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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 382, 1282 |
| AccB1I | GGYRCC | 3 cut(s) | 487, 1148, 1361 |
| AccBSI | CCGCTC | 7 cut(s) | 238, 550, 577, 790, 919, 1192, 1226 |
| AccII | CGCG | 2 cut(s) | 610, 831 |
| AclWI | GGATC | 3 cut(s) | 12, 207, 867 |
| AcoI | YGGCCR | 4 cut(s) | 189, 978, 1041, 1221 |
| AcsI | RAATTY | 1 cut(s) | 22 |
| AcuI | CTGAAG | 2 cut(s) | 622, 1007 |
| AcyI | GRCGYC | 4 cut(s) | 488, 692, 825, 1169 |
| AfaI | GTAC | 2 cut(s) | 41, 1033 |
| AflIII | ACRYGT | 1 cut(s) | 877 |
| AgsI | TTSAA | 3 cut(s) | 1055, 1063, 1138 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1377 |
| AhlI | ACTAGT | 1 cut(s) | 796 |
| AjiI | CACGTC | 2 cut(s) | 880, 1183 |
| AjnI | CCWGG | 1 cut(s) | 221 |
| AleI | CACNNNNGTG | 1 cut(s) | 147 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 539, 571 |
| AluBI | AGCT | 7 cut(s) | 642, 721, 784, 838, 943, 1022, 1232 |
| AluI | AGCT | 7 cut(s) | 642, 721, 784, 838, 943, 1022, 1232 |
| Alw21I | GWGCWC | 4 cut(s) | 723, 786, 1243, 1464 |
| Alw26I | GTCTC | 8 cut(s) | 77, 144, 390, 746, 766, 886, 1205, 1364 |
| Alw44I | GTGCAC | 1 cut(s) | 1460 |
| AlwI | GGATC | 3 cut(s) | 12, 207, 867 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 70 |
| Ama87I | CYCGRG | 5 cut(s) | 705, 785, 1116, 1350, 1389 |
| ApaI | GGGCCC | 2 cut(s) | 430, 1117 |
| ApaLI | GTGCAC | 1 cut(s) | 1460 |
| ApeKI | GCWGC | 9 cut(s) | 215, 700, 845, 907, 910, 955, 1037, 1046, 1251 |
| ApoI | RAATTY | 1 cut(s) | 22 |
| AspLEI | GCGC | 5 cut(s) | 358, 372, 457, 490, 612 |
| AsuC2I | CCSGG | 8 cut(s) | 80, 706, 707, 1117, 1118, 1205, 1351, 1352 |
| AsuHPI | GGTGA | 5 cut(s) | 85, 130, 134, 161, 1013 |
| AvaI | CYCGRG | 5 cut(s) | 705, 785, 1116, 1350, 1389 |
| AvaII | GGWCC | 4 cut(s) | 260, 1284, 1453, 1480 |
| BaeGI | GKGCMC | 3 cut(s) | 430, 1117, 1464 |
| BanI | GGYRCC | 3 cut(s) | 487, 1148, 1361 |
| BanII | GRGCYC | 4 cut(s) | 430, 723, 786, 1117 |
| BbsI | GAAGAC | 1 cut(s) | 1091 |
| Bbv12I | GWGCWC | 4 cut(s) | 723, 786, 1243, 1464 |
| BbvCI | CCTCAGC | 1 cut(s) | 1023 |
| BbvI | GCAGC | 9 cut(s) | 202, 712, 832, 894, 897, 967, 1024, 1033, 1263 |
| BccI | CCATC | 4 cut(s) | 115, 149, 573, 970 |
| BceAI | ACGGC | 5 cut(s) | 204, 393, 479, 633, 1375 |
| BciT130I | CCWGG | 1 cut(s) | 223 |
| BcnI | CCSGG | 8 cut(s) | 80, 706, 707, 1117, 1118, 1205, 1351, 1352 |
| BcoDI | GTCTC | 8 cut(s) | 77, 144, 390, 746, 766, 886, 1205, 1364 |
