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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 443 |
| Acc65I | GGTACC | 1 cut(s) | 881 |
| AccB1I | GGYRCC | 5 cut(s) | 37, 416, 842, 881, 1407 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1620 |
| AccBSI | CCGCTC | 4 cut(s) | 1140, 1405, 1426, 1685 |
| AccI | GTMKAC | 1 cut(s) | 1163 |
| AccII | CGCG | 8 cut(s) | 564, 658, 723, 816, 828, 877, 918, 992 |
| AclWI | GGATC | 3 cut(s) | 112, 1473, 1492 |
| AcoI | YGGCCR | 2 cut(s) | 1473, 1667 |
| AcuI | CTGAAG | 3 cut(s) | 870, 1171, 1487 |
| AcyI | GRCGYC | 1 cut(s) | 843 |
| AfaI | GTAC | 8 cut(s) | 221, 391, 536, 883, 915, 926, 1059, 1681 |
| AfeI | AGCGCT | 1 cut(s) | 466 |
| AflIII | ACRYGT | 2 cut(s) | 656, 1449 |
| AgsI | TTSAA | 2 cut(s) | 706, 1724 |
| AjiI | CACGTC | 2 cut(s) | 1041, 1207 |
| AjnI | CCWGG | 6 cut(s) | 741, 1233, 1254, 1314, 1410, 1711 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1103, 1135 |
| Alw21I | GWGCWC | 3 cut(s) | 863, 1272, 1666 |
| Alw26I | GTCTC | 3 cut(s) | 292, 620, 662 |
| AlwI | GGATC | 3 cut(s) | 112, 1473, 1492 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 107, 1255 |
| Ama87I | CYCGRG | 1 cut(s) | 1735 |
| Aor51HI | AGCGCT | 1 cut(s) | 466 |
| AoxI | GGCC | 7 cut(s) | 747, 986, 1288, 1311, 1473, 1579, 1667 |
| ApaI | GGGCCC | 2 cut(s) | 990, 1583 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 924, 956 |
| Asp718I | GGTACC | 1 cut(s) | 881 |
| AspLEI | GCGC | 9 cut(s) | 377, 467, 725, 775, 808, 828, 845, 877, 1090 |
| AspS9I | GGNCC | 9 cut(s) | 718, 790, 820, 986, 987, 1288, 1312, 1579, 1580 |
| AsuC2I | CCSGG | 7 cut(s) | 333, 357, 625, 678, 763, 984, 1274 |
| AsuHPI | GGTGA | 6 cut(s) | 280, 972, 1120, 1120, 1201, 1562 |
| AvaI | CYCGRG | 1 cut(s) | 1735 |
| AvaII | GGWCC | 3 cut(s) | 718, 790, 820 |
| AxyI | CCTNAGG | 1 cut(s) | 1025 |
| BaeGI | GKGCMC | 3 cut(s) | 990, 1206, 1583 |
| BanI | GGYRCC | 5 cut(s) | 37, 416, 842, 881, 1407 |
| BanII | GRGCYC | 7 cut(s) | 308, 863, 990, 1272, 1583, 1613, 1666 |
| BauI | CACGAG | 1 cut(s) | 546 |
| BbsI | GAAGAC | 3 cut(s) | 20, 437, 484 |
| Bbv12I | GWGCWC | 3 cut(s) | 863, 1272, 1666 |
| BccI | CCATC | 6 cut(s) | 169, 223, 1099, 1568, 1622, 1660 |
| BceAI | ACGGC | 4 cut(s) | 404, 647, 678, 923 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 301, 325, 335, 349, 359, 383 |
| BciT130I | CCWGG | 6 cut(s) | 743, 1235, 1256, 1316, 1412, 1713 |
| BcnI | CCSGG | 7 cut(s) | 333, 357, 625, 678, 763, 984, 1274 |
| BcoDI | GTCTC | 3 cut(s) | 292, 620, 662 |
| BfaI | CTAG | 2 cut(s) | 279, 1544 |
| BfmI | CTRYAG | 6 cut(s) | 69, 108, 223, 1046, 1292, 1598 |
