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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 382, 1285 |
| Acc65I | GGTACC | 2 cut(s) | 1241, 1364 |
| AccB1I | GGYRCC | 4 cut(s) | 487, 1148, 1241, 1364 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 580 |
| AccBSI | CCGCTC | 4 cut(s) | 238, 550, 790, 919 |
| AccI | GTMKAC | 1 cut(s) | 507 |
| AccII | CGCG | 3 cut(s) | 527, 1329, 1424 |
| AclWI | GGATC | 1 cut(s) | 207 |
| AcoI | YGGCCR | 2 cut(s) | 978, 1041 |
| AcuI | CTGAAG | 2 cut(s) | 622, 1044 |
| AcyI | GRCGYC | 4 cut(s) | 488, 692, 825, 1149 |
| AfaI | GTAC | 4 cut(s) | 524, 1033, 1243, 1366 |
| AfeI | AGCGCT | 1 cut(s) | 214 |
| AflIII | ACRYGT | 2 cut(s) | 877, 1131 |
| AgsI | TTSAA | 5 cut(s) | 1055, 1063, 1081, 1138, 1439 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1380 |
| AjiI | CACGTC | 1 cut(s) | 880 |
| AjnI | CCWGG | 1 cut(s) | 1109 |
| AleI | CACNNNNGTG | 2 cut(s) | 147, 255 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 539, 571 |
| AluBI | AGCT | 4 cut(s) | 642, 721, 838, 1235 |
| AluI | AGCT | 4 cut(s) | 642, 721, 838, 1235 |
| Alw21I | GWGCWC | 1 cut(s) | 723 |
| AlwI | GGATC | 1 cut(s) | 207 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 580 |
| Ama87I | CYCGRG | 5 cut(s) | 643, 722, 1116, 1353, 1392 |
| Aor51HI | AGCGCT | 1 cut(s) | 214 |
| ApaI | GGGCCC | 2 cut(s) | 430, 1117 |
| ApeKI | GCWGC | 6 cut(s) | 215, 700, 831, 955, 1037, 1254 |
| Asp718I | GGTACC | 2 cut(s) | 1241, 1364 |
| AspLEI | GCGC | 8 cut(s) | 215, 358, 372, 490, 529, 1151, 1331, 1426 |
| AsuC2I | CCSGG | 7 cut(s) | 8, 80, 196, 706, 1208, 1354, 1355 |
| AsuHPI | GGTGA | 9 cut(s) | 85, 130, 134, 161, 337, 487, 512, 1013, 1295 |
| AvaI | CYCGRG | 5 cut(s) | 643, 722, 1116, 1353, 1392 |
| AvaII | GGWCC | 3 cut(s) | 4, 260, 1398 |
| AxyI | CCTNAGG | 1 cut(s) | 1016 |
| BaeGI | GKGCMC | 3 cut(s) | 430, 1117, 1206 |
| BanI | GGYRCC | 4 cut(s) | 487, 1148, 1241, 1364 |
| BanII | GRGCYC | 3 cut(s) | 430, 723, 1117 |
| BbsI | GAAGAC | 2 cut(s) | 470, 1091 |
| Bbv12I | GWGCWC | 1 cut(s) | 723 |
| BbvI | GCAGC | 6 cut(s) | 202, 712, 843, 967, 1024, 1266 |
| BccI | CCATC | 5 cut(s) | 149, 573, 857, 970, 1355 |
| BceAI | ACGGC | 4 cut(s) | 393, 417, 479, 633 |
| BciT130I | CCWGG | 1 cut(s) | 1111 |
| BcnI | CCSGG | 7 cut(s) | 8, 80, 196, 706, 1208, 1354, 1355 |
| BfmI | CTRYAG | 1 cut(s) | 911 |
| BfoI | RGCGCY | 5 cut(s) | 216, 359, 373, 491, 1152 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 452 |
| BmcAI | AGTACT | 1 cut(s) | 1033 |