| BcuI | ACTAGT | 1 cut(s) | 796 |
| BfaI | CTAG | 2 cut(s) | 797, 1521 |
| BfmI | CTRYAG | 2 cut(s) | 911, 1233 |
| BfoI | RGCGCY | 3 cut(s) | 359, 458, 491 |
| Bme1390I | CCNGG | 9 cut(s) | 80, 223, 706, 707, 1117, 1118, 1205, 1351, 1352 |
| Bme18I | GGWCC | 4 cut(s) | 260, 1284, 1453, 1480 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1377 |
| BmeT110I | CYCGRG | 5 cut(s) | 705, 785, 1116, 1350, 1389 |
| BmgBI | CACGTC | 2 cut(s) | 880, 1183 |
| BmrFI | CCNGG | 9 cut(s) | 80, 223, 706, 707, 1117, 1118, 1205, 1351, 1352 |
| BmrI | ACTGGG | 2 cut(s) | 351, 1371 |
| BmsI | GCATC | 2 cut(s) | 117, 231 |
| BmuI | ACTGGG | 2 cut(s) | 351, 1371 |
| BpiI | GAAGAC | 1 cut(s) | 1091 |
| BpmI | CTGGAG | 5 cut(s) | 380, 728, 884, 1212, 1358 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1023 |
| BpuMI | CCSGG | 8 cut(s) | 80, 706, 707, 1117, 1118, 1205, 1351, 1352 |
| BsaAI | YACGTR | 1 cut(s) | 1468 |
| BsaHI | GRCGYC | 4 cut(s) | 488, 692, 825, 1169 |
| BsaI | GGTCTC | 2 cut(s) | 746, 1364 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 23, 53, 396, 426, 539, 569 |
| Bse118I | RCCGGY | 3 cut(s) | 191, 280, 1328 |
| Bse1I | ACTGG | 8 cut(s) | 100, 136, 317, 346, 759, 780, 1377, 1505 |
| BseBI | CCWGG | 1 cut(s) | 223 |
| BseGI | GGATG | 3 cut(s) | 246, 981, 1270 |
| BseMII | CTCAG | 6 cut(s) | 242, 278, 372, 1007, 1014, 1528 |
| BseNI | ACTGG | 8 cut(s) | 100, 136, 317, 346, 759, 780, 1377, 1505 |
| BseSI | GKGCMC | 3 cut(s) | 430, 1117, 1464 |
| BseX3I | CGGCCG | 2 cut(s) | 189, 1041 |
| BseXI | GCAGC | 9 cut(s) | 202, 712, 832, 894, 897, 967, 1024, 1033, 1263 |
| BseYI | CCCAGC | 6 cut(s) | 60, 580, 994, 1287, 1299, 1495 |
| BsgI | GTGCAG | 2 cut(s) | 191, 974 |
| Bsh1236I | CGCG | 2 cut(s) | 610, 831 |
| Bsh1285I | CGRYCG | 2 cut(s) | 192, 1044 |
| BshNI | GGYRCC | 3 cut(s) | 487, 1148, 1361 |
| BsiEI | CGRYCG | 2 cut(s) | 192, 1044 |
| BsiHKAI | GWGCWC | 4 cut(s) | 723, 786, 1243, 1464 |
| BsiHKCI | CYCGRG | 5 cut(s) | 705, 785, 1116, 1350, 1389 |
| BsiSI | CCGG | 9 cut(s) | 80, 113, 192, 281, 706, 1117, 1205, 1329, 1351 |
| BslFI | GGGAC | 4 cut(s) | 193, 807, 1187, 1270 |
| BsmAI | GTCTC | 8 cut(s) | 77, 144, 390, 746, 766, 886, 1205, 1364 |
| BsmBI | CGTCTC | 2 cut(s) | 77, 886 |
| BsmFI | GGGAC | 4 cut(s) | 193, 807, 1187, 1270 |
| BsmI | GAATGC | 1 cut(s) | 1058 |
| Bso31I | GGTCTC | 2 cut(s) | 746, 1364 |
| BsoBI | CYCGRG | 5 cut(s) | 705, 785, 1116, 1350, 1389 |