| BfoI | RGCGCY | 4 cut(s) | 378, 468, 809, 846 |
| BfuAI | ACCTGC | 1 cut(s) | 443 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1526 |
| BlpI | GCTNAGC | 1 cut(s) | 809 |
| Bme18I | GGWCC | 3 cut(s) | 718, 790, 820 |
| BmeT110I | CYCGRG | 1 cut(s) | 1735 |
| BmgBI | CACGTC | 2 cut(s) | 1041, 1207 |
| BmgT120I | GGNCC | 9 cut(s) | 718, 790, 820, 986, 987, 1288, 1312, 1579, 1580 |
| BmrI | ACTGGG | 1 cut(s) | 1630 |
| BmsI | GCATC | 8 cut(s) | 65, 283, 582, 1250, 1354, 1449, 1584, 1626 |
| BmuI | ACTGGG | 1 cut(s) | 1630 |
| BoxI | GACNNNNGTC | 2 cut(s) | 612, 1169 |
| BpiI | GAAGAC | 3 cut(s) | 20, 437, 484 |
| BpmI | CTGGAG | 5 cut(s) | 764, 788, 929, 1433, 1460 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1479 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 809 |
| BpuMI | CCSGG | 7 cut(s) | 333, 357, 625, 678, 763, 984, 1274 |
| BsaHI | GRCGYC | 1 cut(s) | 843 |
| BsaJI | CCNNGG | 6 cut(s) | 814, 983, 1254, 1314, 1378, 1711 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 737, 767 |
| Bse118I | RCCGGY | 2 cut(s) | 822, 1639 |
| Bse1I | ACTGG | 1 cut(s) | 1625 |
| Bse21I | CCTNAGG | 1 cut(s) | 1025 |
| Bse3DI | GCAATG | 1 cut(s) | 720 |
| BseBI | CCWGG | 6 cut(s) | 743, 1235, 1256, 1316, 1412, 1713 |
| BseDI | CCNNGG | 6 cut(s) | 814, 983, 1254, 1314, 1378, 1711 |
| BseGI | GGATG | 3 cut(s) | 180, 274, 1241 |
| BseMI | GCAATG | 1 cut(s) | 720 |
| BseMII | CTCAG | 5 cut(s) | 245, 800, 1016, 1082, 1521 |
| BseNI | ACTGG | 1 cut(s) | 1625 |
| BseSI | GKGCMC | 3 cut(s) | 990, 1206, 1583 |
| BseYI | CCCAGC | 1 cut(s) | 1143 |
| BsgI | GTGCAG | 1 cut(s) | 1667 |
| Bsh1236I | CGCG | 8 cut(s) | 564, 658, 723, 816, 828, 877, 918, 992 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1163, 1644 |
| BshFI | GGCC | 7 cut(s) | 749, 988, 1290, 1313, 1475, 1581, 1669 |
| BshNI | GGYRCC | 5 cut(s) | 37, 416, 842, 881, 1407 |
| BsiEI | CGRYCG | 2 cut(s) | 1163, 1644 |
| BsiHKAI | GWGCWC | 3 cut(s) | 863, 1272, 1666 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1735 |
| BslFI | GGGAC | 4 cut(s) | 337, 833, 1313, 1438 |
| BsmAI | GTCTC | 3 cut(s) | 292, 620, 662 |
| BsmBI | CGTCTC | 2 cut(s) | 292, 620 |
| BsmFI | GGGAC | 4 cut(s) | 337, 833, 1313, 1438 |
| BsnI | GGCC | 7 cut(s) | 749, 988, 1290, 1313, 1475, 1581, 1669 |
| BsoBI | CYCGRG | 1 cut(s) | 1735 |
| Bsp120I | GGGCCC | 2 cut(s) | 986, 1579 |
| Bsp1286I | GDGCHC | 8 cut(s) | 308, 863, 990, 1206, 1272, 1583, 1613, 1666 |
| Bsp143I | GATC | 4 cut(s) | 117, 1465, 1497, 1533 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 809 |
