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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 416, 509 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 426 |
| AccBSI | CCGCTC | 1 cut(s) | 136 |
| AccII | CGCG | 1 cut(s) | 248 |
| AclWI | GGATC | 2 cut(s) | 192, 211 |
| AcsI | RAATTY | 1 cut(s) | 242 |
| AcuI | CTGAAG | 1 cut(s) | 206 |
| AcyI | GRCGYC | 1 cut(s) | 417 |
| AfaI | GTAC | 1 cut(s) | 347 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 426, 482 |
| AgsI | TTSAA | 1 cut(s) | 331 |
| AluBI | AGCT | 7 cut(s) | 22, 43, 106, 157, 190, 226, 283 |
| AluI | AGCT | 7 cut(s) | 22, 43, 106, 157, 190, 226, 283 |
| AlwI | GGATC | 2 cut(s) | 192, 211 |
| Ama87I | CYCGRG | 1 cut(s) | 476 |
| AoxI | GGCC | 4 cut(s) | 309, 375, 381, 452 |
| ApeKI | GCWGC | 3 cut(s) | 86, 178, 194 |
| ApoI | RAATTY | 1 cut(s) | 242 |
| AspLEI | GCGC | 1 cut(s) | 419 |
| AspS9I | GGNCC | 2 cut(s) | 381, 452 |
| AsuC2I | CCSGG | 1 cut(s) | 379 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| AvaI | CYCGRG | 1 cut(s) | 476 |
| BaeGI | GKGCMC | 1 cut(s) | 514 |
| BanI | GGYRCC | 2 cut(s) | 416, 509 |
| BbvCI | CCTCAGC | 1 cut(s) | 504 |
| BbvI | GCAGC | 3 cut(s) | 98, 165, 181 |
| BccI | CCATC | 2 cut(s) | 298, 428 |
| BceAI | ACGGC | 2 cut(s) | 368, 439 |
| BcnI | CCSGG | 1 cut(s) | 379 |
| BfoI | RGCGCY | 1 cut(s) | 420 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 323 |
| BisI | GCNGC | 7 cut(s) | 87, 179, 195, 237, 312, 315, 369 |
| BlpI | GCTNAGC | 1 cut(s) | 153 |
| BlsI | GCNGC | 7 cut(s) | 88, 180, 196, 238, 313, 316, 370 |
| Bme1390I | CCNGG | 1 cut(s) | 379 |
| BmeT110I | CYCGRG | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 2 cut(s) | 381, 452 |
| BmiI | GGNNCC | 4 cut(s) | 382, 418, 492, 511 |
| BmrFI | CCNGG | 1 cut(s) | 379 |
| BmrI | ACTGGG | 1 cut(s) | 436 |
| BmsI | GCATC | 1 cut(s) | 82 |
| BmuI | ACTGGG | 1 cut(s) | 436 |
| BpmI | CTGGAG | 2 cut(s) | 179, 284 |
| Bpu10I | CCTNAGC | 2 cut(s) | 33, 504 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 379 |
| BsaBI | GATNNNNATC | 1 cut(s) | 215 |
| BsaHI | GRCGYC | 1 cut(s) | 417 |
| BsaJI | CCNNGG | 2 cut(s) | 318, 378 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 426, 482 |
| Bse1I | ACTGG | 1 cut(s) | 431 |
| Bse8I | GATNNNNATC | 1 cut(s) | 215 |
| BseDI | CCNNGG | 2 cut(s) | 318, 378 |
| BseGI | GGATG | 2 cut(s) | 97, 309 |
| BseJI | GATNNNNATC | 1 cut(s) | 215 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 426, 482 |
