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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1591, 2491 |
| AatII | GACGTC | 2 cut(s) | 710, 2034 |
| AccB1I | GGYRCC | 3 cut(s) | 2318, 2354, 2570 |
| AccBSI | CCGCTC | 8 cut(s) | 935, 1220, 1447, 1756, 1783, 1996, 2074, 2125 |
| AccI | GTMKAC | 4 cut(s) | 689, 947, 1595, 2334 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AclWI | GGATC | 4 cut(s) | 992, 1079, 1092, 1416 |
| AcoI | YGGCCR | 5 cut(s) | 1135, 1398, 1428, 2052, 2215 |
| AcsI | RAATTY | 1 cut(s) | 1009 |
| AcuI | CTGAAG | 2 cut(s) | 756, 1828 |
| AcvI | CACGTG | 1 cut(s) | 534 |
| AcyI | GRCGYC | 5 cut(s) | 707, 1898, 2031, 2319, 2375 |
| AfaI | GTAC | 6 cut(s) | 24, 646, 869, 1250, 2285, 2449 |
| AflIII | ACRYGT | 5 cut(s) | 531, 533, 1194, 2083, 2337 |
| AgsI | TTSAA | 7 cut(s) | 1118, 1202, 1487, 2261, 2269, 2344, 2645 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 820, 2586 |
| AjiI | CACGTC | 1 cut(s) | 2389 |
| AjnI | CCWGG | 1 cut(s) | 875 |
| AleI | CACNNNNGTG | 1 cut(s) | 1464 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1745, 1777 |
| AluBI | AGCT | 9 cut(s) | 65, 682, 1045, 1711, 1927, 2044, 2272, 2441, 2639 |
| AluI | AGCT | 9 cut(s) | 65, 682, 1045, 1711, 1927, 2044, 2272, 2441, 2639 |
| Alw21I | GWGCWC | 2 cut(s) | 726, 1929 |
| Alw44I | GTGCAC | 1 cut(s) | 722 |
| AlwI | GGATC | 4 cut(s) | 992, 1079, 1092, 1416 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 612, 1912 |
| Ama87I | CYCGRG | 4 cut(s) | 640, 2322, 2559, 2598 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| ApaLI | GTGCAC | 1 cut(s) | 722 |
| ApeKI | GCWGC | 6 cut(s) | 1045, 1661, 1906, 2116, 2161, 2460 |
| ApoI | RAATTY | 1 cut(s) | 1009 |
| AsuC2I | CCSGG | 4 cut(s) | 1173, 1432, 2560, 2561 |
| AsuHPI | GGTGA | 4 cut(s) | 1091, 1294, 1343, 2219 |
| AvaI | CYCGRG | 4 cut(s) | 640, 2322, 2559, 2598 |
| AvaII | GGWCC | 8 cut(s) | 837, 1213, 1389, 1469, 1542, 1633, 2493, 2604 |
| BaeGI | GKGCMC | 1 cut(s) | 726 |
| BalI | TGGCCA | 1 cut(s) | 2054 |
| BamHI | GGATCC | 1 cut(s) | 1084 |
| BanI | GGYRCC | 3 cut(s) | 2318, 2354, 2570 |
| BanII | GRGCYC | 1 cut(s) | 1929 |
| BbrPI | CACGTG | 1 cut(s) | 534 |
| BbsI | GAAGAC | 2 cut(s) | 581, 1676 |
| Bbv12I | GWGCWC | 2 cut(s) | 726, 1929 |
| BbvI | GCAGC | 6 cut(s) | 1032, 1648, 1918, 2103, 2173, 2472 |
