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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 275, 392 |
| AccB1I | GGYRCC | 4 cut(s) | 203, 220, 275, 392 |
| AccBSI | CCGCTC | 1 cut(s) | 282 |
| AccIII | TCCGGA | 1 cut(s) | 310 |
| AclWI | GGATC | 3 cut(s) | 115, 128, 433 |
| AcoI | YGGCCR | 3 cut(s) | 15, 132, 210 |
| AcuI | CTGAAG | 1 cut(s) | 29 |
| AfaI | GTAC | 3 cut(s) | 277, 358, 394 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 49, 130, 230, 346, 382, 464 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 408 |
| AjnI | CCWGG | 4 cut(s) | 105, 207, 227, 380 |
| AluBI | AGCT | 1 cut(s) | 181 |
| AluI | AGCT | 1 cut(s) | 181 |
| Alw21I | GWGCWC | 1 cut(s) | 238 |
| Alw26I | GTCTC | 2 cut(s) | 357, 395 |
| AlwI | GGATC | 3 cut(s) | 115, 128, 433 |
| Ama87I | CYCGRG | 1 cut(s) | 283 |
| Aor13HI | TCCGGA | 1 cut(s) | 310 |
| AoxI | GGCC | 6 cut(s) | 15, 132, 198, 210, 256, 373 |
| Asp718I | GGTACC | 2 cut(s) | 275, 392 |
| AspLEI | GCGC | 1 cut(s) | 305 |
| AspS9I | GGNCC | 3 cut(s) | 257, 330, 373 |
| AsuC2I | CCSGG | 1 cut(s) | 361 |
| AsuHPI | GGTGA | 1 cut(s) | 104 |
| AvaI | CYCGRG | 1 cut(s) | 283 |
| AvaII | GGWCC | 1 cut(s) | 330 |
| BaeGI | GKGCMC | 1 cut(s) | 208 |
| BalI | TGGCCA | 1 cut(s) | 212 |
| BamHI | GGATCC | 1 cut(s) | 120 |
| BanI | GGYRCC | 4 cut(s) | 203, 220, 275, 392 |
| Bbv12I | GWGCWC | 1 cut(s) | 238 |
| BbvCI | CCTCAGC | 1 cut(s) | 72 |
| BccI | CCATC | 4 cut(s) | 110, 247, 266, 383 |
| BceAI | ACGGC | 1 cut(s) | 98 |
| BciT130I | CCWGG | 4 cut(s) | 107, 209, 229, 382 |
| BcnI | CCSGG | 1 cut(s) | 361 |
| BcoDI | GTCTC | 2 cut(s) | 357, 395 |
| BfaI | CTAG | 1 cut(s) | 63 |
| BfmI | CTRYAG | 1 cut(s) | 414 |
| BfoI | RGCGCY | 1 cut(s) | 306 |
| BisI | GCNGC | 7 cut(s) | 18, 60, 132, 135, 138, 192, 442 |
| BlsI | GCNGC | 7 cut(s) | 19, 61, 133, 136, 139, 193, 443 |
| Bme1390I | CCNGG | 5 cut(s) | 107, 209, 229, 361, 382 |
| Bme18I | GGWCC | 1 cut(s) | 330 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 408 |
| BmeT110I | CYCGRG | 1 cut(s) | 283 |
| BmgT120I | GGNCC | 3 cut(s) | 257, 330, 373 |
| BmiI | GGNNCC | 7 cut(s) | 122, 205, 222, 259, 277, 332, 394 |
| BmrFI | CCNGG | 5 cut(s) | 107, 209, 229, 361, 382 |
| BmrI | ACTGGG | 2 cut(s) | 334, 402 |
| BmuI | ACTGGG | 2 cut(s) | 334, 402 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 305, 337 |
| BpmI | CTGGAG | 3 cut(s) | 107, 128, 486 |
| Bpu10I | CCTNAGC | 1 cut(s) | 72 |
| BpuMI | CCSGG | 1 cut(s) | 361 |
| BsaI | GGTCTC | 1 cut(s) | 395 |
| BsaJI | CCNNGG | 4 cut(s) | 21, 207, 228, 381 |
| BsaWI | WCCGGW | 2 cut(s) | 310, 457 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 49, 130, 230, 346, 382, 464 |
| Bse118I | RCCGGY | 1 cut(s) | 200 |
