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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 56 |
| AccBSI | CCGCTC | 1 cut(s) | 400 |
| AccII | CGCG | 2 cut(s) | 102, 179 |
| AciI | CCGC | 9 cut(s) | 38, 102, 132, 179, 267, 276, 400, 464, 516 |
| AclWI | GGATC | 1 cut(s) | 412 |
| AcoI | YGGCCR | 1 cut(s) | 196 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AfaI | GTAC | 1 cut(s) | 126 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 391, 487 |
| AgsI | TTSAA | 1 cut(s) | 311 |
| AjnI | CCWGG | 1 cut(s) | 389 |
| AluBI | AGCT | 3 cut(s) | 327, 439, 523 |
| AluI | AGCT | 3 cut(s) | 327, 439, 523 |
| Alw26I | GTCTC | 5 cut(s) | 8, 154, 165, 176, 431 |
| AlwI | GGATC | 1 cut(s) | 412 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 223 |
| Ama87I | CYCGRG | 1 cut(s) | 137 |
| AoxI | GGCC | 6 cut(s) | 129, 192, 196, 219, 261, 447 |
| ApeKI | GCWGC | 4 cut(s) | 28, 107, 242, 475 |
| AspLEI | GCGC | 3 cut(s) | 59, 95, 480 |
| AspS9I | GGNCC | 3 cut(s) | 192, 220, 288 |
| AvaI | CYCGRG | 1 cut(s) | 137 |
| AvaII | GGWCC | 1 cut(s) | 288 |
| BanI | GGYRCC | 1 cut(s) | 56 |
| BauI | CACGAG | 1 cut(s) | 359 |
| BbvI | GCAGC | 4 cut(s) | 15, 94, 229, 487 |
| BccI | CCATC | 2 cut(s) | 194, 278 |
| BciT130I | CCWGG | 1 cut(s) | 391 |
| BcoDI | GTCTC | 5 cut(s) | 8, 154, 165, 176, 431 |
| BfoI | RGCGCY | 2 cut(s) | 60, 481 |
| BglII | AGATCT | 1 cut(s) | 544 |
| BisI | GCNGC | 8 cut(s) | 29, 38, 108, 132, 243, 401, 476, 517 |
| BlsI | GCNGC | 8 cut(s) | 30, 39, 109, 133, 244, 402, 477, 518 |
| Bme1390I | CCNGG | 1 cut(s) | 391 |
| Bme18I | GGWCC | 1 cut(s) | 288 |
| BmeT110I | CYCGRG | 1 cut(s) | 137 |
| BmgT120I | GGNCC | 3 cut(s) | 192, 220, 288 |
| BmiI | GGNNCC | 3 cut(s) | 58, 193, 289 |
| BmrFI | CCNGG | 1 cut(s) | 391 |
| BmsI | GCATC | 3 cut(s) | 24, 49, 499 |
| BoxI | GACNNNNGTC | 2 cut(s) | 343, 530 |
| BpmI | CTGGAG | 1 cut(s) | 413 |
| BpuEI | CTTGAG | 1 cut(s) | 533 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| BsaI | GGTCTC | 2 cut(s) | 176, 431 |
| BsaJI | CCNNGG | 6 cut(s) | 21, 72, 389, 390, 421, 486 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 551, 581 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 391, 487 |
| Bse118I | RCCGGY | 3 cut(s) | 59, 110, 194 |
| Bse1I | ACTGG | 2 cut(s) | 7, 94 |
| BseBI | CCWGG | 1 cut(s) | 391 |
| BseDI | CCNNGG | 6 cut(s) | 21, 72, 389, 390, 421, 486 |
| BseGI | GGATG | 3 cut(s) | 289, 472, 514 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 391, 487 |
| BseNI | ACTGG | 2 cut(s) | 7, 94 |
| BseXI | GCAGC | 4 cut(s) | 15, 94, 229, 487 |
| BseYI | CCCAGC | 1 cut(s) | 439 |
| BsgI | GTGCAG | 1 cut(s) | 278 |
| Bsh1236I | CGCG | 2 cut(s) | 102, 179 |
| BshFI | GGCC | 6 cut(s) | 131, 194, 198, 221, 263, 449 |
| BshNI | GGYRCC | 1 cut(s) | 56 |
| BsiHKCI | CYCGRG | 1 cut(s) | 137 |
| BsiSI | CCGG | 3 cut(s) | 60, 111, 195 |