| Bsp120I | GGGCCC | 2 cut(s) | 426, 1113 |
| Bsp1286I | GDGCHC | 6 cut(s) | 430, 723, 786, 1117, 1243, 1464 |
| Bsp143I | GATC | 6 cut(s) | 4, 199, 502, 859, 900, 1422 |
| BspCNI | CTCAG | 6 cut(s) | 241, 277, 373, 1008, 1015, 1527 |
| BspFNI | CGCG | 2 cut(s) | 610, 831 |
| BspHI | TCATGA | 1 cut(s) | 534 |
| BspMAI | CTGCAG | 1 cut(s) | 915 |
| BspPI | GGATC | 3 cut(s) | 12, 207, 867 |
| BspQI | GCTCTTC | 1 cut(s) | 711 |
| BspT107I | GGYRCC | 3 cut(s) | 487, 1148, 1361 |
| BspTNI | GGTCTC | 2 cut(s) | 746, 1364 |
| BsrBI | CCGCTC | 7 cut(s) | 238, 550, 577, 790, 919, 1192, 1226 |
| BsrFI | RCCGGY | 3 cut(s) | 191, 280, 1328 |
| BsrI | ACTGG | 8 cut(s) | 100, 136, 317, 346, 759, 780, 1377, 1505 |
| BssAI | RCCGGY | 3 cut(s) | 191, 280, 1328 |
| BssMI | GATC | 6 cut(s) | 4, 199, 502, 859, 900, 1422 |
| BssNI | GRCGYC | 4 cut(s) | 488, 692, 825, 1169 |
| BssT1I | CCWWGG | 3 cut(s) | 145, 765, 930 |
| Bst2UI | CCWGG | 1 cut(s) | 223 |
| Bst4CI | ACNGT | 1 cut(s) | 475 |
| Bst6I | CTCTTC | 4 cut(s) | 393, 402, 566, 711 |
| BstACI | GRCGYC | 4 cut(s) | 488, 692, 825, 1169 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 467 |
| BstBAI | YACGTR | 1 cut(s) | 1468 |
| BstDEI | CTNAG | 6 cut(s) | 228, 264, 381, 1016, 1023, 1514 |
| BstDSI | CCRYGG | 1 cut(s) | 829 |
| BstEII | GGTNACC | 1 cut(s) | 1006 |
| BstF5I | GGATG | 3 cut(s) | 246, 981, 1270 |
| BstFNI | CGCG | 2 cut(s) | 610, 831 |
| BstH2I | RGCGCY | 3 cut(s) | 359, 458, 491 |
| BstHHI | GCGC | 5 cut(s) | 358, 372, 457, 490, 612 |
| BstKTI | GATC | 6 cut(s) | 7, 202, 505, 862, 903, 1425 |
| BstMAI | GTCTC | 8 cut(s) | 77, 144, 390, 746, 766, 886, 1205, 1364 |
| BstMBI | GATC | 6 cut(s) | 4, 199, 502, 859, 900, 1422 |
| BstMCI | CGRYCG | 2 cut(s) | 192, 1044 |
| BstNI | CCWGG | 1 cut(s) | 223 |
| BstNSI | RCATGY | 1 cut(s) | 1328 |
| BstPI | GGTNACC | 1 cut(s) | 1006 |
| BstSCI | CCNGG | 9 cut(s) | 78, 221, 704, 705, 1115, 1116, 1203, 1349, 1350 |
| BstSFI | CTRYAG | 2 cut(s) | 911, 1233 |
| BstSLI | GKGCMC | 3 cut(s) | 430, 1117, 1464 |
| BstUI | CGCG | 2 cut(s) | 610, 831 |
| BstV1I | GCAGC | 9 cut(s) | 202, 712, 832, 894, 897, 967, 1024, 1033, 1263 |
| BstV2I | GAAGAC | 1 cut(s) | 1091 |
| BstX2I | RGATCY | 1 cut(s) | 859 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 257 |
| BstYI | RGATCY | 1 cut(s) | 859 |
| BstZI | CGGCCG | 2 cut(s) | 189, 1041 |
| BtgI | CCRYGG | 1 cut(s) | 829 |
| BtgZI | GCGATG | 1 cut(s) | 140 |
| BtrI | CACGTC | 2 cut(s) | 880, 1183 |
