 189, 219, 904 |
| AcuI | CTGAAG | 1 cut(s) | 622 |
| AcyI | GRCGYC | 3 cut(s) | 488, 692, 825 |
| AfeI | AGCGCT | 1 cut(s) | 214 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 67, 106, 342, 571, 712 |
| AflIII | ACRYGT | 1 cut(s) | 877 |
| AgsI | TTSAA | 1 cut(s) | 278 |
| AjnI | CCWGG | 1 cut(s) | 861 |
| AleI | CACNNNNGTG | 1 cut(s) | 255 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 539, 571 |
| AluBI | AGCT | 5 cut(s) | 505, 642, 721, 775, 838 |
| AluI | AGCT | 5 cut(s) | 505, 642, 721, 775, 838 |
| Alw21I | GWGCWC | 1 cut(s) | 723 |
| Alw26I | GTCTC | 5 cut(s) | 77, 144, 390, 746, 886 |
| AlwI | GGATC | 1 cut(s) | 207 |
| Aor51HI | AGCGCT | 1 cut(s) | 214 |
| AoxI | GGCC | 9 cut(s) | 33, 57, 189, 219, 224, 426, 444, 645, 904 |
| ApaI | GGGCCC | 1 cut(s) | 430 |
| ApeKI | GCWGC | 2 cut(s) | 215, 700 |
| AspLEI | GCGC | 5 cut(s) | 215, 358, 372, 490, 612 |
| AsuC2I | CCSGG | 2 cut(s) | 8, 223 |
| AsuHPI | GGTGA | 4 cut(s) | 85, 130, 161, 337 |
| AsuII | TTCGAA | 1 cut(s) | 461 |
| AvaII | GGWCC | 5 cut(s) | 4, 180, 260, 333, 859 |
| BaeGI | GKGCMC | 1 cut(s) | 430 |
| BanI | GGYRCC | 1 cut(s) | 487 |
| BanII | GRGCYC | 2 cut(s) | 430, 723 |
| BbsI | GAAGAC | 1 cut(s) | 470 |
| Bbv12I | GWGCWC | 1 cut(s) | 723 |
| BbvI | GCAGC | 2 cut(s) | 202, 712 |
| BccI | CCATC | 3 cut(s) | 149, 573, 896 |
| BceAI | ACGGC | 5 cut(s) | 204, 393, 417, 479, 633 |
| BciT130I | CCWGG | 1 cut(s) | 863 |
| BcnI | CCSGG | 2 cut(s) | 8, 223 |
| BcoDI | GTCTC | 5 cut(s) | 77, 144, 390, 746, 886 |
| BfaI | CTAG | 1 cut(s) | 797 |
| BfmI | CTRYAG | 1 cut(s) | 165 |
| BfoI | RGCGCY | 4 cut(s) | 216, 359, 373, 491 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 452 |
| Bme1390I | CCNGG | 3 cut(s) | 8, 223, 863 |
| Bme18I | GGWCC | 5 cut(s) | 4, 180, 260, 333, 859 |
| BmrFI | CCNGG | 3 cut(s) | 8, 223, 863 |
| BmsI | GCATC | 3 cut(s) | 111, 117, 231 |
| BpiI | GAAGAC | 1 cut(s) | 470 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 494, 526 |
| BpmI | CTGGAG | 3 cut(s) | 380, 728, 884 |
| Bpu10I | CCTNAGC | 1 cut(s) | 722 |
| Bpu14I | TTCGAA | 1 cut(s) | 461 |
| BpuMI | CCSGG | 2 cut(s) | 8, 223 |
| BsaHI | GRCGYC | 3 cut(s) | 488, 692, 825 |
| BsaI | GGTCTC | 1 cut(s) | 746 |
| BsaJI | CCNNGG | 2 cut(s) | 45, 105 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 23, 53, 396, 426, 539, 569 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 67, 106, 342, 571, 712 |
| Bse118I | RCCGGY | 3 cut(s) | 191, 280, 827 |
| Bse1I | ACTGG | 3 cut(s) | 100, 136, 317 |
| BseBI | CCWGG | 1 cut(s) | 863 |