| BseMII | CTCAG | 3 cut(s) | 167, 333, 495 |
| BseNI | ACTGG | 1 cut(s) | 431 |
| BseRI | GAGGAG | 1 cut(s) | 310 |
| BseSI | GKGCMC | 1 cut(s) | 514 |
| BseXI | GCAGC | 3 cut(s) | 98, 165, 181 |
| BseYI | CCCAGC | 2 cut(s) | 22, 279 |
| Bsh1236I | CGCG | 1 cut(s) | 248 |
| BshFI | GGCC | 4 cut(s) | 311, 377, 383, 454 |
| BshNI | GGYRCC | 2 cut(s) | 416, 509 |
| BsiHKCI | CYCGRG | 1 cut(s) | 476 |
| BsiSI | CCGG | 1 cut(s) | 378 |
| BslFI | GGGAC | 2 cut(s) | 140, 424 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 426, 482 |
| BsmFI | GGGAC | 2 cut(s) | 140, 424 |
| BsnI | GGCC | 4 cut(s) | 311, 377, 383, 454 |
| BsoBI | CYCGRG | 1 cut(s) | 476 |
| Bsp1286I | GDGCHC | 1 cut(s) | 514 |
| Bsp143I | GATC | 3 cut(s) | 7, 184, 216 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 153 |
| Bsp19I | CCATGG | 1 cut(s) | 318 |
| BspANI | GGCC | 4 cut(s) | 311, 377, 383, 454 |
| BspCNI | CTCAG | 3 cut(s) | 166, 334, 496 |
| BspFNI | CGCG | 1 cut(s) | 248 |
| BspLI | GGNNCC | 4 cut(s) | 382, 418, 492, 511 |
| BspPI | GGATC | 2 cut(s) | 192, 211 |
| BspT107I | GGYRCC | 2 cut(s) | 416, 509 |
| BsrBI | CCGCTC | 1 cut(s) | 136 |
| BsrI | ACTGG | 1 cut(s) | 431 |
| BssECI | CCNNGG | 2 cut(s) | 318, 378 |
| BssMI | GATC | 3 cut(s) | 7, 184, 216 |
| BssNI | GRCGYC | 1 cut(s) | 417 |
| BssT1I | CCWWGG | 1 cut(s) | 318 |
| Bst4CI | ACNGT | 1 cut(s) | 146 |
| BstACI | GRCGYC | 1 cut(s) | 417 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 4 cut(s) | 45, 97, 192, 514 |
| BstDEI | CTNAG | 4 cut(s) | 33, 153, 342, 504 |
| BstDSI | CCRYGG | 1 cut(s) | 318 |
| BstF5I | GGATG | 2 cut(s) | 97, 309 |
| BstFNI | CGCG | 1 cut(s) | 248 |
| BstH2I | RGCGCY | 1 cut(s) | 420 |
| BstHHI | GCGC | 1 cut(s) | 419 |
| BstKTI | GATC | 3 cut(s) | 10, 187, 219 |
| BstMBI | GATC | 3 cut(s) | 7, 184, 216 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 92, 187, 245, 254, 323, 374, 509 |
| BstSCI | CCNGG | 1 cut(s) | 377 |
| BstSLI | GKGCMC | 1 cut(s) | 514 |
| BstUI | CGCG | 1 cut(s) | 248 |
| BstV1I | GCAGC | 3 cut(s) | 98, 165, 181 |
| BstX2I | RGATCY | 1 cut(s) | 216 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 449 |
| BstYI | RGATCY | 1 cut(s) | 216 |
| BsuRI | GGCC | 4 cut(s) | 311, 377, 383, 454 |
| BtgI | CCRYGG | 1 cut(s) | 318 |
| BtsCI | GGATG | 2 cut(s) | 97, 309 |
| Cac8I | GCNNGC | 4 cut(s) | 45, 97, 192, 514 |
| CfoI | GCGC | 1 cut(s) | 419 |
| Cfr13I | GGNCC | 2 cut(s) | 381, 452 |
| CseI | GACGC | 1 cut(s) | 92 |