| BtsCI | GGATG | 3 cut(s) | 246, 981, 1270 |
| BtsIMutI | CAGTG | 2 cut(s) | 339, 1522 |
| CaiI | CAGNNNCTG | 1 cut(s) | 70 |
| CciI | TCATGA | 1 cut(s) | 534 |
| CciNI | GCGGCCGC | 1 cut(s) | 1041 |
| CfoI | GCGC | 5 cut(s) | 358, 372, 457, 490, 612 |
| Cfr10I | RCCGGY | 3 cut(s) | 191, 280, 1328 |
| Cfr42I | CCGCGG | 1 cut(s) | 832 |
| Cfr9I | CCCGGG | 3 cut(s) | 705, 1116, 1350 |
| CseI | GACGC | 5 cut(s) | 516, 681, 833, 1096, 1158 |
| Csp6I | GTAC | 2 cut(s) | 40, 1032 |
| CviAII | CATG | 3 cut(s) | 37, 535, 1325 |
| CviQI | GTAC | 2 cut(s) | 40, 1032 |
| DdeI | CTNAG | 6 cut(s) | 228, 264, 381, 1016, 1023, 1514 |
| DinI | GGCGCC | 1 cut(s) | 489 |
| DpnI | GATC | 6 cut(s) | 6, 201, 504, 861, 902, 1424 |
| DpnII | GATC | 6 cut(s) | 4, 199, 502, 859, 900, 1422 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 382, 1282 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1377 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 382, 1282 |
| EaeI | YGGCCR | 4 cut(s) | 189, 978, 1041, 1221 |
| EagI | CGGCCG | 2 cut(s) | 189, 1041 |
| Eam1104I | CTCTTC | 4 cut(s) | 393, 402, 566, 711 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1377 |
| EarI | CTCTTC | 4 cut(s) | 393, 402, 566, 711 |
| EciI | GGCGGA | 8 cut(s) | 26, 773, 794, 821, 955, 1088, 1223, 1472 |
| Ecl136II | GAGCTC | 2 cut(s) | 721, 784 |
| EclXI | CGGCCG | 2 cut(s) | 189, 1041 |
| Eco130I | CCWWGG | 3 cut(s) | 145, 765, 930 |
| Eco24I | GRGCYC | 4 cut(s) | 430, 723, 786, 1117 |
| Eco31I | GGTCTC | 2 cut(s) | 746, 1364 |
| Eco47I | GGWCC | 4 cut(s) | 260, 1284, 1453, 1480 |
| Eco52I | CGGCCG | 2 cut(s) | 189, 1041 |
| Eco53kI | GAGCTC | 2 cut(s) | 721, 784 |
| Eco57I | CTGAAG | 2 cut(s) | 622, 1007 |
| Eco88I | CYCGRG | 5 cut(s) | 705, 785, 1116, 1350, 1389 |
| Eco91I | GGTNACC | 1 cut(s) | 1006 |
| EcoICRI | GAGCTC | 2 cut(s) | 721, 784 |
| EcoO109I | RGGNCCY | 3 cut(s) | 426, 1113, 1284 |
| EcoO65I | GGTNACC | 1 cut(s) | 1006 |
| EcoRII | CCWGG | 1 cut(s) | 221 |
| EcoT14I | CCWWGG | 3 cut(s) | 145, 765, 930 |
| EcoT38I | GRGCYC | 4 cut(s) | 430, 723, 786, 1117 |
| EgeI | GGCGCC | 1 cut(s) | 489 |
| EheI | GGCGCC | 1 cut(s) | 489 |
| ErhI | CCWWGG | 3 cut(s) | 145, 765, 930 |
| Esp3I | CGTCTC | 2 cut(s) | 77, 886 |
| FaeI | CATG | 3 cut(s) | 40, 538, 1328 |
| FaqI | GGGAC | 4 cut(s) | 193, 807, 1187, 1270 |
| FatI | CATG | 3 cut(s) | 36, 534, 1324 |
| FokI | GGATG | 3 cut(s) | 253, 988, 1257 |
| FriOI | GRGCYC | 4 cut(s) | 430, 723, 786, 1117 |