| Bme1390I | CCNGG | 8 cut(s) | 8, 80, 196, 706, 1111, 1208, 1354, 1355 |
| Bme18I | GGWCC | 3 cut(s) | 4, 260, 1398 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1380 |
| BmeT110I | CYCGRG | 5 cut(s) | 643, 722, 1116, 1353, 1392 |
| BmgBI | CACGTC | 1 cut(s) | 880 |
| BmrFI | CCNGG | 8 cut(s) | 8, 80, 196, 706, 1111, 1208, 1354, 1355 |
| BmrI | ACTGGG | 1 cut(s) | 1374 |
| BmsI | GCATC | 4 cut(s) | 111, 117, 231, 1282 |
| BmuI | ACTGGG | 1 cut(s) | 1374 |
| BoxI | GACNNNNGTC | 2 cut(s) | 332, 1217 |
| BpiI | GAAGAC | 2 cut(s) | 470, 1091 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 494, 526 |
| BpmI | CTGGAG | 4 cut(s) | 380, 728, 1257, 1361 |
| BpuMI | CCSGG | 7 cut(s) | 8, 80, 196, 706, 1208, 1354, 1355 |
| BsaHI | GRCGYC | 4 cut(s) | 488, 692, 825, 1149 |
| BsaI | GGTCTC | 3 cut(s) | 26, 746, 1367 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 23, 53, 396, 426, 539, 569 |
| Bse118I | RCCGGY | 2 cut(s) | 280, 1046 |
| Bse1I | ACTGG | 6 cut(s) | 57, 100, 136, 317, 780, 1380 |
| Bse21I | CCTNAGG | 1 cut(s) | 1016 |
| BseBI | CCWGG | 1 cut(s) | 1111 |
| BseGI | GGATG | 6 cut(s) | 160, 246, 981, 1273, 1324, 1366 |
| BseMII | CTCAG | 3 cut(s) | 197, 372, 1007 |
| BseNI | ACTGG | 6 cut(s) | 57, 100, 136, 317, 780, 1380 |
| BseRI | GAGGAG | 2 cut(s) | 323, 1290 |
| BseSI | GKGCMC | 3 cut(s) | 430, 1117, 1206 |
| BseX3I | CGGCCG | 1 cut(s) | 1041 |
| BseXI | GCAGC | 6 cut(s) | 202, 712, 843, 967, 1024, 1266 |
| BseYI | CCCAGC | 4 cut(s) | 60, 341, 580, 1231 |
| BsgI | GTGCAG | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 3 cut(s) | 527, 1329, 1424 |
| Bsh1285I | CGRYCG | 4 cut(s) | 192, 1044, 1418, 1422 |
| BshNI | GGYRCC | 4 cut(s) | 487, 1148, 1241, 1364 |
| BsiEI | CGRYCG | 4 cut(s) | 192, 1044, 1418, 1422 |
| BsiHKAI | GWGCWC | 1 cut(s) | 723 |
| BsiHKCI | CYCGRG | 5 cut(s) | 643, 722, 1116, 1353, 1392 |
| BslFI | GGGAC | 3 cut(s) | 63, 193, 872 |
| BsmBI | CGTCTC | 3 cut(s) | 77, 399, 886 |
| BsmFI | GGGAC | 3 cut(s) | 63, 193, 872 |
| Bso31I | GGTCTC | 3 cut(s) | 26, 746, 1367 |
| BsoBI | CYCGRG | 5 cut(s) | 643, 722, 1116, 1353, 1392 |
| Bsp120I | GGGCCC | 2 cut(s) | 426, 1113 |
| Bsp1286I | GDGCHC | 4 cut(s) | 430, 723, 1117, 1206 |
| Bsp143I | GATC | 4 cut(s) | 199, 900, 1402, 1415 |
| BspCNI | CTCAG | 3 cut(s) | 196, 373, 1008 |
| BspFNI | CGCG | 3 cut(s) | 527, 1329, 1424 |
| BspMAI | CTGCAG | 1 cut(s) | 915 |
| BspPI | GGATC | 1 cut(s) | 207 |
| BspQI | GCTCTTC | 1 cut(s) | 711 |
| BspT107I | GGYRCC | 4 cut(s) | 487, 1148, 1241, 1364 |
| BspTNI | GGTCTC | 3 cut(s) | 26, 746, 1367 |