| BseDI | CCNNGG | 2 cut(s) | 45, 105 |
| BseGI | GGATG | 3 cut(s) | 160, 246, 907 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 67, 106, 342, 571, 712 |
| BseMII | CTCAG | 4 cut(s) | 72, 86, 372, 736 |
| BseNI | ACTGG | 3 cut(s) | 100, 136, 317 |
| BseSI | GKGCMC | 1 cut(s) | 430 |
| BseX3I | CGGCCG | 2 cut(s) | 189, 219 |
| BseXI | GCAGC | 2 cut(s) | 202, 712 |
| BseYI | CCCAGC | 4 cut(s) | 60, 341, 580, 920 |
| BsgI | GTGCAG | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 2 cut(s) | 610, 879 |
| Bsh1285I | CGRYCG | 2 cut(s) | 192, 222 |
| BshFI | GGCC | 9 cut(s) | 35, 59, 191, 221, 226, 428, 446, 647, 906 |
| BshNI | GGYRCC | 1 cut(s) | 487 |
| BsiEI | CGRYCG | 2 cut(s) | 192, 222 |
| BsiHKAI | GWGCWC | 1 cut(s) | 723 |
| BsiSI | CCGG | 7 cut(s) | 7, 113, 192, 222, 281, 373, 828 |
| BslFI | GGGAC | 2 cut(s) | 193, 872 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 67, 106, 342, 571, 712 |
| BsmAI | GTCTC | 5 cut(s) | 77, 144, 390, 746, 886 |
| BsmBI | CGTCTC | 2 cut(s) | 77, 886 |
| BsmFI | GGGAC | 2 cut(s) | 193, 872 |
| BsnI | GGCC | 9 cut(s) | 35, 59, 191, 221, 226, 428, 446, 647, 906 |
| Bso31I | GGTCTC | 1 cut(s) | 746 |
| Bsp119I | TTCGAA | 1 cut(s) | 461 |
| Bsp120I | GGGCCC | 1 cut(s) | 426 |
| Bsp1286I | GDGCHC | 2 cut(s) | 430, 723 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspANI | GGCC | 9 cut(s) | 35, 59, 191, 221, 226, 428, 446, 647, 906 |
| BspCNI | CTCAG | 4 cut(s) | 73, 87, 373, 735 |
| BspFNI | CGCG | 2 cut(s) | 610, 879 |
| BspPI | GGATC | 1 cut(s) | 207 |
| BspQI | GCTCTTC | 1 cut(s) | 711 |
| BspT104I | TTCGAA | 1 cut(s) | 461 |
| BspT107I | GGYRCC | 1 cut(s) | 487 |
| BspTNI | GGTCTC | 1 cut(s) | 746 |
| BsrBI | CCGCTC | 3 cut(s) | 550, 577, 790 |
| BsrFI | RCCGGY | 3 cut(s) | 191, 280, 827 |
| BsrI | ACTGG | 3 cut(s) | 100, 136, 317 |
| BssAI | RCCGGY | 3 cut(s) | 191, 280, 827 |
| BssECI | CCNNGG | 2 cut(s) | 45, 105 |
| BssMI | GATC | 1 cut(s) | 199 |
| BssNI | GRCGYC | 3 cut(s) | 488, 692, 825 |
| Bst2UI | CCWGG | 1 cut(s) | 863 |
| Bst4CI | ACNGT | 3 cut(s) | 70, 169, 531 |
| Bst6I | CTCTTC | 3 cut(s) | 393, 566, 711 |
| BstACI | GRCGYC | 3 cut(s) | 488, 692, 825 |
| BstBI | TTCGAA | 1 cut(s) | 461 |
| BstDEI | CTNAG | 4 cut(s) | 81, 95, 381, 722 |
| BstF5I | GGATG | 3 cut(s) | 160, 246, 907 |
| BstFNI | CGCG | 2 cut(s) | 610, 879 |
| BstH2I | RGCGCY | 4 cut(s) | 216, 359, 373, 491 |
| BstHHI | GCGC | 5 cut(s) | 215, 358, 372, 490, 612 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMAI | GTCTC | 5 cut(s) | 77, 144, 390, 746, 886 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMCI | CGRYCG | 2 cut(s) | 192, 222 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 41, 130, 169, 452, 524, 609 |