| FspBI | CTAG | 2 cut(s) | 797, 1521 |
| GlaI | GCGC | 5 cut(s) | 357, 371, 456, 489, 611 |
| GsaI | CCCAGC | 6 cut(s) | 64, 584, 998, 1291, 1303, 1499 |
| GsuI | CTGGAG | 5 cut(s) | 380, 728, 884, 1212, 1358 |
| HaeII | RGCGCY | 3 cut(s) | 359, 458, 491 |
| HapII | CCGG | 9 cut(s) | 80, 113, 192, 281, 706, 1117, 1205, 1329, 1351 |
| HgaI | GACGC | 5 cut(s) | 516, 681, 833, 1096, 1158 |
| HhaI | GCGC | 5 cut(s) | 358, 372, 457, 490, 612 |
| Hin1I | GRCGYC | 4 cut(s) | 488, 692, 825, 1169 |
| Hin1II | CATG | 3 cut(s) | 40, 538, 1328 |
| Hin6I | GCGC | 5 cut(s) | 356, 370, 455, 488, 610 |
| HinP1I | GCGC | 5 cut(s) | 356, 370, 455, 488, 610 |
| HindIII | AAGCTT | 1 cut(s) | 836 |
| HinfI | GANTC | 4 cut(s) | 67, 383, 509, 962 |
| HpaII | CCGG | 9 cut(s) | 80, 113, 192, 281, 706, 1117, 1205, 1329, 1351 |
| HphI | GGTGA | 5 cut(s) | 85, 130, 134, 161, 1013 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 1462 |
| Hpy188III | TCNNGA | 6 cut(s) | 389, 506, 535, 745, 863, 1337 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 1462 |
| Hpy99I | CGWCG | 5 cut(s) | 331, 619, 1279, 1315, 1491 |
| HpyAV | CCTTC | 8 cut(s) | 226, 262, 436, 523, 536, 646, 1138, 1274 |
| HpyCH4III | ACNGT | 1 cut(s) | 475 |
| HpyCH4IV | ACGT | 4 cut(s) | 86, 879, 1182, 1467 |
| HpyCH4V | TGCA | 6 cut(s) | 172, 461, 913, 955, 1163, 1462 |
| HpyF3I | CTNAG | 6 cut(s) | 228, 264, 381, 1016, 1023, 1514 |
| HpySE526I | ACGT | 4 cut(s) | 86, 879, 1182, 1467 |
| Hsp92I | GRCGYC | 4 cut(s) | 488, 692, 825, 1169 |
| Hsp92II | CATG | 3 cut(s) | 40, 538, 1328 |
| HspAI | GCGC | 5 cut(s) | 356, 370, 455, 488, 610 |
| KasI | GGCGCC | 1 cut(s) | 487 |
| KflI | GGGWCCC | 1 cut(s) | 1284 |
| KroI | GCCGGC | 2 cut(s) | 191, 280 |
| KroNI | GCCGGC | 2 cut(s) | 193, 282 |
| KspI | CCGCGG | 1 cut(s) | 832 |
| Kzo9I | GATC | 6 cut(s) | 4, 199, 502, 859, 900, 1422 |
| LguI | GCTCTTC | 1 cut(s) | 711 |
| LmnI | GCTCC | 6 cut(s) | 235, 547, 781, 892, 916, 1231 |
| Lsp1109I | GCAGC | 9 cut(s) | 202, 712, 832, 894, 897, 967, 1024, 1033, 1263 |
| LweI | GCATC | 2 cut(s) | 117, 231 |
| MaeI | CTAG | 2 cut(s) | 797, 1521 |
| MaeII | ACGT | 4 cut(s) | 86, 879, 1182, 1467 |
| MaeIII | GTNAC | 6 cut(s) | 298, 669, 1006, 1170, 1320, 1529 |
| MalI | GATC | 6 cut(s) | 6, 201, 504, 861, 902, 1424 |
| MbiI | CCGCTC | 7 cut(s) | 238, 550, 577, 790, 919, 1192, 1226 |
| MboI | GATC | 6 cut(s) | 4, 199, 502, 859, 900, 1422 |
| MboII | GAAGA | 6 cut(s) | 164, 410, 419, 553, 728, 1096 |
