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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 4 cut(s) | 16, 43, 256, 385 |
| AccII | CGCG | 2 cut(s) | 76, 345 |
| AcoI | YGGCCR | 3 cut(s) | 312, 444, 507 |
| AcuI | CTGAAG | 2 cut(s) | 88, 510 |
| AcyI | GRCGYC | 2 cut(s) | 158, 291 |
| AfaI | GTAC | 1 cut(s) | 499 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 178, 321 |
| AflIII | ACRYGT | 1 cut(s) | 343 |
| AgsI | TTSAA | 2 cut(s) | 521, 529 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 37 |
| AluBI | AGCT | 3 cut(s) | 108, 187, 304 |
| AluI | AGCT | 3 cut(s) | 108, 187, 304 |
| Alw21I | GWGCWC | 1 cut(s) | 189 |
| Alw26I | GTCTC | 2 cut(s) | 212, 352 |
| AoxI | GGCC | 3 cut(s) | 312, 444, 507 |
| ApeKI | GCWGC | 4 cut(s) | 166, 376, 421, 503 |
| AspLEI | GCGC | 1 cut(s) | 78 |
| AsuC2I | CCSGG | 1 cut(s) | 172 |
| AsuHPI | GGTGA | 2 cut(s) | 90, 479 |
| BanII | GRGCYC | 1 cut(s) | 189 |
| BbsI | GAAGAC | 1 cut(s) | 557 |
| Bbv12I | GWGCWC | 1 cut(s) | 189 |
| BbvI | GCAGC | 4 cut(s) | 178, 363, 433, 490 |
| BccI | CCATC | 3 cut(s) | 39, 323, 436 |
| BceAI | ACGGC | 2 cut(s) | 99, 313 |
| BcnI | CCSGG | 1 cut(s) | 172 |
| BcoDI | GTCTC | 2 cut(s) | 212, 352 |
| BfmI | CTRYAG | 1 cut(s) | 377 |
| Bme1390I | CCNGG | 1 cut(s) | 172 |
| BmrFI | CCNGG | 1 cut(s) | 172 |
| BpiI | GAAGAC | 1 cut(s) | 557 |
| BpmI | CTGGAG | 2 cut(s) | 83, 194 |
| Bpu10I | CCTNAGC | 1 cut(s) | 188 |
| BpuMI | CCSGG | 1 cut(s) | 172 |
| BsaHI | GRCGYC | 2 cut(s) | 158, 291 |
| BsaI | GGTCTC | 1 cut(s) | 212 |
| BsaJI | CCNNGG | 3 cut(s) | 170, 295, 561 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 5, 35 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 178, 321 |
| Bse1I | ACTGG | 1 cut(s) | 246 |
| BseDI | CCNNGG | 3 cut(s) | 170, 295, 561 |
| BseGI | GGATG | 1 cut(s) | 447 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 178, 321 |
| BseMII | CTCAG | 2 cut(s) | 202, 473 |
| BseNI | ACTGG | 1 cut(s) | 246 |
| BseX3I | CGGCCG | 1 cut(s) | 507 |
| BseXI | GCAGC | 4 cut(s) | 178, 363, 433, 490 |
| BseYI | CCCAGC | 2 cut(s) | 46, 460 |
| BsgI | GTGCAG | 1 cut(s) | 440 |
| Bsh1236I | CGCG | 2 cut(s) | 76, 345 |
| Bsh1285I | CGRYCG | 1 cut(s) | 510 |
| BshFI | GGCC | 3 cut(s) | 314, 446, 509 |
| BsiEI | CGRYCG | 1 cut(s) | 510 |
| BsiHKAI | GWGCWC | 1 cut(s) | 189 |
| BsiSI | CCGG | 1 cut(s) | 172 |
| BslFI | GGGAC | 1 cut(s) | 338 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 178, 321 |
| BsmAI | GTCTC | 2 cut(s) | 212, 352 |
| BsmBI | CGTCTC | 1 cut(s) | 352 |
| BsmFI | GGGAC | 1 cut(s) | 338 |
| BsnI | GGCC | 3 cut(s) | 314, 446, 509 |
| Bso31I | GGTCTC | 1 cut(s) | 212 |
| Bsp1286I | GDGCHC | 1 cut(s) | 189 |
| Bsp143I | GATC | 1 cut(s) | 366 |
| BspANI | GGCC | 3 cut(s) | 314, 446, 509 |
| BspCNI | CTCAG | 2 cut(s) | 201, 474 |
| BspFNI | CGCG | 2 cut(s) | 76, 345 |
| BspMAI | CTGCAG | 1 cut(s) | 381 |
| BspTNI | GGTCTC | 1 cut(s) | 212 |
| BsrBI | CCGCTC | 4 cut(s) | 16, 43, 256, 385 |