| BspANI | GGCC | 7 cut(s) | 749, 988, 1290, 1313, 1475, 1581, 1669 |
| BspCNI | CTCAG | 5 cut(s) | 246, 801, 1017, 1083, 1522 |
| BspFNI | CGCG | 8 cut(s) | 564, 658, 723, 816, 828, 877, 918, 992 |
| BspHI | TCATGA | 1 cut(s) | 1222 |
| BspMAI | CTGCAG | 4 cut(s) | 73, 112, 227, 1602 |
| BspMI | ACCTGC | 1 cut(s) | 443 |
| BspPI | GGATC | 3 cut(s) | 112, 1473, 1492 |
| BspT107I | GGYRCC | 5 cut(s) | 37, 416, 842, 881, 1407 |
| BsrBI | CCGCTC | 4 cut(s) | 1140, 1405, 1426, 1685 |
| BsrDI | GCAATG | 1 cut(s) | 720 |
| BsrFI | RCCGGY | 2 cut(s) | 822, 1639 |
| BsrI | ACTGG | 1 cut(s) | 1625 |
| BssAI | RCCGGY | 2 cut(s) | 822, 1639 |
| BssECI | CCNNGG | 6 cut(s) | 814, 983, 1254, 1314, 1378, 1711 |
| BssMI | GATC | 4 cut(s) | 117, 1465, 1497, 1533 |
| BssNI | GRCGYC | 1 cut(s) | 843 |
| BssSI | CACGAG | 1 cut(s) | 546 |
| Bst2BI | CACGAG | 1 cut(s) | 546 |
| Bst2UI | CCWGG | 6 cut(s) | 743, 1235, 1256, 1316, 1412, 1713 |
| Bst4CI | ACNGT | 3 cut(s) | 103, 924, 1213 |
| Bst6I | CTCTTC | 3 cut(s) | 549, 956, 962 |
| BstACI | GRCGYC | 1 cut(s) | 843 |
| BstDEI | CTNAG | 6 cut(s) | 254, 809, 1025, 1091, 1479, 1530 |
| BstDSI | CCRYGG | 2 cut(s) | 814, 1378 |
| BstEII | GGTNACC | 1 cut(s) | 978 |
| BstF5I | GGATG | 3 cut(s) | 180, 274, 1241 |
| BstFNI | CGCG | 8 cut(s) | 564, 658, 723, 816, 828, 877, 918, 992 |
| BstH2I | RGCGCY | 4 cut(s) | 378, 468, 809, 846 |
| BstHHI | GCGC | 9 cut(s) | 377, 467, 725, 775, 808, 828, 845, 877, 1090 |
| BstKTI | GATC | 4 cut(s) | 120, 1468, 1500, 1536 |
| BstMAI | GTCTC | 3 cut(s) | 292, 620, 662 |
| BstMBI | GATC | 4 cut(s) | 117, 1465, 1497, 1533 |
| BstMCI | CGRYCG | 2 cut(s) | 1163, 1644 |
| BstNI | CCWGG | 6 cut(s) | 743, 1235, 1256, 1316, 1412, 1713 |
| BstNSI | RCATGY | 4 cut(s) | 316, 340, 390, 1453 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 612, 1169 |
| BstPI | GGTNACC | 1 cut(s) | 978 |
| BstSFI | CTRYAG | 6 cut(s) | 69, 108, 223, 1046, 1292, 1598 |
| BstSLI | GKGCMC | 3 cut(s) | 990, 1206, 1583 |
| BstUI | CGCG | 8 cut(s) | 564, 658, 723, 816, 828, 877, 918, 992 |
| BstV2I | GAAGAC | 3 cut(s) | 20, 437, 484 |
| BstX2I | RGATCY | 2 cut(s) | 117, 1497 |
| BstYI | RGATCY | 2 cut(s) | 117, 1497 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1025 |
| BsuRI | GGCC | 7 cut(s) | 749, 988, 1290, 1313, 1475, 1581, 1669 |
| BtgI | CCRYGG | 2 cut(s) | 814, 1378 |
| BtgZI | GCGATG | 1 cut(s) | 1377 |
| BtrI | CACGTC | 2 cut(s) | 1041, 1207 |
| BtsCI | GGATG | 3 cut(s) | 180, 274, 1241 |
| BtsI | GCAGTG | 2 cut(s) | 1689, 1701 |
| BtsIMutI | CAGTG | 2 cut(s) | 1689, 1701 |
| BveI | ACCTGC | 1 cut(s) | 443 |
| CaiI | CAGNNNCTG | 2 cut(s) | 107, 1255 |