| BstNI | CCWGG | 1 cut(s) | 863 |
| BstSCI | CCNGG | 3 cut(s) | 6, 221, 861 |
| BstSFI | CTRYAG | 1 cut(s) | 165 |
| BstSLI | GKGCMC | 1 cut(s) | 430 |
| BstUI | CGCG | 2 cut(s) | 610, 879 |
| BstV1I | GCAGC | 2 cut(s) | 202, 712 |
| BstV2I | GAAGAC | 1 cut(s) | 470 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 257 |
| BstZI | CGGCCG | 2 cut(s) | 189, 219 |
| BsuRI | GGCC | 9 cut(s) | 35, 59, 191, 221, 226, 428, 446, 647, 906 |
| BtsCI | GGATG | 3 cut(s) | 160, 246, 907 |
| BtsIMutI | CAGTG | 3 cut(s) | 174, 324, 505 |
| CfoI | GCGC | 5 cut(s) | 215, 358, 372, 490, 612 |
| Cfr10I | RCCGGY | 3 cut(s) | 191, 280, 827 |
| CseI | GACGC | 3 cut(s) | 681, 833, 868 |
| CviAII | CATG | 2 cut(s) | 37, 674 |
| DdeI | CTNAG | 4 cut(s) | 81, 95, 381, 722 |
| DinI | GGCGCC | 1 cut(s) | 489 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 382 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 382 |
| EaeI | YGGCCR | 3 cut(s) | 189, 219, 904 |
| EagI | CGGCCG | 2 cut(s) | 189, 219 |
| Eam1104I | CTCTTC | 3 cut(s) | 393, 566, 711 |
| EarI | CTCTTC | 3 cut(s) | 393, 566, 711 |
| EciI | GGCGGA | 5 cut(s) | 26, 299, 773, 794, 821 |
| Ecl136II | GAGCTC | 1 cut(s) | 721 |
| EclXI | CGGCCG | 2 cut(s) | 189, 219 |
| Eco24I | GRGCYC | 2 cut(s) | 430, 723 |
| Eco31I | GGTCTC | 1 cut(s) | 746 |
| Eco47I | GGWCC | 5 cut(s) | 4, 180, 260, 333, 859 |
| Eco47III | AGCGCT | 1 cut(s) | 214 |
| Eco52I | CGGCCG | 2 cut(s) | 189, 219 |
| Eco53kI | GAGCTC | 1 cut(s) | 721 |
| Eco57I | CTGAAG | 1 cut(s) | 622 |
| EcoICRI | GAGCTC | 1 cut(s) | 721 |
| EcoO109I | RGGNCCY | 3 cut(s) | 180, 426, 859 |
| EcoRII | CCWGG | 1 cut(s) | 861 |
| EcoT38I | GRGCYC | 2 cut(s) | 430, 723 |
| EgeI | GGCGCC | 1 cut(s) | 489 |
| EheI | GGCGCC | 1 cut(s) | 489 |
| Esp3I | CGTCTC | 2 cut(s) | 77, 886 |
| FaeI | CATG | 2 cut(s) | 40, 677 |
| FaiI | YATR | 9 cut(s) | 38, 42, 525, 536, 571, 605, 675, 680, 819 |
| FaqI | GGGAC | 2 cut(s) | 193, 872 |
| FatI | CATG | 2 cut(s) | 36, 673 |
| FauI | CCCGC | 9 cut(s) | 169, 188, 437, 499, 543, 592, 658, 783, 849 |
| FokI | GGATG | 3 cut(s) | 167, 253, 914 |
| FriOI | GRGCYC | 2 cut(s) | 430, 723 |
| FspBI | CTAG | 1 cut(s) | 797 |
| GlaI | GCGC | 5 cut(s) | 214, 357, 371, 489, 611 |
| GsaI | CCCAGC | 4 cut(s) | 64, 345, 584, 924 |
| GsuI | CTGGAG | 3 cut(s) | 380, 728, 884 |
| HaeII | RGCGCY | 4 cut(s) | 216, 359, 373, 491 |