| BsrI | ACTGG | 1 cut(s) | 246 |
| BssECI | CCNNGG | 3 cut(s) | 170, 295, 561 |
| BssMI | GATC | 1 cut(s) | 366 |
| BssNI | GRCGYC | 2 cut(s) | 158, 291 |
| Bst6I | CTCTTC | 1 cut(s) | 32 |
| BstACI | GRCGYC | 2 cut(s) | 158, 291 |
| BstC8I | GCNNGC | 2 cut(s) | 41, 302 |
| BstDEI | CTNAG | 2 cut(s) | 188, 482 |
| BstDSI | CCRYGG | 1 cut(s) | 295 |
| BstEII | GGTNACC | 1 cut(s) | 472 |
| BstF5I | GGATG | 1 cut(s) | 447 |
| BstFNI | CGCG | 2 cut(s) | 76, 345 |
| BstHHI | GCGC | 1 cut(s) | 78 |
| BstKTI | GATC | 1 cut(s) | 369 |
| BstMAI | GTCTC | 2 cut(s) | 212, 352 |
| BstMBI | GATC | 1 cut(s) | 366 |
| BstMCI | CGRYCG | 1 cut(s) | 510 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 382, 509, 512, 521 |
| BstPI | GGTNACC | 1 cut(s) | 472 |
| BstSCI | CCNGG | 1 cut(s) | 170 |
| BstSFI | CTRYAG | 1 cut(s) | 377 |
| BstUI | CGCG | 2 cut(s) | 76, 345 |
| BstV1I | GCAGC | 4 cut(s) | 178, 363, 433, 490 |
| BstV2I | GAAGAC | 1 cut(s) | 557 |
| BstZI | CGGCCG | 1 cut(s) | 507 |
| BsuRI | GGCC | 3 cut(s) | 314, 446, 509 |
| BtgI | CCRYGG | 1 cut(s) | 295 |
| BtsCI | GGATG | 1 cut(s) | 447 |
| BtsI | GCAGTG | 1 cut(s) | 371 |
| BtsIMutI | CAGTG | 2 cut(s) | 371, 554 |
| Cac8I | GCNNGC | 2 cut(s) | 41, 302 |
| CciNI | GCGGCCGC | 1 cut(s) | 507 |
| CfoI | GCGC | 1 cut(s) | 78 |
| CseI | GACGC | 3 cut(s) | 147, 299, 334 |
| Csp6I | GTAC | 1 cut(s) | 498 |
| CviAII | CATG | 1 cut(s) | 140 |
| CviQI | GTAC | 1 cut(s) | 498 |
| DdeI | CTNAG | 2 cut(s) | 188, 482 |
| DpnI | GATC | 1 cut(s) | 368 |
| DpnII | GATC | 1 cut(s) | 366 |
| EaeI | YGGCCR | 3 cut(s) | 312, 444, 507 |
| EagI | CGGCCG | 1 cut(s) | 507 |
| Eam1104I | CTCTTC | 1 cut(s) | 32 |
| EarI | CTCTTC | 1 cut(s) | 32 |
| EciI | GGCGGA | 2 cut(s) | 239, 287 |
| Ecl136II | GAGCTC | 1 cut(s) | 187 |
| EclXI | CGGCCG | 1 cut(s) | 507 |
| Eco24I | GRGCYC | 1 cut(s) | 189 |
| Eco31I | GGTCTC | 1 cut(s) | 212 |
| Eco32I | GATATC | 1 cut(s) | 126 |
| Eco52I | CGGCCG | 1 cut(s) | 507 |
| Eco53kI | GAGCTC | 1 cut(s) | 187 |
| Eco57I | CTGAAG | 2 cut(s) | 88, 510 |
| Eco91I | GGTNACC | 1 cut(s) | 472 |
| EcoICRI | GAGCTC | 1 cut(s) | 187 |
| EcoO65I | GGTNACC | 1 cut(s) | 472 |
| EcoRV | GATATC | 1 cut(s) | 126 |
| EcoT38I | GRGCYC | 1 cut(s) | 189 |
| Esp3I | CGTCTC | 1 cut(s) | 352 |
| FaeI | CATG | 1 cut(s) | 143 |
| FaiI | YATR | 6 cut(s) | 37, 71, 141, 146, 285, 416 |
| FaqI | GGGAC | 1 cut(s) | 338 |
| FatI | CATG | 1 cut(s) | 139 |
| FauI | CCCGC | 5 cut(s) | 9, 124, 249, 315, 417 |
| FokI | GGATG | 1 cut(s) | 454 |
| FriOI | GRGCYC | 1 cut(s) | 189 |
| GlaI | GCGC | 1 cut(s) | 77 |
| GsaI | CCCAGC | 2 cut(s) | 50, 464 |
| GsuI | CTGGAG | 2 cut(s) | 83, 194 |
| HaeIII | GGCC | 3 cut(s) | 314, 446, 509 |
| HapII | CCGG | 1 cut(s) | 172 |
| HgaI | GACGC | 3 cut(s) | 147, 299, 334 |
| HhaI | GCGC | 1 cut(s) | 78 |
| Hin1I | GRCGYC | 2 cut(s) | 158, 291 |
| Hin1II | CATG | 1 cut(s) | 143 |
| Hin6I | GCGC | 1 cut(s) | 76 |
| HinP1I | GCGC | 1 cut(s) | 76 |