| BslFI | GGGAC | 1 cut(s) | 301 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 391, 487 |
| BsmAI | GTCTC | 5 cut(s) | 8, 154, 165, 176, 431 |
| BsmBI | CGTCTC | 2 cut(s) | 154, 165 |
| BsmFI | GGGAC | 1 cut(s) | 301 |
| BsnI | GGCC | 6 cut(s) | 131, 194, 198, 221, 263, 449 |
| Bso31I | GGTCTC | 2 cut(s) | 176, 431 |
| BsoBI | CYCGRG | 1 cut(s) | 137 |
| Bsp143I | GATC | 3 cut(s) | 97, 417, 544 |
| Bsp19I | CCATGG | 1 cut(s) | 72 |
| BspACI | CCGC | 9 cut(s) | 38, 102, 132, 179, 267, 276, 400, 464, 516 |
| BspANI | GGCC | 6 cut(s) | 131, 194, 198, 221, 263, 449 |
| BspFNI | CGCG | 2 cut(s) | 102, 179 |
| BspLI | GGNNCC | 3 cut(s) | 58, 193, 289 |
| BspPI | GGATC | 1 cut(s) | 412 |
| BspT107I | GGYRCC | 1 cut(s) | 56 |
| BspTNI | GGTCTC | 2 cut(s) | 176, 431 |
| BsrBI | CCGCTC | 1 cut(s) | 400 |
| BsrFI | RCCGGY | 3 cut(s) | 59, 110, 194 |
| BsrI | ACTGG | 2 cut(s) | 7, 94 |
| BssAI | RCCGGY | 3 cut(s) | 59, 110, 194 |
| BssECI | CCNNGG | 6 cut(s) | 21, 72, 389, 390, 421, 486 |
| BssMI | GATC | 3 cut(s) | 97, 417, 544 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| BssSI | CACGAG | 1 cut(s) | 359 |
| BssT1I | CCWWGG | 3 cut(s) | 72, 421, 486 |
| Bst2BI | CACGAG | 1 cut(s) | 359 |
| Bst2UI | CCWGG | 1 cut(s) | 391 |
| Bst4CI | ACNGT | 2 cut(s) | 292, 315 |
| Bst6I | CTCTTC | 1 cut(s) | 200 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstC8I | GCNNGC | 6 cut(s) | 196, 200, 261, 265, 514, 521 |
| BstDSI | CCRYGG | 2 cut(s) | 21, 72 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 485 |
| BstF5I | GGATG | 3 cut(s) | 289, 472, 514 |
| BstFNI | CGCG | 2 cut(s) | 102, 179 |
| BstH2I | RGCGCY | 2 cut(s) | 60, 481 |
| BstHHI | GCGC | 3 cut(s) | 59, 95, 480 |
| BstKTI | GATC | 3 cut(s) | 100, 420, 547 |
| BstMAI | GTCTC | 5 cut(s) | 8, 154, 165, 176, 431 |
| BstMBI | GATC | 3 cut(s) | 97, 417, 544 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 34, 37, 99, 218, 273 |
| BstNI | CCWGG | 1 cut(s) | 391 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 343, 530 |
| BstSCI | CCNGG | 1 cut(s) | 389 |
| BstUI | CGCG | 2 cut(s) | 102, 179 |
| BstV1I | GCAGC | 4 cut(s) | 15, 94, 229, 487 |
| BstX2I | RGATCY | 2 cut(s) | 417, 544 |
| BstYI | RGATCY | 2 cut(s) | 417, 544 |
| BsuRI | GGCC | 6 cut(s) | 131, 194, 198, 221, 263, 449 |
| BtgI | CCRYGG | 2 cut(s) | 21, 72 |
| BtsCI | GGATG | 3 cut(s) | 289, 472, 514 |
| Cac8I | GCNNGC | 6 cut(s) | 196, 200, 261, 265, 514, 521 |
| CaiI | CAGNNNCTG | 1 cut(s) | 223 |
| CfoI | GCGC | 3 cut(s) | 59, 95, 480 |
| Cfr10I | RCCGGY | 3 cut(s) | 59, 110, 194 |
| Cfr13I | GGNCC | 3 cut(s) | 192, 220, 288 |
| CseI | GACGC | 1 cut(s) | 185 |
| Csp6I | GTAC | 1 cut(s) | 125 |
| CviAII | CATG | 2 cut(s) | 73, 563 |
| CviQI | GTAC | 1 cut(s) | 125 |
| DinI | GGCGCC | 1 cut(s) | 58 |
| DpnI | GATC | 3 cut(s) | 99, 419, 546 |