| Bse1I | ACTGG | 3 cut(s) | 340, 408, 420 |
| BseAI | TCCGGA | 1 cut(s) | 310 |
| BseBI | CCWGG | 4 cut(s) | 107, 209, 229, 382 |
| BseDI | CCNNGG | 4 cut(s) | 21, 207, 228, 381 |
| BseGI | GGATG | 2 cut(s) | 322, 394 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 49, 130, 230, 346, 382, 464 |
| BseMII | CTCAG | 1 cut(s) | 63 |
| BseNI | ACTGG | 3 cut(s) | 340, 408, 420 |
| BseRI | GAGGAG | 1 cut(s) | 362 |
| BseSI | GKGCMC | 1 cut(s) | 208 |
| BseX3I | CGGCCG | 1 cut(s) | 132 |
| BseYI | CCCAGC | 1 cut(s) | 324 |
| Bsh1285I | CGRYCG | 1 cut(s) | 135 |
| BshFI | GGCC | 6 cut(s) | 17, 134, 200, 212, 258, 375 |
| BshNI | GGYRCC | 4 cut(s) | 203, 220, 275, 392 |
| BsiEI | CGRYCG | 1 cut(s) | 135 |
| BsiHKAI | GWGCWC | 1 cut(s) | 238 |
| BsiHKCI | CYCGRG | 1 cut(s) | 283 |
| BsiSI | CCGG | 4 cut(s) | 201, 311, 360, 458 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 49, 130, 230, 346, 382, 464 |
| BsmAI | GTCTC | 2 cut(s) | 357, 395 |
| BsnI | GGCC | 6 cut(s) | 17, 134, 200, 212, 258, 375 |
| Bso31I | GGTCTC | 1 cut(s) | 395 |
| BsoBI | CYCGRG | 1 cut(s) | 283 |
| Bsp1286I | GDGCHC | 2 cut(s) | 208, 238 |
| Bsp13I | TCCGGA | 1 cut(s) | 310 |
| Bsp143I | GATC | 3 cut(s) | 7, 120, 425 |
| BspANI | GGCC | 6 cut(s) | 17, 134, 200, 212, 258, 375 |
| BspCNI | CTCAG | 1 cut(s) | 64 |
| BspEI | TCCGGA | 1 cut(s) | 310 |
| BspLI | GGNNCC | 7 cut(s) | 122, 205, 222, 259, 277, 332, 394 |
| BspPI | GGATC | 3 cut(s) | 115, 128, 433 |
| BspT107I | GGYRCC | 4 cut(s) | 203, 220, 275, 392 |
| BspTNI | GGTCTC | 1 cut(s) | 395 |
| BsrBI | CCGCTC | 1 cut(s) | 282 |
| BsrFI | RCCGGY | 1 cut(s) | 200 |
| BsrI | ACTGG | 3 cut(s) | 340, 408, 420 |
| BssAI | RCCGGY | 1 cut(s) | 200 |
| BssECI | CCNNGG | 4 cut(s) | 21, 207, 228, 381 |
| BssMI | GATC | 3 cut(s) | 7, 120, 425 |
| BssT1I | CCWWGG | 1 cut(s) | 21 |
| Bst2UI | CCWGG | 4 cut(s) | 107, 209, 229, 382 |
| BstC8I | GCNNGC | 3 cut(s) | 103, 225, 373 |
| BstDEI | CTNAG | 1 cut(s) | 72 |
| BstF5I | GGATG | 2 cut(s) | 322, 394 |
| BstH2I | RGCGCY | 1 cut(s) | 306 |
| BstHHI | GCGC | 1 cut(s) | 305 |
| BstKTI | GATC | 3 cut(s) | 10, 123, 428 |
| BstMAI | GTCTC | 2 cut(s) | 357, 395 |
| BstMBI | GATC | 3 cut(s) | 7, 120, 425 |
| BstMCI | CGRYCG | 1 cut(s) | 135 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 68, 137, 197, 233, 242, 288, 500 |
| BstNI | CCWGG | 4 cut(s) | 107, 209, 229, 382 |
| BstSCI | CCNGG | 5 cut(s) | 105, 207, 227, 359, 380 |
| BstSFI | CTRYAG | 1 cut(s) | 414 |
| BstSLI | GKGCMC | 1 cut(s) | 208 |
| BstX2I | RGATCY | 2 cut(s) | 120, 425 |
| BstYI | RGATCY | 2 cut(s) | 120, 425 |
| BstZI | CGGCCG | 1 cut(s) | 132 |
| BsuRI | GGCC | 6 cut(s) | 17, 134, 200, 212, 258, 375 |