| BccI | CCATC | 4 cut(s) | 1082, 1358, 1779, 2063 |
| BceAI | ACGGC | 8 cut(s) | 704, 880, 1122, 1413, 1602, 1623, 1839, 2584 |
| BciT130I | CCWGG | 1 cut(s) | 877 |
| BcnI | CCSGG | 4 cut(s) | 1173, 1432, 2560, 2561 |
| BfaI | CTAG | 5 cut(s) | 593, 1712, 2069, 2183, 2546 |
| BfmI | CTRYAG | 3 cut(s) | 613, 2117, 2442 |
| BfoI | RGCGCY | 6 cut(s) | 791, 1304, 1568, 1582, 1697, 2322 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1658 |
| BlpI | GCTNAGC | 7 cut(s) | 146, 207, 268, 329, 390, 451, 1304 |
| BmcAI | AGTACT | 1 cut(s) | 646 |
| Bme1390I | CCNGG | 5 cut(s) | 877, 1173, 1432, 2560, 2561 |
| Bme18I | GGWCC | 8 cut(s) | 837, 1213, 1389, 1469, 1542, 1633, 2493, 2604 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 820, 2586 |
| BmeT110I | CYCGRG | 4 cut(s) | 640, 2322, 2559, 2598 |
| BmgBI | CACGTC | 1 cut(s) | 2389 |
| BmrFI | CCNGG | 5 cut(s) | 877, 1173, 1432, 2560, 2561 |
| BmrI | ACTGGG | 2 cut(s) | 2405, 2580 |
| BmsI | GCATC | 3 cut(s) | 1320, 1326, 1440 |
| BmuI | ACTGGG | 2 cut(s) | 2405, 2580 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2423 |
| BpiI | GAAGAC | 2 cut(s) | 581, 1676 |
| BpmI | CTGGAG | 1 cut(s) | 1934 |
| Bpu10I | CCTNAGC | 3 cut(s) | 576, 1928, 2136 |
| Bpu1102I | GCTNAGC | 7 cut(s) | 146, 207, 268, 329, 390, 451, 1304 |
| BpuEI | CTTGAG | 1 cut(s) | 790 |
| BpuMI | CCSGG | 4 cut(s) | 1173, 1432, 2560, 2561 |
| BsaAI | YACGTR | 1 cut(s) | 534 |
| BsaHI | GRCGYC | 5 cut(s) | 707, 1898, 2031, 2319, 2375 |
| BsaI | GGTCTC | 2 cut(s) | 1952, 2573 |
| BsaWI | WCCGGW | 2 cut(s) | 649, 1321 |
| Bse118I | RCCGGY | 4 cut(s) | 777, 1400, 1489, 2395 |
| Bse1I | ACTGG | 9 cut(s) | 833, 1039, 1135, 1309, 1345, 1526, 2007, 2411, 2586 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseBI | CCWGG | 1 cut(s) | 877 |
| BseGI | GGATG | 2 cut(s) | 1369, 1455 |
| BseNI | ACTGG | 9 cut(s) | 833, 1039, 1135, 1309, 1345, 1526, 2007, 2411, 2586 |
| BseSI | GKGCMC | 1 cut(s) | 726 |
| BseX3I | CGGCCG | 2 cut(s) | 1398, 1428 |
| BseXI | GCAGC | 6 cut(s) | 1032, 1648, 1918, 2103, 2173, 2472 |
| BseYI | CCCAGC | 6 cut(s) | 1269, 1550, 1786, 2437, 2496, 2508 |
| BsgI | GTGCAG | 2 cut(s) | 1400, 2180 |
| Bsh1285I | CGRYCG | 7 cut(s) | 730, 1401, 1431, 2250, 2400, 2624, 2628 |
| BshNI | GGYRCC | 3 cut(s) | 2318, 2354, 2570 |
