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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 212, 248, 344 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AccBSI | CCGCTC | 1 cut(s) | 351 |
| AclWI | GGATC | 2 cut(s) | 43, 502 |
| AcoI | YGGCCR | 2 cut(s) | 219, 377 |
| AcyI | GRCGYC | 1 cut(s) | 249 |
| AfaI | GTAC | 1 cut(s) | 463 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 19, 58, 258, 334, 429, 451, 533 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 477 |
| AjnI | CCWGG | 1 cut(s) | 216 |
| AluBI | AGCT | 1 cut(s) | 293 |
| AluI | AGCT | 1 cut(s) | 293 |
| Alw26I | GTCTC | 2 cut(s) | 464, 534 |
| AlwI | GGATC | 2 cut(s) | 43, 502 |
| Ama87I | CYCGRG | 3 cut(s) | 352, 450, 475 |
| AoxI | GGCC | 6 cut(s) | 24, 78, 219, 325, 377, 442 |
| ApeKI | GCWGC | 4 cut(s) | 137, 235, 238, 311 |
| AspLEI | GCGC | 3 cut(s) | 190, 251, 374 |
| AspS9I | GGNCC | 2 cut(s) | 326, 442 |
| AsuC2I | CCSGG | 2 cut(s) | 451, 452 |
| AsuHPI | GGTGA | 1 cut(s) | 113 |
| AvaI | CYCGRG | 3 cut(s) | 352, 450, 475 |
| BaeGI | GKGCMC | 2 cut(s) | 217, 349 |
| BalI | TGGCCA | 1 cut(s) | 221 |
| BanI | GGYRCC | 3 cut(s) | 212, 248, 344 |
| BbvCI | CCTCAGC | 1 cut(s) | 123 |
| BbvI | GCAGC | 4 cut(s) | 124, 222, 250, 323 |
| BccI | CCATC | 3 cut(s) | 88, 335, 452 |
| BciT130I | CCWGG | 1 cut(s) | 218 |
| BciVI | GTATCC | 1 cut(s) | 430 |
| BcnI | CCSGG | 2 cut(s) | 451, 452 |
| BcoDI | GTCTC | 2 cut(s) | 464, 534 |
| BfaI | CTAG | 1 cut(s) | 72 |
| BfmI | CTRYAG | 1 cut(s) | 236 |
| BfoI | RGCGCY | 3 cut(s) | 191, 252, 375 |
| BfuI | GTATCC | 1 cut(s) | 430 |
| BisI | GCNGC | 8 cut(s) | 69, 138, 201, 236, 239, 287, 312, 511 |
| BlsI | GCNGC | 8 cut(s) | 70, 139, 202, 237, 240, 288, 313, 512 |
| Bme1390I | CCNGG | 3 cut(s) | 218, 451, 452 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 477 |
| BmeT110I | CYCGRG | 3 cut(s) | 352, 450, 475 |
| BmgT120I | GGNCC | 2 cut(s) | 326, 442 |
| BmiI | GGNNCC | 5 cut(s) | 131, 214, 250, 328, 346 |
| BmrFI | CCNGG | 3 cut(s) | 218, 451, 452 |
| BmrI | ACTGGG | 1 cut(s) | 268 |
| BmsI | GCATC | 2 cut(s) | 278, 289 |
| BmuI | ACTGGG | 1 cut(s) | 268 |
| Bpu10I | CCTNAGC | 2 cut(s) | 123, 294 |
| BpuMI | CCSGG | 2 cut(s) | 451, 452 |
| BsaHI | GRCGYC | 1 cut(s) | 249 |
| BsaI | GGTCTC | 2 cut(s) | 464, 534 |
| BsaJI | CCNNGG | 4 cut(s) | 81, 216, 450, 490 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 19, 58, 258, 334, 429, 451, 533 |
| Bse118I | RCCGGY | 1 cut(s) | 379 |
| Bse1I | ACTGG | 2 cut(s) | 263, 278 |
| BseBI | CCWGG | 1 cut(s) | 218 |
| BseDI | CCNNGG | 4 cut(s) | 81, 216, 450, 490 |
| BseGI | GGATG | 5 cut(s) | 99, 269, 304, 391, 463 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 19, 58, 258, 334, 429, 451, 533 |
| BseMII | CTCAG | 4 cut(s) | 107, 114, 347, 422 |