| DpnII | GATC | 3 cut(s) | 97, 417, 544 |
| EaeI | YGGCCR | 1 cut(s) | 196 |
| Eam1104I | CTCTTC | 1 cut(s) | 200 |
| EarI | CTCTTC | 1 cut(s) | 200 |
| EciI | GGCGGA | 1 cut(s) | 479 |
| Eco130I | CCWWGG | 3 cut(s) | 72, 421, 486 |
| Eco31I | GGTCTC | 2 cut(s) | 176, 431 |
| Eco47I | GGWCC | 1 cut(s) | 288 |
| Eco88I | CYCGRG | 1 cut(s) | 137 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 485 |
| EcoO109I | RGGNCCY | 1 cut(s) | 220 |
| EcoRII | CCWGG | 1 cut(s) | 389 |
| EcoT14I | CCWWGG | 3 cut(s) | 72, 421, 486 |
| EgeI | GGCGCC | 1 cut(s) | 58 |
| EheI | GGCGCC | 1 cut(s) | 58 |
| ErhI | CCWWGG | 3 cut(s) | 72, 421, 486 |
| Esp3I | CGTCTC | 2 cut(s) | 154, 165 |
| FaeI | CATG | 2 cut(s) | 76, 566 |
| FaiI | YATR | 6 cut(s) | 74, 239, 305, 506, 564, 587 |
| FaqI | GGGAC | 1 cut(s) | 301 |
| FatI | CATG | 2 cut(s) | 72, 562 |
| FauI | CCCGC | 2 cut(s) | 95, 269 |
| Fnu4HI | GCNGC | 8 cut(s) | 29, 38, 108, 132, 243, 401, 476, 517 |
| FokI | GGATG | 3 cut(s) | 296, 479, 521 |
| FseI | GGCCGGCC | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 8 cut(s) | 29, 38, 108, 132, 243, 401, 476, 517 |
| GlaI | GCGC | 3 cut(s) | 58, 94, 479 |
| GluI | GCNGC | 8 cut(s) | 29, 38, 108, 132, 243, 401, 476, 517 |
| GsaI | CCCAGC | 1 cut(s) | 443 |
| GsuI | CTGGAG | 1 cut(s) | 413 |
| HaeII | RGCGCY | 2 cut(s) | 60, 481 |
| HaeIII | GGCC | 6 cut(s) | 131, 194, 198, 221, 263, 449 |
| HapII | CCGG | 3 cut(s) | 60, 111, 195 |
| HgaI | GACGC | 1 cut(s) | 185 |
| HhaI | GCGC | 3 cut(s) | 59, 95, 480 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin1II | CATG | 2 cut(s) | 76, 566 |
| Hin6I | GCGC | 3 cut(s) | 57, 93, 478 |
| HinP1I | GCGC | 3 cut(s) | 57, 93, 478 |
| HinfI | GANTC | 3 cut(s) | 16, 377, 566 |
| HpaII | CCGG | 3 cut(s) | 60, 111, 195 |
| Hpy188I | TCNGA | 2 cut(s) | 13, 154 |
| Hpy188III | TCNNGA | 1 cut(s) | 430 |
| Hpy99I | CGWCG | 3 cut(s) | 179, 334, 353 |
| HpyCH4III | ACNGT | 2 cut(s) | 292, 315 |
| HpyCH4IV | ACGT | 3 cut(s) | 147, 231, 332 |
| HpyCH4V | TGCA | 1 cut(s) | 259 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 34, 37, 99, 218, 273 |
| HpySE526I | ACGT | 3 cut(s) | 147, 231, 332 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| Hsp92II | CATG | 2 cut(s) | 76, 566 |
| HspAI | GCGC | 3 cut(s) | 57, 93, 478 |
| KasI | GGCGCC | 1 cut(s) | 56 |
| KroI | GCCGGC | 1 cut(s) | 194 |
| KroNI | GCCGGC | 1 cut(s) | 196 |
| Kzo9I | GATC | 3 cut(s) | 97, 417, 544 |
| LmnI | GCTCC | 2 cut(s) | 117, 436 |
| Lsp1109I | GCAGC | 4 cut(s) | 15, 94, 229, 487 |
| LweI | GCATC | 3 cut(s) | 24, 49, 499 |
| MaeII | ACGT | 3 cut(s) | 147, 231, 332 |
| MaeIII | GTNAC | 1 cut(s) | 232 |
| MalI | GATC | 3 cut(s) | 99, 419, 546 |
| MbiI | CCGCTC | 1 cut(s) | 400 |
| MboI | GATC | 3 cut(s) | 97, 417, 544 |
| MboII | GAAGA | 2 cut(s) | 154, 217 |
| MflI | RGATCY | 2 cut(s) | 417, 544 |
| Mly113I | GGCGCC | 1 cut(s) | 57 |