| BsiEI | CGRYCG | 7 cut(s) | 730, 1401, 1431, 2250, 2400, 2624, 2628 |
| BsiHKAI | GWGCWC | 2 cut(s) | 726, 1929 |
| BsiHKCI | CYCGRG | 4 cut(s) | 640, 2322, 2559, 2598 |
| BslFI | GGGAC | 8 cut(s) | 106, 827, 850, 951, 1402, 1887, 2013, 2479 |
| BsmBI | CGTCTC | 8 cut(s) | 105, 166, 288, 349, 410, 471, 698, 1286 |
| BsmFI | GGGAC | 8 cut(s) | 106, 827, 850, 951, 1402, 1887, 2013, 2479 |
| BsmI | GAATGC | 1 cut(s) | 2242 |
| Bso31I | GGTCTC | 2 cut(s) | 1952, 2573 |
| BsoBI | CYCGRG | 4 cut(s) | 640, 2322, 2559, 2598 |
| Bsp1286I | GDGCHC | 2 cut(s) | 726, 1929 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp1407I | TGTACA | 1 cut(s) | 22 |
| Bsp143I | GATC | 7 cut(s) | 984, 1054, 1084, 1408, 2106, 2608, 2621 |
| Bsp1720I | GCTNAGC | 7 cut(s) | 146, 207, 268, 329, 390, 451, 1304 |
| Bsp19I | CCATGG | 1 cut(s) | 1209 |
| Bsp68I | TCGCGA | 1 cut(s) | 1191 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspHI | TCATGA | 1 cut(s) | 1740 |
| BspMAI | CTGCAG | 1 cut(s) | 2121 |
| BspPI | GGATC | 4 cut(s) | 992, 1079, 1092, 1416 |
| BspT107I | GGYRCC | 3 cut(s) | 2318, 2354, 2570 |
| BspTNI | GGTCTC | 2 cut(s) | 1952, 2573 |
| BsrBI | CCGCTC | 8 cut(s) | 935, 1220, 1447, 1756, 1783, 1996, 2074, 2125 |
| BsrFI | RCCGGY | 4 cut(s) | 777, 1400, 1489, 2395 |
| BsrGI | TGTACA | 1 cut(s) | 22 |
| BsrI | ACTGG | 9 cut(s) | 833, 1039, 1135, 1309, 1345, 1526, 2007, 2411, 2586 |
| BssAI | RCCGGY | 4 cut(s) | 777, 1400, 1489, 2395 |
| BssMI | GATC | 7 cut(s) | 984, 1054, 1084, 1408, 2106, 2608, 2621 |
| BssNAI | GTATAC | 2 cut(s) | 690, 948 |
| BssNI | GRCGYC | 5 cut(s) | 707, 1898, 2031, 2319, 2375 |
| BssT1I | CCWWGG | 3 cut(s) | 1209, 1354, 1971 |
| Bst1107I | GTATAC | 2 cut(s) | 690, 948 |
| Bst2UI | CCWGG | 1 cut(s) | 877 |
| Bst6I | CTCTTC | 4 cut(s) | 960, 1602, 1772, 2248 |
| BstACI | GRCGYC | 5 cut(s) | 707, 1898, 2031, 2319, 2375 |
| BstAUI | TGTACA | 1 cut(s) | 22 |
| BstBAI | YACGTR | 1 cut(s) | 534 |
| BstDSI | CCRYGG | 3 cut(s) | 1209, 1425, 2035 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1358, 1916 |
| BstF5I | GGATG | 2 cut(s) | 1369, 1455 |
| BstH2I | RGCGCY | 6 cut(s) | 791, 1304, 1568, 1582, 1697, 2322 |
| BstKTI | GATC | 7 cut(s) | 987, 1057, 1087, 1411, 2109, 2611, 2624 |
| BstMBI | GATC | 7 cut(s) | 984, 1054, 1084, 1408, 2106, 2608, 2621 |