| BseNI | ACTGG | 2 cut(s) | 263, 278 |
| BseSI | GKGCMC | 2 cut(s) | 217, 349 |
| BseXI | GCAGC | 4 cut(s) | 124, 222, 250, 323 |
| BseYI | CCCAGC | 1 cut(s) | 393 |
| Bsh1285I | CGRYCG | 1 cut(s) | 144 |
| BshFI | GGCC | 6 cut(s) | 26, 80, 221, 327, 379, 444 |
| BshNI | GGYRCC | 3 cut(s) | 212, 248, 344 |
| BsiEI | CGRYCG | 1 cut(s) | 144 |
| BsiHKCI | CYCGRG | 3 cut(s) | 352, 450, 475 |
| BsiSI | CCGG | 2 cut(s) | 380, 451 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 19, 58, 258, 334, 429, 451, 533 |
| BsmAI | GTCTC | 2 cut(s) | 464, 534 |
| BsnI | GGCC | 6 cut(s) | 26, 80, 221, 327, 379, 444 |
| Bso31I | GGTCTC | 2 cut(s) | 464, 534 |
| BsoBI | CYCGRG | 3 cut(s) | 352, 450, 475 |
| Bsp1286I | GDGCHC | 2 cut(s) | 217, 349 |
| Bsp143I | GATC | 3 cut(s) | 16, 48, 494 |
| BspANI | GGCC | 6 cut(s) | 26, 80, 221, 327, 379, 444 |
| BspCNI | CTCAG | 4 cut(s) | 108, 115, 346, 421 |
| BspLI | GGNNCC | 5 cut(s) | 131, 214, 250, 328, 346 |
| BspMAI | CTGCAG | 1 cut(s) | 240 |
| BspPI | GGATC | 2 cut(s) | 43, 502 |
| BspT107I | GGYRCC | 3 cut(s) | 212, 248, 344 |
| BspTNI | GGTCTC | 2 cut(s) | 464, 534 |
| BsrBI | CCGCTC | 1 cut(s) | 351 |
| BsrFI | RCCGGY | 1 cut(s) | 379 |
| BsrI | ACTGG | 2 cut(s) | 263, 278 |
| BssAI | RCCGGY | 1 cut(s) | 379 |
| BssECI | CCNNGG | 4 cut(s) | 81, 216, 450, 490 |
| BssMI | GATC | 3 cut(s) | 16, 48, 494 |
| BssNI | GRCGYC | 1 cut(s) | 249 |
| Bst2UI | CCWGG | 1 cut(s) | 218 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| BstACI | GRCGYC | 1 cut(s) | 249 |
| BstC8I | GCNNGC | 6 cut(s) | 78, 112, 291, 349, 381, 528 |
| BstDEI | CTNAG | 5 cut(s) | 116, 123, 294, 333, 408 |
| BstDSI | CCRYGG | 1 cut(s) | 490 |
| BstF5I | GGATG | 5 cut(s) | 99, 269, 304, 391, 463 |
| BstH2I | RGCGCY | 3 cut(s) | 191, 252, 375 |
| BstHHI | GCGC | 3 cut(s) | 190, 251, 374 |
| BstKTI | GATC | 3 cut(s) | 19, 51, 497 |
| BstMAI | GTCTC | 2 cut(s) | 464, 534 |
| BstMBI | GATC | 3 cut(s) | 16, 48, 494 |
| BstMCI | CGRYCG | 1 cut(s) | 144 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 77, 143, 206, 283, 299, 308, 357, 380 |
| BstNI | CCWGG | 1 cut(s) | 218 |
| BstSCI | CCNGG | 3 cut(s) | 216, 449, 450 |
| BstSFI | CTRYAG | 1 cut(s) | 236 |
| BstSLI | GKGCMC | 2 cut(s) | 217, 349 |
| BstV1I | GCAGC | 4 cut(s) | 124, 222, 250, 323 |
| BstX2I | RGATCY | 2 cut(s) | 48, 494 |
| BstYI | RGATCY | 2 cut(s) | 48, 494 |
| BsuI | GTATCC | 1 cut(s) | 430 |
| BsuRI | GGCC | 6 cut(s) | 26, 80, 221, 327, 379, 444 |
| BtgI | CCRYGG | 1 cut(s) | 490 |
| BtsCI | GGATG | 5 cut(s) | 99, 269, 304, 391, 463 |
| BtsIMutI | CAGTG | 1 cut(s) | 147 |
| Cac8I | GCNNGC | 6 cut(s) | 78, 112, 291, 349, 381, 528 |
| CfoI | GCGC | 3 cut(s) | 190, 251, 374 |
| Cfr10I | RCCGGY | 1 cut(s) | 379 |
| Cfr13I | GGNCC | 2 cut(s) | 326, 442 |
| Cfr9I | CCCGGG | 1 cut(s) | 450 |