| BsrBI | CCGCTC | 4 cut(s) | 238, 550, 790, 919 |
| BsrFI | RCCGGY | 2 cut(s) | 280, 1046 |
| BsrI | ACTGG | 6 cut(s) | 57, 100, 136, 317, 780, 1380 |
| BssAI | RCCGGY | 2 cut(s) | 280, 1046 |
| BssMI | GATC | 4 cut(s) | 199, 900, 1402, 1415 |
| BssNI | GRCGYC | 4 cut(s) | 488, 692, 825, 1149 |
| BssT1I | CCWWGG | 2 cut(s) | 145, 801 |
| Bst2UI | CCWGG | 1 cut(s) | 1111 |
| Bst4CI | ACNGT | 4 cut(s) | 70, 169, 190, 298 |
| Bst6I | CTCTTC | 3 cut(s) | 393, 566, 711 |
| BstACI | GRCGYC | 4 cut(s) | 488, 692, 825, 1149 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1190 |
| BstDEI | CTNAG | 3 cut(s) | 183, 381, 1016 |
| BstDSI | CCRYGG | 1 cut(s) | 69 |
| BstEII | GGTNACC | 1 cut(s) | 1006 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 149, 911 |
| BstF5I | GGATG | 6 cut(s) | 160, 246, 981, 1273, 1324, 1366 |
| BstFNI | CGCG | 3 cut(s) | 527, 1329, 1424 |
| BstH2I | RGCGCY | 5 cut(s) | 216, 359, 373, 491, 1152 |
| BstHHI | GCGC | 8 cut(s) | 215, 358, 372, 490, 529, 1151, 1331, 1426 |
| BstKTI | GATC | 4 cut(s) | 202, 903, 1405, 1418 |
| BstMBI | GATC | 4 cut(s) | 199, 900, 1402, 1415 |
| BstMCI | CGRYCG | 4 cut(s) | 192, 1044, 1418, 1422 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 130, 169, 452, 524, 1043, 1106, 1190, 1263 |
| BstNI | CCWGG | 1 cut(s) | 1111 |
| BstNSI | RCATGY | 1 cut(s) | 1135 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 332, 1217 |
| BstPI | GGTNACC | 1 cut(s) | 1006 |
| BstSCI | CCNGG | 8 cut(s) | 6, 78, 194, 704, 1109, 1206, 1352, 1353 |
| BstSFI | CTRYAG | 1 cut(s) | 911 |
| BstSLI | GKGCMC | 3 cut(s) | 430, 1117, 1206 |
| BstUI | CGCG | 3 cut(s) | 527, 1329, 1424 |
| BstV1I | GCAGC | 6 cut(s) | 202, 712, 843, 967, 1024, 1266 |
| BstV2I | GAAGAC | 2 cut(s) | 470, 1091 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 257 |
| BstZI | CGGCCG | 1 cut(s) | 1041 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1016 |
| BtgI | CCRYGG | 1 cut(s) | 69 |
| BtrI | CACGTC | 1 cut(s) | 880 |
| BtsCI | GGATG | 6 cut(s) | 160, 246, 981, 1273, 1324, 1366 |
| BtsIMutI | CAGTG | 2 cut(s) | 294, 324 |
| CaiI | CAGNNNCTG | 1 cut(s) | 580 |
| CciNI | GCGGCCGC | 1 cut(s) | 1041 |
| CfoI | GCGC | 8 cut(s) | 215, 358, 372, 490, 529, 1151, 1331, 1426 |
| Cfr10I | RCCGGY | 2 cut(s) | 280, 1046 |
| Cfr9I | CCCGGG | 1 cut(s) | 1353 |
| CseI | GACGC | 4 cut(s) | 681, 833, 1096, 1190 |
| Csp6I | GTAC | 4 cut(s) | 523, 1032, 1242, 1365 |
| CviAII | CATG | 3 cut(s) | 37, 674, 1132 |
| CviQI | GTAC | 4 cut(s) | 523, 1032, 1242, 1365 |