| BstMCI | CGRYCG | 7 cut(s) | 730, 1401, 1431, 2250, 2400, 2624, 2628 |
| BstNI | CCWGG | 1 cut(s) | 877 |
| BstNSI | RCATGY | 2 cut(s) | 2087, 2341 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2423 |
| BstSCI | CCNGG | 5 cut(s) | 875, 1171, 1430, 2558, 2559 |
| BstSFI | CTRYAG | 3 cut(s) | 613, 2117, 2442 |
| BstSLI | GKGCMC | 1 cut(s) | 726 |
| BstV1I | GCAGC | 6 cut(s) | 1032, 1648, 1918, 2103, 2173, 2472 |
| BstV2I | GAAGAC | 2 cut(s) | 581, 1676 |
| BstX2I | RGATCY | 1 cut(s) | 1084 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1466 |
| BstYI | RGATCY | 1 cut(s) | 1084 |
| BstZ17I | GTATAC | 2 cut(s) | 690, 948 |
| BstZI | CGGCCG | 2 cut(s) | 1398, 1428 |
| BtgI | CCRYGG | 3 cut(s) | 1209, 1425, 2035 |
| BtgZI | GCGATG | 2 cut(s) | 1259, 2309 |
| BtrI | CACGTC | 1 cut(s) | 2389 |
| BtsCI | GGATG | 2 cut(s) | 1369, 1455 |
| BtsIMutI | CAGTG | 4 cut(s) | 1383, 1503, 1533, 2418 |
| BtuMI | TCGCGA | 1 cut(s) | 1191 |
| CaiI | CAGNNNCTG | 2 cut(s) | 612, 1912 |
| CciI | TCATGA | 1 cut(s) | 1740 |
| Cfr10I | RCCGGY | 4 cut(s) | 777, 1400, 1489, 2395 |
| Cfr42I | CCGCGG | 2 cut(s) | 1428, 2038 |
| Cfr9I | CCCGGG | 1 cut(s) | 2559 |
| CseI | GACGC | 6 cut(s) | 835, 964, 1202, 1610, 1887, 2364 |
| Csp6I | GTAC | 6 cut(s) | 23, 645, 868, 1249, 2284, 2448 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 736, 771 |
| CviAII | CATG | 4 cut(s) | 1210, 1741, 2084, 2338 |
| CviQI | GTAC | 6 cut(s) | 23, 645, 868, 1249, 2284, 2448 |
| DinI | GGCGCC | 1 cut(s) | 2320 |
| DpnI | GATC | 7 cut(s) | 986, 1056, 1086, 1410, 2108, 2610, 2623 |
| DpnII | GATC | 7 cut(s) | 984, 1054, 1084, 1408, 2106, 2608, 2621 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1591, 2491 |
| DriI | GACNNNNNGTC | 2 cut(s) | 820, 2586 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1591, 2491 |
| EaeI | YGGCCR | 5 cut(s) | 1135, 1398, 1428, 2052, 2215 |
| EagI | CGGCCG | 2 cut(s) | 1398, 1428 |
| Eam1104I | CTCTTC | 4 cut(s) | 960, 1602, 1772, 2248 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 820, 2586 |
| EarI | CTCTTC | 4 cut(s) | 960, 1602, 1772, 2248 |
| EciI | GGCGGA | 8 cut(s) | 1013, 1015, 1158, 1625, 1979, 2027, 2161, 2294 |
| Ecl136II | GAGCTC | 1 cut(s) | 1927 |
| EclXI | CGGCCG | 2 cut(s) | 1398, 1428 |
| Eco130I | CCWWGG | 3 cut(s) | 1209, 1354, 1971 |
| Eco24I | GRGCYC | 1 cut(s) | 1929 |