| Csp6I | GTAC | 1 cut(s) | 462 |
| CviAII | CATG | 2 cut(s) | 274, 576 |
| CviQI | GTAC | 1 cut(s) | 462 |
| DdeI | CTNAG | 5 cut(s) | 116, 123, 294, 333, 408 |
| DinI | GGCGCC | 1 cut(s) | 250 |
| DpnI | GATC | 3 cut(s) | 18, 50, 496 |
| DpnII | GATC | 3 cut(s) | 16, 48, 494 |
| DriI | GACNNNNNGTC | 1 cut(s) | 477 |
| EaeI | YGGCCR | 2 cut(s) | 219, 377 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 477 |
| EciI | GGCGGA | 4 cut(s) | 188, 398, 470, 513 |
| Eco31I | GGTCTC | 2 cut(s) | 464, 534 |
| Eco88I | CYCGRG | 3 cut(s) | 352, 450, 475 |
| EcoO109I | RGGNCCY | 1 cut(s) | 326 |
| EcoRII | CCWGG | 1 cut(s) | 216 |
| EgeI | GGCGCC | 1 cut(s) | 250 |
| EheI | GGCGCC | 1 cut(s) | 250 |
| FaeI | CATG | 2 cut(s) | 277, 579 |
| FaiI | YATR | 5 cut(s) | 160, 180, 275, 447, 577 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 358, 390 |
| FatI | CATG | 2 cut(s) | 273, 575 |
| FauI | CCCGC | 4 cut(s) | 119, 353, 356, 535 |
| Fnu4HI | GCNGC | 8 cut(s) | 69, 138, 201, 236, 239, 287, 312, 511 |
| FokI | GGATG | 5 cut(s) | 106, 256, 311, 398, 470 |
| Fsp4HI | GCNGC | 8 cut(s) | 69, 138, 201, 236, 239, 287, 312, 511 |
| FspBI | CTAG | 1 cut(s) | 72 |
| GlaI | GCGC | 3 cut(s) | 189, 250, 373 |
| GluI | GCNGC | 8 cut(s) | 69, 138, 201, 236, 239, 287, 312, 511 |
| GsaI | CCCAGC | 1 cut(s) | 397 |
| HaeII | RGCGCY | 3 cut(s) | 191, 252, 375 |
| HaeIII | GGCC | 6 cut(s) | 26, 80, 221, 327, 379, 444 |
| HapII | CCGG | 2 cut(s) | 380, 451 |
| HhaI | GCGC | 3 cut(s) | 190, 251, 374 |
| Hin1I | GRCGYC | 1 cut(s) | 249 |
| Hin1II | CATG | 2 cut(s) | 277, 579 |
| Hin6I | GCGC | 3 cut(s) | 188, 249, 372 |
| HinP1I | GCGC | 3 cut(s) | 188, 249, 372 |
| HinfI | GANTC | 4 cut(s) | 155, 389, 400, 478 |
| HpaII | CCGG | 2 cut(s) | 380, 451 |
| HphI | GGTGA | 1 cut(s) | 113 |
| Hpy188I | TCNGA | 3 cut(s) | 14, 415, 499 |
| Hpy188III | TCNNGA | 1 cut(s) | 59 |
| Hpy99I | CGWCG | 1 cut(s) | 310 |
| HpyAV | CCTTC | 5 cut(s) | 62, 178, 199, 527, 542 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 1 cut(s) | 238 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 77, 143, 206, 283, 299, 308, 357, 380 |
| HpyF3I | CTNAG | 5 cut(s) | 116, 123, 294, 333, 408 |
| Hsp92I | GRCGYC | 1 cut(s) | 249 |
| Hsp92II | CATG | 2 cut(s) | 277, 579 |
| HspAI | GCGC | 3 cut(s) | 188, 249, 372 |
| KasI | GGCGCC | 1 cut(s) | 248 |
| KroI | GCCGGC | 1 cut(s) | 379 |
| KroNI | GCCGGC | 1 cut(s) | 381 |
| Kzo9I | GATC | 3 cut(s) | 16, 48, 494 |
| LmnI | GCTCC | 3 cut(s) | 15, 129, 307 |
| Lsp1109I | GCAGC | 4 cut(s) | 124, 222, 250, 323 |
| LweI | GCATC | 2 cut(s) | 278, 289 |
| MaeI | CTAG | 1 cut(s) | 72 |
| MalI | GATC | 3 cut(s) | 18, 50, 496 |
| MbiI | CCGCTC | 1 cut(s) | 351 |
| MboI | GATC | 3 cut(s) | 16, 48, 494 |
| MflI | RGATCY | 2 cut(s) | 48, 494 |
| MhlI | GDGCHC | 2 cut(s) | 217, 349 |