| MfeI | CAATTG | 1 cut(s) | 621 |
| MflI | RGATCY | 1 cut(s) | 859 |
| MhlI | GDGCHC | 6 cut(s) | 430, 723, 786, 1117, 1243, 1464 |
| MluCI | AATT | 4 cut(s) | 22, 621, 1442, 1546 |
| Mly113I | GGCGCC | 1 cut(s) | 488 |
| MlyI | GAGTC | 4 cut(s) | 61, 392, 503, 971 |
| MmeI | TCCRAC | 4 cut(s) | 870, 1293, 1298, 1406 |
| MroNI | GCCGGC | 2 cut(s) | 191, 280 |
| MseI | TTAA | 4 cut(s) | 840, 1080, 1436, 1445 |
| MslI | CAYNNNNRTG | 2 cut(s) | 147, 950 |
| MspA1I | CMGCKG | 6 cut(s) | 831, 958, 1037, 1046, 1232, 1254 |
| MspI | CCGG | 9 cut(s) | 80, 113, 192, 281, 706, 1117, 1205, 1329, 1351 |
| MspR9I | CCNGG | 9 cut(s) | 80, 223, 706, 707, 1117, 1118, 1205, 1351, 1352 |
| MunI | CAATTG | 1 cut(s) | 621 |
| Mva1269I | GAATGC | 1 cut(s) | 1058 |
| MvaI | CCWGG | 1 cut(s) | 223 |
| MvnI | CGCG | 2 cut(s) | 610, 831 |
| NaeI | GCCGGC | 2 cut(s) | 193, 282 |
| NarI | GGCGCC | 1 cut(s) | 488 |
| NciI | CCSGG | 8 cut(s) | 80, 706, 707, 1117, 1118, 1205, 1351, 1352 |
| NdeII | GATC | 6 cut(s) | 4, 199, 502, 859, 900, 1422 |
| NgoMIV | GCCGGC | 2 cut(s) | 191, 280 |
| NlaIII | CATG | 3 cut(s) | 40, 538, 1328 |
| NmeAIII | GCCGAG | 3 cut(s) | 70, 544, 623 |
| NmuCI | GTSAC | 3 cut(s) | 298, 1170, 1320 |
| NotI | GCGGCCGC | 1 cut(s) | 1041 |
| NspI | RCATGY | 1 cut(s) | 1328 |
| OliI | CACNNNNGTG | 1 cut(s) | 147 |
| PaeR7I | CTCGAG | 1 cut(s) | 785 |
| PagI | TCATGA | 1 cut(s) | 534 |
| PciSI | GCTCTTC | 1 cut(s) | 711 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 681 |
| PctI | GAATGC | 1 cut(s) | 1058 |
| PdiI | GCCGGC | 2 cut(s) | 193, 282 |
| PflFI | GACNNNGTC | 2 cut(s) | 1309, 1478 |
| PleI | GAGTC | 4 cut(s) | 61, 391, 503, 970 |
| PluTI | GGCGCC | 1 cut(s) | 491 |
| PpsI | GAGTC | 4 cut(s) | 61, 391, 503, 970 |
| Ppu21I | YACGTR | 1 cut(s) | 1468 |
| PpuMI | RGGWCCY | 1 cut(s) | 1284 |
| Psp124BI | GAGCTC | 2 cut(s) | 723, 786 |
| Psp5II | RGGWCCY | 1 cut(s) | 1284 |
| Psp6I | CCWGG | 1 cut(s) | 221 |
| PspEI | GGTNACC | 1 cut(s) | 1006 |
| PspFI | CCCAGC | 6 cut(s) | 60, 580, 994, 1287, 1299, 1495 |
| PspGI | CCWGG | 1 cut(s) | 221 |
| PspOMI | GGGCCC | 2 cut(s) | 426, 1113 |
| PspPPI | RGGWCCY | 1 cut(s) | 1284 |
| PspXI | VCTCGAGB | 1 cut(s) | 785 |
| PstI | CTGCAG | 1 cut(s) | 915 |
| PstNI | CAGNNNCTG | 1 cut(s) | 70 |
| PsuI | RGATCY | 1 cut(s) | 859 |
| PsyI | GACNNNGTC | 2 cut(s) | 1309, 1478 |
| PvuII | CAGCTG | 1 cut(s) | 1232 |
| RsaI | GTAC | 2 cut(s) | 41, 1033 |