| Csp6I | GTAC | 1 cut(s) | 346 |
| CviAII | CATG | 3 cut(s) | 169, 258, 319 |
| CviQI | GTAC | 1 cut(s) | 346 |
| DdeI | CTNAG | 4 cut(s) | 33, 153, 342, 504 |
| DinI | GGCGCC | 1 cut(s) | 418 |
| DpnI | GATC | 3 cut(s) | 9, 186, 218 |
| DpnII | GATC | 3 cut(s) | 7, 184, 216 |
| EciI | GGCGGA | 1 cut(s) | 62 |
| Eco130I | CCWWGG | 1 cut(s) | 318 |
| Eco57I | CTGAAG | 1 cut(s) | 206 |
| Eco88I | CYCGRG | 1 cut(s) | 476 |
| EcoT14I | CCWWGG | 1 cut(s) | 318 |
| EgeI | GGCGCC | 1 cut(s) | 418 |
| EheI | GGCGCC | 1 cut(s) | 418 |
| ErhI | CCWWGG | 1 cut(s) | 318 |
| FaeI | CATG | 3 cut(s) | 172, 261, 322 |
| FaiI | YATR | 4 cut(s) | 170, 259, 320, 488 |
| FaqI | GGGAC | 2 cut(s) | 140, 424 |
| FatI | CATG | 3 cut(s) | 168, 257, 318 |
| FauI | CCCGC | 2 cut(s) | 117, 174 |
| Fnu4HI | GCNGC | 7 cut(s) | 87, 179, 195, 237, 312, 315, 369 |
| FokI | GGATG | 2 cut(s) | 104, 316 |
| Fsp4HI | GCNGC | 7 cut(s) | 87, 179, 195, 237, 312, 315, 369 |
| GlaI | GCGC | 1 cut(s) | 418 |
| GluI | GCNGC | 7 cut(s) | 87, 179, 195, 237, 312, 315, 369 |
| GsaI | CCCAGC | 2 cut(s) | 26, 283 |
| GsuI | CTGGAG | 2 cut(s) | 179, 284 |
| HaeII | RGCGCY | 1 cut(s) | 420 |
| HaeIII | GGCC | 4 cut(s) | 311, 377, 383, 454 |
| HapII | CCGG | 1 cut(s) | 378 |
| HgaI | GACGC | 1 cut(s) | 92 |
| HhaI | GCGC | 1 cut(s) | 419 |
| Hin1I | GRCGYC | 1 cut(s) | 417 |
| Hin1II | CATG | 3 cut(s) | 172, 261, 322 |
| Hin6I | GCGC | 1 cut(s) | 417 |
| HinP1I | GCGC | 1 cut(s) | 417 |
| HincII | GTYRAC | 1 cut(s) | 66 |
| HindII | GTYRAC | 1 cut(s) | 66 |
| HinfI | GANTC | 1 cut(s) | 298 |
| HpaII | CCGG | 1 cut(s) | 378 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy166II | GTNNAC | 1 cut(s) | 66 |
| Hpy188I | TCNGA | 2 cut(s) | 303, 465 |
| Hpy188III | TCNNGA | 3 cut(s) | 13, 205, 331 |
| Hpy8I | GTNNAC | 1 cut(s) | 66 |
| Hpy99I | CGWCG | 2 cut(s) | 119, 389 |
| HpyAV | CCTTC | 5 cut(s) | 10, 193, 230, 346, 475 |
| HpyCH4III | ACNGT | 1 cut(s) | 146 |
| HpyCH4IV | ACGT | 1 cut(s) | 393 |
| HpyCH4V | TGCA | 1 cut(s) | 55 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 92, 187, 245, 254, 323, 374, 509 |
| HpyF3I | CTNAG | 4 cut(s) | 33, 153, 342, 504 |
| HpySE526I | ACGT | 1 cut(s) | 393 |
| Hsp92I | GRCGYC | 1 cut(s) | 417 |
| Hsp92II | CATG | 3 cut(s) | 172, 261, 322 |
| HspAI | GCGC | 1 cut(s) | 417 |
| KasI | GGCGCC | 1 cut(s) | 416 |
| Kzo9I | GATC | 3 cut(s) | 7, 184, 216 |
| LmnI | GCTCC | 2 cut(s) | 19, 160 |
| Lsp1109I | GCAGC | 3 cut(s) | 98, 165, 181 |