| HindIII | AAGCTT | 1 cut(s) | 302 |
| HinfI | GANTC | 1 cut(s) | 428 |
| HpaII | CCGG | 1 cut(s) | 172 |
| HphI | GGTGA | 2 cut(s) | 90, 479 |
| Hpy188I | TCNGA | 2 cut(s) | 123, 203 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 211, 481 |
| Hpy99I | CGWCG | 2 cut(s) | 85, 163 |
| HpyAV | CCTTC | 2 cut(s) | 112, 485 |
| HpyCH4V | TGCA | 2 cut(s) | 379, 421 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 382, 509, 512, 521 |
| HpyF3I | CTNAG | 2 cut(s) | 188, 482 |
| Hsp92I | GRCGYC | 2 cut(s) | 158, 291 |
| Hsp92II | CATG | 1 cut(s) | 143 |
| HspAI | GCGC | 1 cut(s) | 76 |
| Kzo9I | GATC | 1 cut(s) | 366 |
| LmnI | GCTCC | 3 cut(s) | 13, 358, 382 |
| Lsp1109I | GCAGC | 4 cut(s) | 178, 363, 433, 490 |
| MaeIII | GTNAC | 2 cut(s) | 278, 472 |
| MalI | GATC | 1 cut(s) | 368 |
| MbiI | CCGCTC | 4 cut(s) | 16, 43, 256, 385 |
| MboI | GATC | 1 cut(s) | 366 |
| MboII | GAAGA | 3 cut(s) | 19, 206, 562 |
| MfeI | CAATTG | 1 cut(s) | 87 |
| MhlI | GDGCHC | 1 cut(s) | 189 |
| MluCI | AATT | 1 cut(s) | 87 |
| MluI | ACGCGT | 1 cut(s) | 343 |
| MlyI | GAGTC | 1 cut(s) | 437 |
| MmeI | TCCRAC | 1 cut(s) | 336 |
| MseI | TTAA | 2 cut(s) | 306, 546 |
| MslI | CAYNNNNRTG | 1 cut(s) | 416 |
| MspA1I | CMGCKG | 3 cut(s) | 424, 503, 515 |
| MspI | CCGG | 1 cut(s) | 172 |
| MspR9I | CCNGG | 1 cut(s) | 172 |
| MunI | CAATTG | 1 cut(s) | 87 |
| MvnI | CGCG | 2 cut(s) | 76, 345 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 382, 509, 512, 521 |
| NciI | CCSGG | 1 cut(s) | 172 |
| NdeII | GATC | 1 cut(s) | 366 |
| NlaIII | CATG | 1 cut(s) | 143 |
| NmeAIII | GCCGAG | 1 cut(s) | 89 |
| NmuCI | GTSAC | 1 cut(s) | 278 |
| NotI | GCGGCCGC | 1 cut(s) | 507 |
| PleI | GAGTC | 1 cut(s) | 436 |
| PpsI | GAGTC | 1 cut(s) | 436 |
| Psp124BI | GAGCTC | 1 cut(s) | 189 |
| PspEI | GGTNACC | 1 cut(s) | 472 |
| PspFI | CCCAGC | 2 cut(s) | 46, 460 |
| PstI | CTGCAG | 1 cut(s) | 381 |
| RsaI | GTAC | 1 cut(s) | 499 |
| RsaNI | GTAC | 1 cut(s) | 498 |
| RseI | CAYNNNNRTG | 1 cut(s) | 416 |
| SacI | GAGCTC | 1 cut(s) | 189 |
| SaqAI | TTAA | 2 cut(s) | 306, 546 |
| Sau3AI | GATC | 1 cut(s) | 366 |
| SchI | GAGTC | 1 cut(s) | 437 |
| ScrFI | CCNGG | 1 cut(s) | 172 |
| SduI | GDGCHC | 1 cut(s) | 189 |
| SetI | ASST | 6 cut(s) | 110, 189, 208, 252, 306, 474 |
| SfcI | CTRYAG | 1 cut(s) | 377 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 416 |
| Sse9I | AATT | 1 cut(s) | 87 |
| SstI | GAGCTC | 1 cut(s) | 189 |
| StyD4I | CCNGG | 1 cut(s) | 170 |
| TaqI | TCGA | 1 cut(s) | 161 |
| TasI | AATT | 1 cut(s) | 87 |
| TauI | GCSGC | 8 cut(s) | 46, 158, 314, 395, 460, 509, 512, 515 |
| Tru1I | TTAA | 2 cut(s) | 306, 546 |
| Tru9I | TTAA | 2 cut(s) | 306, 546 |
| TscAI | CASTG | 2 cut(s) | 378, 561 |
| TseFI | GTSAC | 1 cut(s) | 278 |
| TseI | GCWGC | 4 cut(s) | 166, 376, 421, 503 |
| Tsp45I | GTSAC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 2 cut(s) | 354, 467 |
| TspRI | CASTG | 2 cut(s) | 378, 561 |