| Eco31I | GGTCTC | 2 cut(s) | 1952, 2573 |
| Eco47I | GGWCC | 8 cut(s) | 837, 1213, 1389, 1469, 1542, 1633, 2493, 2604 |
| Eco52I | CGGCCG | 2 cut(s) | 1398, 1428 |
| Eco53kI | GAGCTC | 1 cut(s) | 1927 |
| Eco57I | CTGAAG | 2 cut(s) | 756, 1828 |
| Eco72I | CACGTG | 1 cut(s) | 534 |
| Eco88I | CYCGRG | 4 cut(s) | 640, 2322, 2559, 2598 |
| EcoICRI | GAGCTC | 1 cut(s) | 1927 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1358, 1916 |
| EcoO109I | RGGNCCY | 4 cut(s) | 670, 837, 1389, 2493 |
| EcoRII | CCWGG | 1 cut(s) | 875 |
| EcoT14I | CCWWGG | 3 cut(s) | 1209, 1354, 1971 |
| EcoT38I | GRGCYC | 1 cut(s) | 1929 |
| EgeI | GGCGCC | 1 cut(s) | 2320 |
| EheI | GGCGCC | 1 cut(s) | 2320 |
| ErhI | CCWWGG | 3 cut(s) | 1209, 1354, 1971 |
| Esp3I | CGTCTC | 8 cut(s) | 105, 166, 288, 349, 410, 471, 698, 1286 |
| FaeI | CATG | 4 cut(s) | 1213, 1744, 2087, 2341 |
| FaqI | GGGAC | 8 cut(s) | 106, 827, 850, 951, 1402, 1887, 2013, 2479 |
| FatI | CATG | 4 cut(s) | 1209, 1740, 2083, 2337 |
| FblI | GTMKAC | 4 cut(s) | 689, 947, 1595, 2334 |
| FokI | GGATG | 2 cut(s) | 1376, 1462 |
| FriOI | GRGCYC | 1 cut(s) | 1929 |
| FspBI | CTAG | 5 cut(s) | 593, 1712, 2069, 2183, 2546 |
| GsaI | CCCAGC | 6 cut(s) | 1273, 1554, 1790, 2441, 2500, 2512 |
| GsuI | CTGGAG | 1 cut(s) | 1934 |
| HaeII | RGCGCY | 6 cut(s) | 791, 1304, 1568, 1582, 1697, 2322 |
| HgaI | GACGC | 6 cut(s) | 835, 964, 1202, 1610, 1887, 2364 |
| Hin1I | GRCGYC | 5 cut(s) | 707, 1898, 2031, 2319, 2375 |
| Hin1II | CATG | 4 cut(s) | 1213, 1744, 2087, 2341 |
| HincII | GTYRAC | 1 cut(s) | 529 |
| HindII | GTYRAC | 1 cut(s) | 529 |
| HindIII | AAGCTT | 1 cut(s) | 680 |
| HinfI | GANTC | 5 cut(s) | 815, 1186, 1592, 1715, 2168 |
| HpaI | GTTAAC | 1 cut(s) | 529 |
| HphI | GGTGA | 4 cut(s) | 1091, 1294, 1343, 2219 |
| Hpy166II | GTNNAC | 9 cut(s) | 23, 529, 690, 724, 766, 948, 1285, 1596, 2335 |
| Hpy188III | TCNNGA | 7 cut(s) | 650, 734, 1190, 1741, 1951, 2401, 2546 |
| Hpy8I | GTNNAC | 9 cut(s) | 23, 529, 690, 724, 766, 948, 1285, 1596, 2335 |
| Hpy99I | CGWCG | 9 cut(s) | 712, 719, 851, 901, 1196, 1903, 2488, 2524, 2570 |
| HpyCH4IV | ACGT | 6 cut(s) | 533, 707, 1295, 2031, 2331, 2388 |
| HpyCH4V | TGCA | 7 cut(s) | 84, 724, 744, 1381, 1733, 2119, 2161 |
| HpySE526I | ACGT | 6 cut(s) | 533, 707, 1295, 2031, 2331, 2388 |