| RsaNI | GTAC | 2 cut(s) | 40, 1032 |
| RseI | CAYNNNNRTG | 2 cut(s) | 147, 950 |
| SacI | GAGCTC | 2 cut(s) | 723, 786 |
| SacII | CCGCGG | 1 cut(s) | 832 |
| SapI | GCTCTTC | 1 cut(s) | 711 |
| SaqAI | TTAA | 4 cut(s) | 840, 1080, 1436, 1445 |
| Sau3AI | GATC | 6 cut(s) | 4, 199, 502, 859, 900, 1422 |
| SchI | GAGTC | 4 cut(s) | 61, 392, 503, 971 |
| ScrFI | CCNGG | 9 cut(s) | 80, 223, 706, 707, 1117, 1118, 1205, 1351, 1352 |
| SduI | GDGCHC | 6 cut(s) | 430, 723, 786, 1117, 1243, 1464 |
| SfaNI | GCATC | 2 cut(s) | 117, 231 |
| SfcI | CTRYAG | 2 cut(s) | 911, 1233 |
| SfoI | GGCGCC | 1 cut(s) | 489 |
| Sfr274I | CTCGAG | 1 cut(s) | 785 |
| Sfr303I | CCGCGG | 1 cut(s) | 832 |
| SgrBI | CCGCGG | 1 cut(s) | 832 |
| SinI | GGWCC | 4 cut(s) | 260, 1284, 1453, 1480 |
| SlaI | CTCGAG | 1 cut(s) | 785 |
| SmaI | CCCGGG | 3 cut(s) | 707, 1118, 1352 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 147, 950 |
| SmlI | CTYRAG | 1 cut(s) | 785 |
| SmoI | CTYRAG | 1 cut(s) | 785 |
| SpeI | ACTAGT | 1 cut(s) | 796 |
| SrfI | GCCCGGGC | 1 cut(s) | 1118 |
| Sse9I | AATT | 4 cut(s) | 22, 621, 1442, 1546 |
| SspDI | GGCGCC | 1 cut(s) | 487 |
| SspMI | CTAG | 2 cut(s) | 797, 1521 |
| SstI | GAGCTC | 2 cut(s) | 723, 786 |
| StyD4I | CCNGG | 9 cut(s) | 78, 221, 704, 705, 1115, 1116, 1203, 1349, 1350 |
| StyI | CCWWGG | 3 cut(s) | 145, 765, 930 |
| TaaI | ACNGT | 1 cut(s) | 475 |
| TaiI | ACGT | 4 cut(s) | 89, 882, 1185, 1470 |
| TaqI | TCGA | 2 cut(s) | 786, 1194 |
| TaqII | GACCGA | 1 cut(s) | 1109 |
| TasI | AATT | 4 cut(s) | 22, 621, 1442, 1546 |
| Tru1I | TTAA | 4 cut(s) | 840, 1080, 1436, 1445 |
| Tru9I | TTAA | 4 cut(s) | 840, 1080, 1436, 1445 |
| TscAI | CASTG | 2 cut(s) | 346, 1522 |
| TseFI | GTSAC | 3 cut(s) | 298, 1170, 1320 |
| TseI | GCWGC | 9 cut(s) | 215, 700, 845, 907, 910, 955, 1037, 1046, 1251 |
| Tsp45I | GTSAC | 3 cut(s) | 298, 1170, 1320 |
| TspDTI | ATGAA | 3 cut(s) | 523, 888, 1547 |
| TspGWI | ACGGA | 1 cut(s) | 1292 |
| TspMI | CCCGGG | 3 cut(s) | 705, 1116, 1350 |
| TspRI | CASTG | 2 cut(s) | 346, 1522 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1309, 1478 |
| VneI | GTGCAC | 1 cut(s) | 1460 |
| VpaK11BI | GGWCC | 4 cut(s) | 260, 1284, 1453, 1480 |
| XapI | RAATTY | 1 cut(s) | 22 |
| XceI | RCATGY | 1 cut(s) | 1328 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 143, 772 |
| XhoI | CTCGAG | 1 cut(s) | 785 |
| XmaI | CCCGGG | 3 cut(s) | 705, 1116, 1350 |
| XspI | CTAG | 2 cut(s) | 797, 1521 |