| MlyI | GAGTC | 3 cut(s) | 10, 386, 560 |
| MmeI | TCCRAC | 1 cut(s) | 261 |
| MnlI | CCTC | 6 cut(s) | 160, 201, 247, 402, 426, 439 |
| MroNI | GCCGGC | 1 cut(s) | 194 |
| MseI | TTAA | 1 cut(s) | 537 |
| MspA1I | CMGCKG | 1 cut(s) | 267 |
| MspI | CCGG | 3 cut(s) | 60, 111, 195 |
| MspR9I | CCNGG | 1 cut(s) | 391 |
| MvaI | CCWGG | 1 cut(s) | 391 |
| MvnI | CGCG | 2 cut(s) | 102, 179 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 34, 37, 99, 218, 273 |
| NaeI | GCCGGC | 1 cut(s) | 196 |
| NarI | GGCGCC | 1 cut(s) | 57 |
| NcoI | CCATGG | 1 cut(s) | 72 |
| NdeII | GATC | 3 cut(s) | 97, 417, 544 |
| NgoMIV | GCCGGC | 1 cut(s) | 194 |
| NlaIII | CATG | 2 cut(s) | 76, 566 |
| NlaIV | GGNNCC | 3 cut(s) | 58, 193, 289 |
| NmeAIII | GCCGAG | 1 cut(s) | 33 |
| NmuCI | GTSAC | 1 cut(s) | 232 |
| PasI | CCCWGGG | 1 cut(s) | 390 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 357 |
| PdiI | GCCGGC | 1 cut(s) | 196 |
| PkrI | GCNGC | 8 cut(s) | 30, 39, 109, 133, 244, 402, 477, 518 |
| PleI | GAGTC | 3 cut(s) | 10, 385, 560 |
| PluTI | GGCGCC | 1 cut(s) | 60 |
| PpsI | GAGTC | 3 cut(s) | 10, 385, 560 |
| PshAI | GACNNNNGTC | 2 cut(s) | 343, 530 |
| Psp6I | CCWGG | 1 cut(s) | 389 |
| PspFI | CCCAGC | 1 cut(s) | 439 |
| PspGI | CCWGG | 1 cut(s) | 389 |
| PspN4I | GGNNCC | 3 cut(s) | 58, 193, 289 |
| PspPI | GGNCC | 3 cut(s) | 192, 220, 288 |
| PstNI | CAGNNNCTG | 1 cut(s) | 223 |
| PsuI | RGATCY | 2 cut(s) | 417, 544 |
| RigI | GGCCGGCC | 1 cut(s) | 198 |
| RsaI | GTAC | 1 cut(s) | 126 |
| RsaNI | GTAC | 1 cut(s) | 125 |
| SaqAI | TTAA | 1 cut(s) | 537 |
| SatI | GCNGC | 8 cut(s) | 29, 38, 108, 132, 243, 401, 476, 517 |
| Sau3AI | GATC | 3 cut(s) | 97, 417, 544 |
| Sau96I | GGNCC | 3 cut(s) | 192, 220, 288 |
| SchI | GAGTC | 3 cut(s) | 10, 386, 560 |
| ScrFI | CCNGG | 1 cut(s) | 391 |
| SetI | ASST | 9 cut(s) | 150, 234, 258, 329, 335, 427, 441, 462, 525 |
| SfaNI | GCATC | 3 cut(s) | 24, 49, 499 |
| SfoI | GGCGCC | 1 cut(s) | 58 |
| SgrAI | CRCCGGYG | 1 cut(s) | 59 |
| SinI | GGWCC | 1 cut(s) | 288 |
| SmlI | CTYRAG | 1 cut(s) | 548 |
| SmoI | CTYRAG | 1 cut(s) | 548 |
| SsiI | CCGC | 9 cut(s) | 38, 102, 132, 179, 267, 276, 400, 464, 516 |
| SspDI | GGCGCC | 1 cut(s) | 56 |
| StyD4I | CCNGG | 1 cut(s) | 389 |
| StyI | CCWWGG | 3 cut(s) | 72, 421, 486 |
| TaaI | ACNGT | 2 cut(s) | 292, 315 |
| TaiI | ACGT | 3 cut(s) | 150, 234, 335 |
| TaqI | TCGA | 1 cut(s) | 329 |
| TauI | GCSGC | 4 cut(s) | 40, 134, 403, 519 |
| Tru1I | TTAA | 1 cut(s) | 537 |
| Tru9I | TTAA | 1 cut(s) | 537 |
| TseFI | GTSAC | 1 cut(s) | 232 |
| TseI | GCWGC | 4 cut(s) | 28, 107, 242, 475 |
| Tsp45I | GTSAC | 1 cut(s) | 232 |
| TspGWI | ACGGA | 1 cut(s) | 337 |
| VpaK11BI | GGWCC | 1 cut(s) | 288 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 485 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 457 |