| HaeIII | GGCC | 9 cut(s) | 35, 59, 191, 221, 226, 428, 446, 647, 906 |
| HapII | CCGG | 7 cut(s) | 7, 113, 192, 222, 281, 373, 828 |
| HgaI | GACGC | 3 cut(s) | 681, 833, 868 |
| HhaI | GCGC | 5 cut(s) | 215, 358, 372, 490, 612 |
| Hin1I | GRCGYC | 3 cut(s) | 488, 692, 825 |
| Hin1II | CATG | 2 cut(s) | 40, 677 |
| Hin6I | GCGC | 5 cut(s) | 213, 356, 370, 488, 610 |
| HinP1I | GCGC | 5 cut(s) | 213, 356, 370, 488, 610 |
| HindIII | AAGCTT | 1 cut(s) | 836 |
| HinfI | GANTC | 2 cut(s) | 383, 509 |
| HpaII | CCGG | 7 cut(s) | 7, 113, 192, 222, 281, 373, 828 |
| HphI | GGTGA | 4 cut(s) | 85, 130, 161, 337 |
| Hpy166II | GTNNAC | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 5 cut(s) | 96, 106, 204, 438, 737 |
| Hpy188III | TCNNGA | 3 cut(s) | 298, 389, 745 |
| Hpy8I | GTNNAC | 1 cut(s) | 76 |
| Hpy99I | CGWCG | 2 cut(s) | 619, 697 |
| HpyAV | CCTTC | 5 cut(s) | 226, 436, 468, 536, 646 |
| HpyCH4III | ACNGT | 3 cut(s) | 70, 169, 531 |
| HpyCH4IV | ACGT | 1 cut(s) | 86 |
| HpyCH4V | TGCA | 2 cut(s) | 172, 527 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 41, 130, 169, 452, 524, 609 |
| HpyF3I | CTNAG | 4 cut(s) | 81, 95, 381, 722 |
| HpySE526I | ACGT | 1 cut(s) | 86 |
| Hsp92I | GRCGYC | 3 cut(s) | 488, 692, 825 |
| Hsp92II | CATG | 2 cut(s) | 40, 677 |
| HspAI | GCGC | 5 cut(s) | 213, 356, 370, 488, 610 |
| KasI | GGCGCC | 1 cut(s) | 487 |
| KflI | GGGWCCC | 1 cut(s) | 180 |
| KroI | GCCGGC | 2 cut(s) | 191, 827 |
| KroNI | GCCGGC | 2 cut(s) | 193, 829 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| LguI | GCTCTTC | 1 cut(s) | 711 |
| LmnI | GCTCC | 4 cut(s) | 460, 547, 574, 892 |
| Lsp1109I | GCAGC | 2 cut(s) | 202, 712 |
| LweI | GCATC | 3 cut(s) | 111, 117, 231 |
| MaeI | CTAG | 1 cut(s) | 797 |
| MaeII | ACGT | 1 cut(s) | 86 |
| MaeIII | GTNAC | 3 cut(s) | 298, 325, 812 |
| MalI | GATC | 1 cut(s) | 201 |
| MbiI | CCGCTC | 3 cut(s) | 550, 577, 790 |
| MboI | GATC | 1 cut(s) | 199 |
| MboII | GAAGA | 7 cut(s) | 299, 410, 451, 475, 553, 728, 740 |
| MfeI | CAATTG | 1 cut(s) | 621 |
| MhlI | GDGCHC | 2 cut(s) | 430, 723 |
| MluCI | AATT | 3 cut(s) | 22, 621, 708 |
| MluI | ACGCGT | 1 cut(s) | 877 |
| Mly113I | GGCGCC | 1 cut(s) | 488 |
| MlyI | GAGTC | 2 cut(s) | 392, 503 |
| MmeI | TCCRAC | 1 cut(s) | 870 |
| MreI | CGCCGGCG | 1 cut(s) | 827 |
| MroNI | GCCGGC | 2 cut(s) | 191, 827 |
| MseI | TTAA | 1 cut(s) | 840 |
| MslI | CAYNNNNRTG | 2 cut(s) | 147, 255 |
| MspA1I | CMGCKG | 1 cut(s) | 341 |
| MspI | CCGG | 7 cut(s) | 7, 113, 192, 222, 281, 373, 828 |
| MspR9I | CCNGG | 3 cut(s) | 8, 223, 863 |