| BtsCI | GGATG | 2 cut(s) | 322, 394 |
| BtsI | GCAGTG | 1 cut(s) | 126 |
| BtsIMutI | CAGTG | 2 cut(s) | 126, 427 |
| Cac8I | GCNNGC | 3 cut(s) | 103, 225, 373 |
| CciNI | GCGGCCGC | 1 cut(s) | 132 |
| CfoI | GCGC | 1 cut(s) | 305 |
| Cfr10I | RCCGGY | 1 cut(s) | 200 |
| Cfr13I | GGNCC | 3 cut(s) | 257, 330, 373 |
| CseI | GACGC | 1 cut(s) | 470 |
| Csp6I | GTAC | 3 cut(s) | 276, 357, 393 |
| CviAII | CATG | 1 cut(s) | 266 |
| CviQI | GTAC | 3 cut(s) | 276, 357, 393 |
| DdeI | CTNAG | 1 cut(s) | 72 |
| DpnI | GATC | 3 cut(s) | 9, 122, 427 |
| DpnII | GATC | 3 cut(s) | 7, 120, 425 |
| DriI | GACNNNNNGTC | 1 cut(s) | 408 |
| EaeI | YGGCCR | 3 cut(s) | 15, 132, 210 |
| EagI | CGGCCG | 1 cut(s) | 132 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 408 |
| EciI | GGCGGA | 1 cut(s) | 401 |
| EclXI | CGGCCG | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 1 cut(s) | 21 |
| Eco31I | GGTCTC | 1 cut(s) | 395 |
| Eco47I | GGWCC | 1 cut(s) | 330 |
| Eco52I | CGGCCG | 1 cut(s) | 132 |
| Eco57I | CTGAAG | 1 cut(s) | 29 |
| Eco88I | CYCGRG | 1 cut(s) | 283 |
| EcoRII | CCWGG | 4 cut(s) | 105, 207, 227, 380 |
| EcoT14I | CCWWGG | 1 cut(s) | 21 |
| ErhI | CCWWGG | 1 cut(s) | 21 |
| FaeI | CATG | 1 cut(s) | 269 |
| FaiI | YATR | 5 cut(s) | 151, 171, 267, 378, 398 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 289, 321, 483 |
| FatI | CATG | 1 cut(s) | 265 |
| FauI | CCCGC | 4 cut(s) | 42, 284, 287, 364 |
| Fnu4HI | GCNGC | 7 cut(s) | 18, 60, 132, 135, 138, 192, 442 |
| FokI | GGATG | 2 cut(s) | 329, 401 |
| Fsp4HI | GCNGC | 7 cut(s) | 18, 60, 132, 135, 138, 192, 442 |
| FspBI | CTAG | 1 cut(s) | 63 |
| GlaI | GCGC | 1 cut(s) | 304 |
| GluI | GCNGC | 7 cut(s) | 18, 60, 132, 135, 138, 192, 442 |
| GsaI | CCCAGC | 1 cut(s) | 328 |
| GsuI | CTGGAG | 3 cut(s) | 107, 128, 486 |
| HaeII | RGCGCY | 1 cut(s) | 306 |
| HaeIII | GGCC | 6 cut(s) | 17, 134, 200, 212, 258, 375 |
| HapII | CCGG | 4 cut(s) | 201, 311, 360, 458 |
| HgaI | GACGC | 1 cut(s) | 470 |
| HhaI | GCGC | 1 cut(s) | 305 |
| Hin1II | CATG | 1 cut(s) | 269 |
| Hin6I | GCGC | 1 cut(s) | 303 |
| HinP1I | GCGC | 1 cut(s) | 303 |
| HinfI | GANTC | 4 cut(s) | 53, 146, 320, 350 |
| HpaII | CCGG | 4 cut(s) | 201, 311, 360, 458 |
| HphI | GGTGA | 1 cut(s) | 104 |
| Hpy188I | TCNGA | 2 cut(s) | 346, 430 |
| Hpy188III | TCNNGA | 1 cut(s) | 311 |
| HpyAV | CCTTC | 5 cut(s) | 25, 53, 169, 190, 476 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 68, 137, 197, 233, 242, 288, 500 |
| HpyF3I | CTNAG | 1 cut(s) | 72 |
| Hsp92II | CATG | 1 cut(s) | 269 |
| HspAI | GCGC | 1 cut(s) | 303 |
| Kpn2I | TCCGGA | 1 cut(s) | 310 |
| KpnI | GGTACC | 2 cut(s) | 279, 396 |
| Kzo9I | GATC | 3 cut(s) | 7, 120, 425 |
| LmnI | GCTCC | 2 cut(s) | 178, 241 |