| CciI | TCATGA | 1 cut(s) | 1222 |
| CfoI | GCGC | 9 cut(s) | 377, 467, 725, 775, 808, 828, 845, 877, 1090 |
| Cfr10I | RCCGGY | 2 cut(s) | 822, 1639 |
| Cfr13I | GGNCC | 9 cut(s) | 718, 790, 820, 986, 987, 1288, 1312, 1579, 1580 |
| Cfr42I | CCGCGG | 1 cut(s) | 817 |
| CseI | GACGC | 4 cut(s) | 334, 664, 707, 1350 |
| Csp6I | GTAC | 8 cut(s) | 220, 390, 535, 882, 914, 925, 1058, 1680 |
| CviQI | GTAC | 8 cut(s) | 220, 390, 535, 882, 914, 925, 1058, 1680 |
| DdeI | CTNAG | 6 cut(s) | 254, 809, 1025, 1091, 1479, 1530 |
| DinI | GGCGCC | 1 cut(s) | 844 |
| DpnI | GATC | 4 cut(s) | 119, 1467, 1499, 1535 |
| DpnII | GATC | 4 cut(s) | 117, 1465, 1497, 1533 |
| EaeI | YGGCCR | 2 cut(s) | 1473, 1667 |
| Eam1104I | CTCTTC | 3 cut(s) | 549, 956, 962 |
| EarI | CTCTTC | 3 cut(s) | 549, 956, 962 |
| EciI | GGCGGA | 3 cut(s) | 604, 1010, 1504 |
| Ecl136II | GAGCTC | 3 cut(s) | 861, 1270, 1664 |
| Eco24I | GRGCYC | 7 cut(s) | 308, 863, 990, 1272, 1583, 1613, 1666 |
| Eco47I | GGWCC | 3 cut(s) | 718, 790, 820 |
| Eco47III | AGCGCT | 1 cut(s) | 466 |
| Eco53kI | GAGCTC | 3 cut(s) | 861, 1270, 1664 |
| Eco57I | CTGAAG | 3 cut(s) | 870, 1171, 1487 |
| Eco81I | CCTNAGG | 1 cut(s) | 1025 |
| Eco88I | CYCGRG | 1 cut(s) | 1735 |
| Eco91I | GGTNACC | 1 cut(s) | 978 |
| EcoICRI | GAGCTC | 3 cut(s) | 861, 1270, 1664 |
| EcoO109I | RGGNCCY | 3 cut(s) | 986, 1579, 1580 |
| EcoO65I | GGTNACC | 1 cut(s) | 978 |
| EcoRII | CCWGG | 6 cut(s) | 741, 1233, 1254, 1314, 1410, 1711 |
| EcoT38I | GRGCYC | 7 cut(s) | 308, 863, 990, 1272, 1583, 1613, 1666 |
| EgeI | GGCGCC | 1 cut(s) | 844 |
| EheI | GGCGCC | 1 cut(s) | 844 |
| Esp3I | CGTCTC | 2 cut(s) | 292, 620 |
| FaqI | GGGAC | 4 cut(s) | 337, 833, 1313, 1438 |
| FauI | CCCGC | 9 cut(s) | 809, 870, 887, 949, 997, 1041, 1279, 1455, 1500 |
| FblI | GTMKAC | 1 cut(s) | 1163 |
| FokI | GGATG | 3 cut(s) | 187, 261, 1228 |
| FriOI | GRGCYC | 7 cut(s) | 308, 863, 990, 1272, 1583, 1613, 1666 |
| FspBI | CTAG | 2 cut(s) | 279, 1544 |
| GlaI | GCGC | 9 cut(s) | 376, 466, 724, 774, 807, 827, 844, 876, 1089 |
| GsaI | CCCAGC | 1 cut(s) | 1147 |
| GsuI | CTGGAG | 5 cut(s) | 764, 788, 929, 1433, 1460 |
| HaeII | RGCGCY | 4 cut(s) | 378, 468, 809, 846 |
| HaeIII | GGCC | 7 cut(s) | 749, 988, 1290, 1313, 1475, 1581, 1669 |
| HgaI | GACGC | 4 cut(s) | 334, 664, 707, 1350 |
| HhaI | GCGC | 9 cut(s) | 377, 467, 725, 775, 808, 828, 845, 877, 1090 |
| Hin1I | GRCGYC | 1 cut(s) | 843 |
| Hin6I | GCGC | 9 cut(s) | 375, 465, 723, 773, 806, 826, 843, 875, 1088 |
| HinP1I | GCGC | 9 cut(s) | 375, 465, 723, 773, 806, 826, 843, 875, 1088 |