| LweI | GCATC | 1 cut(s) | 82 |
| MaeII | ACGT | 1 cut(s) | 393 |
| MaeIII | GTNAC | 1 cut(s) | 80 |
| MalI | GATC | 3 cut(s) | 9, 186, 218 |
| MbiI | CCGCTC | 1 cut(s) | 136 |
| MboI | GATC | 3 cut(s) | 7, 184, 216 |
| MboII | GAAGA | 1 cut(s) | 220 |
| MflI | RGATCY | 1 cut(s) | 216 |
| MhlI | GDGCHC | 1 cut(s) | 514 |
| MluCI | AATT | 1 cut(s) | 242 |
| Mly113I | GGCGCC | 1 cut(s) | 417 |
| MlyI | GAGTC | 1 cut(s) | 307 |
| MmeI | TCCRAC | 1 cut(s) | 281 |
| MnlI | CCTC | 9 cut(s) | 22, 43, 259, 265, 288, 301, 316, 358, 499 |
| MspA1I | CMGCKG | 7 cut(s) | 61, 89, 157, 190, 226, 283, 516 |
| MspI | CCGG | 1 cut(s) | 378 |
| MspR9I | CCNGG | 1 cut(s) | 379 |
| MvnI | CGCG | 1 cut(s) | 248 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 92, 187, 245, 254, 323, 374, 509 |
| NarI | GGCGCC | 1 cut(s) | 417 |
| NciI | CCSGG | 1 cut(s) | 379 |
| NcoI | CCATGG | 1 cut(s) | 318 |
| NdeII | GATC | 3 cut(s) | 7, 184, 216 |
| NlaIII | CATG | 3 cut(s) | 172, 261, 322 |
| NlaIV | GGNNCC | 4 cut(s) | 382, 418, 492, 511 |
| NmuCI | GTSAC | 1 cut(s) | 80 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 474 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 426 |
| PkrI | GCNGC | 7 cut(s) | 88, 180, 196, 238, 313, 316, 370 |
| PleI | GAGTC | 1 cut(s) | 306 |
| PluTI | GGCGCC | 1 cut(s) | 420 |
| PpsI | GAGTC | 1 cut(s) | 306 |
| PspFI | CCCAGC | 2 cut(s) | 22, 279 |
| PspN4I | GGNNCC | 4 cut(s) | 382, 418, 492, 511 |
| PspPI | GGNCC | 2 cut(s) | 381, 452 |
| PsuI | RGATCY | 1 cut(s) | 216 |
| PvuII | CAGCTG | 4 cut(s) | 157, 190, 226, 283 |
| RsaI | GTAC | 1 cut(s) | 347 |
| RsaNI | GTAC | 1 cut(s) | 346 |
| SatI | GCNGC | 7 cut(s) | 87, 179, 195, 237, 312, 315, 369 |
| Sau3AI | GATC | 3 cut(s) | 7, 184, 216 |
| Sau96I | GGNCC | 2 cut(s) | 381, 452 |
| SchI | GAGTC | 1 cut(s) | 307 |
| ScrFI | CCNGG | 1 cut(s) | 379 |
| SduI | GDGCHC | 1 cut(s) | 514 |
| SfaNI | GCATC | 1 cut(s) | 82 |
| SfoI | GGCGCC | 1 cut(s) | 418 |
| Sse9I | AATT | 1 cut(s) | 242 |
| SspDI | GGCGCC | 1 cut(s) | 416 |
| StyD4I | CCNGG | 1 cut(s) | 377 |
| StyI | CCWWGG | 1 cut(s) | 318 |
| TaaI | ACNGT | 1 cut(s) | 146 |
| TaiI | ACGT | 1 cut(s) | 396 |
| TasI | AATT | 1 cut(s) | 242 |
| TatI | WGTACW | 1 cut(s) | 345 |
| TauI | GCSGC | 4 cut(s) | 239, 314, 317, 371 |
| TseFI | GTSAC | 1 cut(s) | 80 |
| TseI | GCWGC | 3 cut(s) | 86, 178, 194 |
| Tsp45I | GTSAC | 1 cut(s) | 80 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 426 |
| XapI | RAATTY | 1 cut(s) | 242 |