| Hsp92I | GRCGYC | 5 cut(s) | 707, 1898, 2031, 2319, 2375 |
| Hsp92II | CATG | 4 cut(s) | 1213, 1744, 2087, 2341 |
| KasI | GGCGCC | 1 cut(s) | 2318 |
| KflI | GGGWCCC | 2 cut(s) | 1389, 2493 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| KroI | GCCGGC | 1 cut(s) | 777 |
| KroNI | GCCGGC | 1 cut(s) | 779 |
| KspAI | GTTAAC | 1 cut(s) | 529 |
| KspI | CCGCGG | 2 cut(s) | 1428, 2038 |
| Kzo9I | GATC | 7 cut(s) | 984, 1054, 1084, 1408, 2106, 2608, 2621 |
| LmnI | GCTCC | 8 cut(s) | 70, 785, 1042, 1076, 1444, 1753, 2098, 2122 |
| Lsp1109I | GCAGC | 6 cut(s) | 1032, 1648, 1918, 2103, 2173, 2472 |
| LweI | GCATC | 3 cut(s) | 1320, 1326, 1440 |
| MaeI | CTAG | 5 cut(s) | 593, 1712, 2069, 2183, 2546 |
| MaeII | ACGT | 6 cut(s) | 533, 707, 1295, 2031, 2331, 2388 |
| MaeIII | GTNAC | 9 cut(s) | 233, 608, 623, 632, 1501, 1507, 2063, 2376, 2529 |
| MalI | GATC | 7 cut(s) | 986, 1056, 1086, 1410, 2108, 2610, 2623 |
| MbiI | CCGCTC | 8 cut(s) | 935, 1220, 1447, 1756, 1783, 1996, 2074, 2125 |
| MboI | GATC | 7 cut(s) | 984, 1054, 1084, 1408, 2106, 2608, 2621 |
| MfeI | CAATTG | 1 cut(s) | 1827 |
| MflI | RGATCY | 1 cut(s) | 1084 |
| MhlI | GDGCHC | 2 cut(s) | 726, 1929 |
| MlsI | TGGCCA | 1 cut(s) | 2054 |
| MluCI | AATT | 4 cut(s) | 1009, 1118, 1231, 1827 |
| MluI | ACGCGT | 1 cut(s) | 1194 |
| MluNI | TGGCCA | 1 cut(s) | 2054 |
| Mly113I | GGCGCC | 1 cut(s) | 2319 |
| MlyI | GAGTC | 4 cut(s) | 809, 1195, 1601, 2177 |
| MmeI | TCCRAC | 3 cut(s) | 2076, 2502, 2615 |
| Mox20I | TGGCCA | 1 cut(s) | 2054 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MroNI | GCCGGC | 1 cut(s) | 777 |
| MscI | TGGCCA | 1 cut(s) | 2054 |
| MseI | TTAA | 5 cut(s) | 528, 600, 909, 1064, 1106 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1464, 2156 |
| Msp20I | TGGCCA | 1 cut(s) | 2054 |
| MspR9I | CCNGG | 5 cut(s) | 877, 1173, 1432, 2560, 2561 |
| MunI | CAATTG | 1 cut(s) | 1827 |
| Mva1269I | GAATGC | 1 cut(s) | 2242 |
| MvaI | CCWGG | 1 cut(s) | 877 |
| NaeI | GCCGGC | 1 cut(s) | 779 |
| NarI | GGCGCC | 1 cut(s) | 2319 |
| NciI | CCSGG | 4 cut(s) | 1173, 1432, 2560, 2561 |
| NcoI | CCATGG | 1 cut(s) | 1209 |
| NdeII | GATC | 7 cut(s) | 984, 1054, 1084, 1408, 2106, 2608, 2621 |
| NgoMIV | GCCGGC | 1 cut(s) | 777 |
| NlaIII | CATG | 4 cut(s) | 1213, 1744, 2087, 2341 |
| NmeAIII | GCCGAG | 1 cut(s) | 1750 |