| MlsI | TGGCCA | 1 cut(s) | 221 |
| MluNI | TGGCCA | 1 cut(s) | 221 |
| Mly113I | GGCGCC | 1 cut(s) | 249 |
| MlyI | GAGTC | 4 cut(s) | 164, 383, 394, 487 |
| MmeI | TCCRAC | 1 cut(s) | 393 |
| MnlI | CCTC | 8 cut(s) | 37, 76, 91, 118, 340, 409, 433, 531 |
| Mox20I | TGGCCA | 1 cut(s) | 221 |
| MroNI | GCCGGC | 1 cut(s) | 379 |
| MscI | TGGCCA | 1 cut(s) | 221 |
| MseI | TTAA | 1 cut(s) | 87 |
| Msp20I | TGGCCA | 1 cut(s) | 221 |
| MspA1I | CMGCKG | 1 cut(s) | 397 |
| MspI | CCGG | 2 cut(s) | 380, 451 |
| MspR9I | CCNGG | 3 cut(s) | 218, 451, 452 |
| MvaI | CCWGG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 77, 143, 206, 283, 299, 308, 357, 380 |
| NaeI | GCCGGC | 1 cut(s) | 381 |
| NarI | GGCGCC | 1 cut(s) | 249 |
| NciI | CCSGG | 2 cut(s) | 451, 452 |
| NdeII | GATC | 3 cut(s) | 16, 48, 494 |
| NgoMIV | GCCGGC | 1 cut(s) | 379 |
| NlaIII | CATG | 2 cut(s) | 277, 579 |
| NlaIV | GGNNCC | 5 cut(s) | 131, 214, 250, 328, 346 |
| NmeAIII | GCCGAG | 1 cut(s) | 106 |
| PdiI | GCCGGC | 1 cut(s) | 381 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PkrI | GCNGC | 8 cut(s) | 70, 139, 202, 237, 240, 288, 313, 512 |
| PleI | GAGTC | 4 cut(s) | 163, 383, 394, 486 |
| PluTI | GGCGCC | 1 cut(s) | 252 |
| PpsI | GAGTC | 4 cut(s) | 163, 383, 394, 486 |
| Psp6I | CCWGG | 1 cut(s) | 216 |
| PspFI | CCCAGC | 1 cut(s) | 393 |
| PspGI | CCWGG | 1 cut(s) | 216 |
| PspN4I | GGNNCC | 5 cut(s) | 131, 214, 250, 328, 346 |
| PspPI | GGNCC | 2 cut(s) | 326, 442 |
| PstI | CTGCAG | 1 cut(s) | 240 |
| PsuI | RGATCY | 2 cut(s) | 48, 494 |
| RsaI | GTAC | 1 cut(s) | 463 |
| RsaNI | GTAC | 1 cut(s) | 462 |
| SaqAI | TTAA | 1 cut(s) | 87 |
| SatI | GCNGC | 8 cut(s) | 69, 138, 201, 236, 239, 287, 312, 511 |
| Sau3AI | GATC | 3 cut(s) | 16, 48, 494 |
| Sau96I | GGNCC | 2 cut(s) | 326, 442 |
| SchI | GAGTC | 4 cut(s) | 164, 383, 394, 487 |
| ScrFI | CCNGG | 3 cut(s) | 218, 451, 452 |
| SduI | GDGCHC | 2 cut(s) | 217, 349 |
| SetI | ASST | 6 cut(s) | 87, 295, 339, 420, 523, 538 |
| SfaNI | GCATC | 2 cut(s) | 278, 289 |
| SfcI | CTRYAG | 1 cut(s) | 236 |
| SfoI | GGCGCC | 1 cut(s) | 250 |
| SmaI | CCCGGG | 1 cut(s) | 452 |
| SspDI | GGCGCC | 1 cut(s) | 248 |
| SspMI | CTAG | 1 cut(s) | 72 |
| StyD4I | CCNGG | 3 cut(s) | 216, 449, 450 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| TaqII | GACCGA | 1 cut(s) | 209 |
| TauI | GCSGC | 4 cut(s) | 71, 203, 289, 513 |
| Tru1I | TTAA | 1 cut(s) | 87 |
| Tru9I | TTAA | 1 cut(s) | 87 |
| TscAI | CASTG | 1 cut(s) | 154 |
| TseI | GCWGC | 4 cut(s) | 137, 235, 238, 311 |
| TspDTI | ATGAA | 1 cut(s) | 44 |
| TspGWI | ACGGA | 2 cut(s) | 106, 294 |
| TspMI | CCCGGG | 1 cut(s) | 450 |
| TspRI | CASTG | 1 cut(s) | 154 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| XmaI | CCCGGG | 1 cut(s) | 450 |
| XspI | CTAG | 1 cut(s) | 72 |