| HincII | GTYRAC | 3 cut(s) | 160, 943, 1164 |
| HindII | GTYRAC | 3 cut(s) | 160, 943, 1164 |
| HinfI | GANTC | 9 cut(s) | 544, 592, 670, 949, 1072, 1178, 1373, 1511, 1758 |
| HphI | GGTGA | 6 cut(s) | 280, 972, 1120, 1120, 1201, 1562 |
| Hpy166II | GTNNAC | 5 cut(s) | 160, 790, 943, 1111, 1164 |
| Hpy188I | TCNGA | 2 cut(s) | 371, 481 |
| Hpy188III | TCNNGA | 5 cut(s) | 322, 548, 667, 706, 1223 |
| Hpy8I | GTNNAC | 5 cut(s) | 160, 790, 943, 1111, 1164 |
| Hpy99I | CGWCG | 2 cut(s) | 668, 1344 |
| HpyAV | CCTTC | 9 cut(s) | 407, 528, 845, 1195, 1303, 1511, 1600, 1718, 1741 |
| HpyCH4III | ACNGT | 3 cut(s) | 103, 924, 1213 |
| HpyCH4IV | ACGT | 2 cut(s) | 1040, 1206 |
| HpyCH4V | TGCA | 9 cut(s) | 56, 71, 110, 225, 438, 901, 1241, 1600, 1648 |
| HpyF3I | CTNAG | 6 cut(s) | 254, 809, 1025, 1091, 1479, 1530 |
| HpySE526I | ACGT | 2 cut(s) | 1040, 1206 |
| Hsp92I | GRCGYC | 1 cut(s) | 843 |
| HspAI | GCGC | 9 cut(s) | 375, 465, 723, 773, 806, 826, 843, 875, 1088 |
| KasI | GGCGCC | 1 cut(s) | 842 |
| KpnI | GGTACC | 1 cut(s) | 885 |
| KspI | CCGCGG | 1 cut(s) | 817 |
| Kzo9I | GATC | 4 cut(s) | 117, 1465, 1497, 1533 |
| LweI | GCATC | 8 cut(s) | 65, 283, 582, 1250, 1354, 1449, 1584, 1626 |
| MaeI | CTAG | 2 cut(s) | 279, 1544 |
| MaeII | ACGT | 2 cut(s) | 1040, 1206 |
| MaeIII | GTNAC | 3 cut(s) | 695, 978, 1207 |
| MalI | GATC | 4 cut(s) | 119, 1467, 1499, 1535 |
| MbiI | CCGCTC | 4 cut(s) | 1140, 1405, 1426, 1685 |
| MboI | GATC | 4 cut(s) | 117, 1465, 1497, 1533 |
| MflI | RGATCY | 2 cut(s) | 117, 1497 |
| MhlI | GDGCHC | 8 cut(s) | 308, 863, 990, 1206, 1272, 1583, 1613, 1666 |
| MluCI | AATT | 1 cut(s) | 131 |
| MluI | ACGCGT | 1 cut(s) | 656 |
| Mly113I | GGCGCC | 1 cut(s) | 843 |
| MlyI | GAGTC | 5 cut(s) | 538, 664, 1066, 1367, 1520 |
| MseI | TTAA | 2 cut(s) | 114, 1100 |
| MspA1I | CMGCKG | 5 cut(s) | 816, 848, 1036, 1051, 1507 |
| MvaI | CCWGG | 6 cut(s) | 743, 1235, 1256, 1316, 1412, 1713 |
| MvnI | CGCG | 8 cut(s) | 564, 658, 723, 816, 828, 877, 918, 992 |
| NarI | GGCGCC | 1 cut(s) | 843 |
| NciI | CCSGG | 7 cut(s) | 333, 357, 625, 678, 763, 984, 1274 |
| NdeII | GATC | 4 cut(s) | 117, 1465, 1497, 1533 |
| NmeAIII | GCCGAG | 1 cut(s) | 1645 |
| NmuCI | GTSAC | 3 cut(s) | 695, 978, 1207 |
| NspI | RCATGY | 4 cut(s) | 316, 340, 390, 1453 |
| PagI | TCATGA | 1 cut(s) | 1222 |
| PciI | ACATGT | 1 cut(s) | 1449 |
| PfeI | GAWTC | 4 cut(s) | 592, 949, 1178, 1758 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1620 |
| PfoI | TCCNGGA | 2 cut(s) | 741, 1272 |
| PleI | GAGTC | 5 cut(s) | 538, 664, 1066, 1367, 1519 |
| PluTI | GGCGCC | 1 cut(s) | 846 |