| MaeI | CTAG | 1 cut(s) | 63 |
| MalI | GATC | 3 cut(s) | 9, 122, 427 |
| MbiI | CCGCTC | 1 cut(s) | 282 |
| MboI | GATC | 3 cut(s) | 7, 120, 425 |
| MflI | RGATCY | 2 cut(s) | 120, 425 |
| MhlI | GDGCHC | 2 cut(s) | 208, 238 |
| MlsI | TGGCCA | 1 cut(s) | 212 |
| MluNI | TGGCCA | 1 cut(s) | 212 |
| MlyI | GAGTC | 4 cut(s) | 62, 155, 314, 359 |
| MmeI | TCCRAC | 1 cut(s) | 324 |
| MnlI | CCTC | 7 cut(s) | 67, 82, 103, 271, 307, 340, 461 |
| Mox20I | TGGCCA | 1 cut(s) | 212 |
| MroI | TCCGGA | 1 cut(s) | 310 |
| MscI | TGGCCA | 1 cut(s) | 212 |
| MseI | TTAA | 2 cut(s) | 36, 78 |
| MslI | CAYNNNNRTG | 1 cut(s) | 270 |
| Msp20I | TGGCCA | 1 cut(s) | 212 |
| MspA1I | CMGCKG | 3 cut(s) | 49, 140, 328 |
| MspI | CCGG | 4 cut(s) | 201, 311, 360, 458 |
| MspR9I | CCNGG | 5 cut(s) | 107, 209, 229, 361, 382 |
| MvaI | CCWGG | 4 cut(s) | 107, 209, 229, 382 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 68, 137, 197, 233, 242, 288, 500 |
| NciI | CCSGG | 1 cut(s) | 361 |
| NdeII | GATC | 3 cut(s) | 7, 120, 425 |
| NlaIII | CATG | 1 cut(s) | 269 |
| NlaIV | GGNNCC | 7 cut(s) | 122, 205, 222, 259, 277, 332, 394 |
| NotI | GCGGCCGC | 1 cut(s) | 132 |
| PkrI | GCNGC | 7 cut(s) | 19, 61, 133, 136, 139, 193, 443 |
| PleI | GAGTC | 4 cut(s) | 61, 154, 314, 358 |
| PpsI | GAGTC | 4 cut(s) | 61, 154, 314, 358 |
| Psp6I | CCWGG | 4 cut(s) | 105, 207, 227, 380 |
| PspFI | CCCAGC | 1 cut(s) | 324 |
| PspGI | CCWGG | 4 cut(s) | 105, 207, 227, 380 |
| PspN4I | GGNNCC | 7 cut(s) | 122, 205, 222, 259, 277, 332, 394 |
| PspPI | GGNCC | 3 cut(s) | 257, 330, 373 |
| PsuI | RGATCY | 2 cut(s) | 120, 425 |
| RsaI | GTAC | 3 cut(s) | 277, 358, 394 |
| RsaNI | GTAC | 3 cut(s) | 276, 357, 393 |
| RseI | CAYNNNNRTG | 1 cut(s) | 270 |
| SaqAI | TTAA | 2 cut(s) | 36, 78 |
| SatI | GCNGC | 7 cut(s) | 18, 60, 132, 135, 138, 192, 442 |
| Sau3AI | GATC | 3 cut(s) | 7, 120, 425 |
| Sau96I | GGNCC | 3 cut(s) | 257, 330, 373 |
| SchI | GAGTC | 4 cut(s) | 62, 155, 314, 359 |
| ScrFI | CCNGG | 5 cut(s) | 107, 209, 229, 361, 382 |
| SduI | GDGCHC | 2 cut(s) | 208, 238 |
| SetI | ASST | 6 cut(s) | 36, 78, 183, 383, 472, 501 |
| SfcI | CTRYAG | 1 cut(s) | 414 |
| SinI | GGWCC | 1 cut(s) | 330 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 270 |
| SspMI | CTAG | 1 cut(s) | 63 |
| StyD4I | CCNGG | 5 cut(s) | 105, 207, 227, 359, 380 |
| StyI | CCWWGG | 1 cut(s) | 21 |
| TaqII | GACCGA | 1 cut(s) | 200 |
| TauI | GCSGC | 7 cut(s) | 20, 62, 134, 137, 140, 194, 444 |
| Tru1I | TTAA | 2 cut(s) | 36, 78 |
| Tru9I | TTAA | 2 cut(s) | 36, 78 |
| TscAI | CASTG | 2 cut(s) | 133, 427 |
| TspRI | CASTG | 2 cut(s) | 133, 427 |
| VpaK11BI | GGWCC | 1 cut(s) | 330 |
| XspI | CTAG | 1 cut(s) | 63 |