| NmuCI | GTSAC | 6 cut(s) | 233, 1501, 1507, 2063, 2376, 2529 |
| NruI | TCGCGA | 1 cut(s) | 1191 |
| NspI | RCATGY | 2 cut(s) | 2087, 2341 |
| OliI | CACNNNNGTG | 1 cut(s) | 1464 |
| PaeR7I | CTCGAG | 1 cut(s) | 640 |
| PagI | TCATGA | 1 cut(s) | 1740 |
| PciI | ACATGT | 2 cut(s) | 2083, 2337 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 723, 1887 |
| PctI | GAATGC | 1 cut(s) | 2242 |
| PdiI | GCCGGC | 1 cut(s) | 779 |
| PfeI | GAWTC | 1 cut(s) | 1715 |
| PflFI | GACNNNGTC | 6 cut(s) | 97, 158, 280, 341, 402, 463 |
| Ple19I | CGATCG | 1 cut(s) | 2624 |
| PleI | GAGTC | 4 cut(s) | 809, 1194, 1600, 2176 |
| PluTI | GGCGCC | 1 cut(s) | 2322 |
| PmaCI | CACGTG | 1 cut(s) | 534 |
| PmlI | CACGTG | 1 cut(s) | 534 |
| PpsI | GAGTC | 4 cut(s) | 809, 1194, 1600, 2176 |
| Ppu21I | YACGTR | 1 cut(s) | 534 |
| PpuMI | RGGWCCY | 3 cut(s) | 837, 1389, 2493 |
| PscI | ACATGT | 2 cut(s) | 2083, 2337 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2423 |
| Psp124BI | GAGCTC | 1 cut(s) | 1929 |
| Psp5II | RGGWCCY | 3 cut(s) | 837, 1389, 2493 |
| Psp6I | CCWGG | 1 cut(s) | 875 |
| PspCI | CACGTG | 1 cut(s) | 534 |
| PspFI | CCCAGC | 6 cut(s) | 1269, 1550, 1786, 2437, 2496, 2508 |
| PspGI | CCWGG | 1 cut(s) | 875 |
| PspPPI | RGGWCCY | 3 cut(s) | 837, 1389, 2493 |
| PspXI | VCTCGAGB | 1 cut(s) | 640 |
| PstI | CTGCAG | 1 cut(s) | 2121 |
| PstNI | CAGNNNCTG | 2 cut(s) | 612, 1912 |
| PsuI | RGATCY | 1 cut(s) | 1084 |
| PsyI | GACNNNGTC | 6 cut(s) | 97, 158, 280, 341, 402, 463 |
| PvuI | CGATCG | 1 cut(s) | 2624 |
| PvuII | CAGCTG | 2 cut(s) | 2441, 2639 |
| RruI | TCGCGA | 1 cut(s) | 1191 |
| RsaI | GTAC | 6 cut(s) | 24, 646, 869, 1250, 2285, 2449 |
| RsaNI | GTAC | 6 cut(s) | 23, 645, 868, 1249, 2284, 2448 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1464, 2156 |
| SacI | GAGCTC | 1 cut(s) | 1929 |
| SacII | CCGCGG | 2 cut(s) | 1428, 2038 |
| SaqAI | TTAA | 5 cut(s) | 528, 600, 909, 1064, 1106 |
| Sau3AI | GATC | 7 cut(s) | 984, 1054, 1084, 1408, 2106, 2608, 2621 |
| ScaI | AGTACT | 1 cut(s) | 646 |
| SchI | GAGTC | 4 cut(s) | 809, 1195, 1601, 2177 |
| ScrFI | CCNGG | 5 cut(s) | 877, 1173, 1432, 2560, 2561 |
| SduI | GDGCHC | 2 cut(s) | 726, 1929 |
| SfaNI | GCATC | 3 cut(s) | 1320, 1326, 1440 |
| SfcI | CTRYAG | 3 cut(s) | 613, 2117, 2442 |
| SfoI | GGCGCC | 1 cut(s) | 2320 |