| MunI | CAATTG | 1 cut(s) | 621 |
| MvaI | CCWGG | 1 cut(s) | 863 |
| MvnI | CGCG | 2 cut(s) | 610, 879 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 41, 130, 169, 452, 524, 609 |
| NaeI | GCCGGC | 2 cut(s) | 193, 829 |
| NarI | GGCGCC | 1 cut(s) | 488 |
| NciI | CCSGG | 2 cut(s) | 8, 223 |
| NdeII | GATC | 1 cut(s) | 199 |
| NgoMIV | GCCGGC | 2 cut(s) | 191, 827 |
| NlaIII | CATG | 2 cut(s) | 40, 677 |
| NmeAIII | GCCGAG | 3 cut(s) | 70, 544, 623 |
| NmuCI | GTSAC | 3 cut(s) | 298, 325, 812 |
| NspV | TTCGAA | 1 cut(s) | 461 |
| OliI | CACNNNNGTG | 1 cut(s) | 255 |
| PciSI | GCTCTTC | 1 cut(s) | 711 |
| PdiI | GCCGGC | 2 cut(s) | 193, 829 |
| PleI | GAGTC | 2 cut(s) | 391, 503 |
| PluTI | GGCGCC | 1 cut(s) | 491 |
| PpsI | GAGTC | 2 cut(s) | 391, 503 |
| PpuMI | RGGWCCY | 2 cut(s) | 180, 859 |
| Psp124BI | GAGCTC | 1 cut(s) | 723 |
| Psp5II | RGGWCCY | 2 cut(s) | 180, 859 |
| Psp6I | CCWGG | 1 cut(s) | 861 |
| PspFI | CCCAGC | 4 cut(s) | 60, 341, 580, 920 |
| PspGI | CCWGG | 1 cut(s) | 861 |
| PspOMI | GGGCCC | 1 cut(s) | 426 |
| PspPPI | RGGWCCY | 2 cut(s) | 180, 859 |
| RseI | CAYNNNNRTG | 2 cut(s) | 147, 255 |
| SacI | GAGCTC | 1 cut(s) | 723 |
| SapI | GCTCTTC | 1 cut(s) | 711 |
| SaqAI | TTAA | 1 cut(s) | 840 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| SchI | GAGTC | 2 cut(s) | 392, 503 |
| ScrFI | CCNGG | 3 cut(s) | 8, 223, 863 |
| SduI | GDGCHC | 2 cut(s) | 430, 723 |
| SfaNI | GCATC | 3 cut(s) | 111, 117, 231 |
| SfcI | CTRYAG | 1 cut(s) | 165 |
| SfoI | GGCGCC | 1 cut(s) | 489 |
| SfuI | TTCGAA | 1 cut(s) | 461 |
| SgrAI | CRCCGGYG | 1 cut(s) | 827 |
| SinI | GGWCC | 5 cut(s) | 4, 180, 260, 333, 859 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 147, 255 |
| Sse9I | AATT | 3 cut(s) | 22, 621, 708 |
| SspDI | GGCGCC | 1 cut(s) | 487 |
| SspMI | CTAG | 1 cut(s) | 797 |
| SstI | GAGCTC | 1 cut(s) | 723 |
| StyD4I | CCNGG | 3 cut(s) | 6, 221, 861 |
| TaaI | ACNGT | 3 cut(s) | 70, 169, 531 |
| TaiI | ACGT | 1 cut(s) | 89 |
| TaqI | TCGA | 2 cut(s) | 461, 695 |
| TasI | AATT | 3 cut(s) | 22, 621, 708 |
| Tru1I | TTAA | 1 cut(s) | 840 |
| Tru9I | TTAA | 1 cut(s) | 840 |
| TscAI | CASTG | 3 cut(s) | 174, 324, 505 |
| TseFI | GTSAC | 3 cut(s) | 298, 325, 812 |
| TseI | GCWGC | 2 cut(s) | 215, 700 |
| Tsp45I | GTSAC | 3 cut(s) | 298, 325, 812 |
| TspDTI | ATGAA | 2 cut(s) | 888, 927 |
| TspRI | CASTG | 3 cut(s) | 174, 324, 505 |
| VpaK11BI | GGWCC | 5 cut(s) | 4, 180, 260, 333, 859 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 143, 234 |
| XspI | CTAG | 1 cut(s) | 797 |