| PpsI | GAGTC | 5 cut(s) | 538, 664, 1066, 1367, 1519 |
| PscI | ACATGT | 1 cut(s) | 1449 |
| PshAI | GACNNNNGTC | 2 cut(s) | 612, 1169 |
| Psp124BI | GAGCTC | 3 cut(s) | 863, 1272, 1666 |
| Psp6I | CCWGG | 6 cut(s) | 741, 1233, 1254, 1314, 1410, 1711 |
| PspEI | GGTNACC | 1 cut(s) | 978 |
| PspFI | CCCAGC | 1 cut(s) | 1143 |
| PspGI | CCWGG | 6 cut(s) | 741, 1233, 1254, 1314, 1410, 1711 |
| PspOMI | GGGCCC | 2 cut(s) | 986, 1579 |
| PspPI | GGNCC | 9 cut(s) | 718, 790, 820, 986, 987, 1288, 1312, 1579, 1580 |
| PstI | CTGCAG | 4 cut(s) | 73, 112, 227, 1602 |
| PstNI | CAGNNNCTG | 2 cut(s) | 107, 1255 |
| PsuI | RGATCY | 2 cut(s) | 117, 1497 |
| RsaI | GTAC | 8 cut(s) | 221, 391, 536, 883, 915, 926, 1059, 1681 |
| RsaNI | GTAC | 8 cut(s) | 220, 390, 535, 882, 914, 925, 1058, 1680 |
| SacI | GAGCTC | 3 cut(s) | 863, 1272, 1666 |
| SacII | CCGCGG | 1 cut(s) | 817 |
| SalI | GTCGAC | 1 cut(s) | 1162 |
| SaqAI | TTAA | 2 cut(s) | 114, 1100 |
| Sau3AI | GATC | 4 cut(s) | 117, 1465, 1497, 1533 |
| Sau96I | GGNCC | 9 cut(s) | 718, 790, 820, 986, 987, 1288, 1312, 1579, 1580 |
| SchI | GAGTC | 5 cut(s) | 538, 664, 1066, 1367, 1520 |
| SduI | GDGCHC | 8 cut(s) | 308, 863, 990, 1206, 1272, 1583, 1613, 1666 |
| SfaNI | GCATC | 8 cut(s) | 65, 283, 582, 1250, 1354, 1449, 1584, 1626 |
| SfcI | CTRYAG | 6 cut(s) | 69, 108, 223, 1046, 1292, 1598 |
| SfoI | GGCGCC | 1 cut(s) | 844 |
| Sfr303I | CCGCGG | 1 cut(s) | 817 |
| SgrBI | CCGCGG | 1 cut(s) | 817 |
| SinI | GGWCC | 3 cut(s) | 718, 790, 820 |
| Sse9I | AATT | 1 cut(s) | 131 |
| SspDI | GGCGCC | 1 cut(s) | 842 |
| SspMI | CTAG | 2 cut(s) | 279, 1544 |
| SstI | GAGCTC | 3 cut(s) | 863, 1272, 1666 |
| TaaI | ACNGT | 3 cut(s) | 103, 924, 1213 |
| TaiI | ACGT | 2 cut(s) | 1043, 1209 |
| TaqI | TCGA | 5 cut(s) | 46, 666, 1163, 1335, 1617 |
| TaqII | GACCGA | 1 cut(s) | 1149 |
| TasI | AATT | 1 cut(s) | 131 |
| TatI | WGTACW | 2 cut(s) | 389, 924 |
| TfiI | GAWTC | 4 cut(s) | 592, 949, 1178, 1758 |
| Tru1I | TTAA | 2 cut(s) | 114, 1100 |
| Tru9I | TTAA | 2 cut(s) | 114, 1100 |
| TscAI | CASTG | 2 cut(s) | 1696, 1708 |
| TseFI | GTSAC | 3 cut(s) | 695, 978, 1207 |
| Tsp45I | GTSAC | 3 cut(s) | 695, 978, 1207 |
| TspDTI | ATGAA | 5 cut(s) | 19, 300, 307, 331, 1211 |
| TspGWI | ACGGA | 2 cut(s) | 602, 1159 |
| TspRI | CASTG | 2 cut(s) | 1696, 1708 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1620 |
| VpaK11BI | GGWCC | 3 cut(s) | 718, 790, 820 |
| XceI | RCATGY | 4 cut(s) | 316, 340, 390, 1453 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 290, 1252 |
| XmiI | GTMKAC | 1 cut(s) | 1163 |
| XspI | CTAG | 2 cut(s) | 279, 1544 |