| Sfr274I | CTCGAG | 1 cut(s) | 640 |
| Sfr303I | CCGCGG | 2 cut(s) | 1428, 2038 |
| SgrBI | CCGCGG | 2 cut(s) | 1428, 2038 |
| SinI | GGWCC | 8 cut(s) | 837, 1213, 1389, 1469, 1542, 1633, 2493, 2604 |
| SlaI | CTCGAG | 1 cut(s) | 640 |
| SmaI | CCCGGG | 1 cut(s) | 2561 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1464, 2156 |
| SmlI | CTYRAG | 2 cut(s) | 640, 769 |
| SmoI | CTYRAG | 2 cut(s) | 640, 769 |
| Sse9I | AATT | 4 cut(s) | 1009, 1118, 1231, 1827 |
| SspDI | GGCGCC | 1 cut(s) | 2318 |
| SspI | AATATT | 1 cut(s) | 1110 |
| SspMI | CTAG | 5 cut(s) | 593, 1712, 2069, 2183, 2546 |
| SstI | GAGCTC | 1 cut(s) | 1929 |
| StyD4I | CCNGG | 5 cut(s) | 875, 1171, 1430, 2558, 2559 |
| StyI | CCWWGG | 3 cut(s) | 1209, 1354, 1971 |
| TaiI | ACGT | 6 cut(s) | 536, 710, 1298, 2034, 2334, 2391 |
| TaqI | TCGA | 9 cut(s) | 538, 641, 881, 931, 1053, 1184, 1901, 1992, 2400 |
| TaqII | GACCGA | 3 cut(s) | 1230, 2236, 2614 |
| TasI | AATT | 4 cut(s) | 1009, 1118, 1231, 1827 |
| TatI | WGTACW | 3 cut(s) | 22, 644, 2283 |
| TfiI | GAWTC | 1 cut(s) | 1715 |
| Tru1I | TTAA | 5 cut(s) | 528, 600, 909, 1064, 1106 |
| Tru9I | TTAA | 5 cut(s) | 528, 600, 909, 1064, 1106 |
| TscAI | CASTG | 4 cut(s) | 1383, 1510, 1533, 2418 |
| TseFI | GTSAC | 6 cut(s) | 233, 1501, 1507, 2063, 2376, 2529 |
| TseI | GCWGC | 6 cut(s) | 1045, 1661, 1906, 2116, 2161, 2460 |
| Tsp45I | GTSAC | 6 cut(s) | 233, 1501, 1507, 2063, 2376, 2529 |
| TspDTI | ATGAA | 4 cut(s) | 900, 1729, 2094, 2207 |
| TspGWI | ACGGA | 3 cut(s) | 575, 2245, 2501 |
| TspMI | CCCGGG | 1 cut(s) | 2559 |
| TspRI | CASTG | 4 cut(s) | 1383, 1510, 1533, 2418 |
| Tth111I | GACNNNGTC | 6 cut(s) | 97, 158, 280, 341, 402, 463 |
| VneI | GTGCAC | 1 cut(s) | 722 |
| VpaK11BI | GGWCC | 8 cut(s) | 837, 1213, 1389, 1469, 1542, 1633, 2493, 2604 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1358, 1916 |
| XapI | RAATTY | 1 cut(s) | 1009 |
| XbaI | TCTAGA | 1 cut(s) | 2545 |
| XceI | RCATGY | 2 cut(s) | 2087, 2341 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1352, 1400, 1978 |
| XhoI | CTCGAG | 1 cut(s) | 640 |
| XmaI | CCCGGG | 1 cut(s) | 2559 |
| XmiI | GTMKAC | 4 cut(s) | 689, 947, 1595, 2334 |
| XspI | CTAG | 5 cut(s) | 593, 1712, 2069, 2183, 2546 |
| ZraI | GACGTC | 2 cut(s) | 708, 2032 |
| ZrmI | AGTACT | 1 cut(s) | 646 |