| DdeI | CTNAG | 3 cut(s) | 183, 381, 1016 |
| DinI | GGCGCC | 2 cut(s) | 489, 1150 |
| DpnI | GATC | 4 cut(s) | 201, 902, 1404, 1417 |
| DpnII | GATC | 4 cut(s) | 199, 900, 1402, 1415 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 382, 1285 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1380 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 382, 1285 |
| EaeI | YGGCCR | 2 cut(s) | 978, 1041 |
| EagI | CGGCCG | 1 cut(s) | 1041 |
| Eam1104I | CTCTTC | 3 cut(s) | 393, 566, 711 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1380 |
| EarI | CTCTTC | 3 cut(s) | 393, 566, 711 |
| EciI | GGCGGA | 6 cut(s) | 26, 299, 794, 821, 955, 1373 |
| Ecl136II | GAGCTC | 1 cut(s) | 721 |
| EclXI | CGGCCG | 1 cut(s) | 1041 |
| Eco130I | CCWWGG | 2 cut(s) | 145, 801 |
| Eco24I | GRGCYC | 3 cut(s) | 430, 723, 1117 |
| Eco31I | GGTCTC | 3 cut(s) | 26, 746, 1367 |
| Eco47I | GGWCC | 3 cut(s) | 4, 260, 1398 |
| Eco47III | AGCGCT | 1 cut(s) | 214 |
| Eco52I | CGGCCG | 1 cut(s) | 1041 |
| Eco53kI | GAGCTC | 1 cut(s) | 721 |
| Eco57I | CTGAAG | 2 cut(s) | 622, 1044 |
| Eco81I | CCTNAGG | 1 cut(s) | 1016 |
| Eco88I | CYCGRG | 5 cut(s) | 643, 722, 1116, 1353, 1392 |
| Eco91I | GGTNACC | 1 cut(s) | 1006 |
| EcoICRI | GAGCTC | 1 cut(s) | 721 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 149, 911 |
| EcoO109I | RGGNCCY | 2 cut(s) | 426, 1113 |
| EcoO65I | GGTNACC | 1 cut(s) | 1006 |
| EcoRII | CCWGG | 1 cut(s) | 1109 |
| EcoT14I | CCWWGG | 2 cut(s) | 145, 801 |
| EcoT38I | GRGCYC | 3 cut(s) | 430, 723, 1117 |
| EgeI | GGCGCC | 2 cut(s) | 489, 1150 |
| EheI | GGCGCC | 2 cut(s) | 489, 1150 |
| ErhI | CCWWGG | 2 cut(s) | 145, 801 |
| Esp3I | CGTCTC | 3 cut(s) | 77, 399, 886 |
| FaeI | CATG | 3 cut(s) | 40, 677, 1135 |
| FaqI | GGGAC | 3 cut(s) | 63, 193, 872 |
| FatI | CATG | 3 cut(s) | 36, 673, 1131 |
| FblI | GTMKAC | 1 cut(s) | 507 |
| FokI | GGATG | 6 cut(s) | 167, 253, 988, 1260, 1331, 1373 |
| FriOI | GRGCYC | 3 cut(s) | 430, 723, 1117 |
| GlaI | GCGC | 8 cut(s) | 214, 357, 371, 489, 528, 1150, 1330, 1425 |
| GsaI | CCCAGC | 4 cut(s) | 64, 345, 584, 1235 |
| GsuI | CTGGAG | 4 cut(s) | 380, 728, 1257, 1361 |
| HaeII | RGCGCY | 5 cut(s) | 216, 359, 373, 491, 1152 |
| HgaI | GACGC | 4 cut(s) | 681, 833, 1096, 1190 |
| HhaI | GCGC | 8 cut(s) | 215, 358, 372, 490, 529, 1151, 1331, 1426 |
| Hin1I | GRCGYC | 4 cut(s) | 488, 692, 825, 1149 |
| Hin1II | CATG | 3 cut(s) | 40, 677, 1135 |
| Hin6I | GCGC | 8 cut(s) | 213, 356, 370, 488, 527, 1149, 1329, 1424 |
| HinP1I | GCGC | 8 cut(s) | 213, 356, 370, 488, 527, 1149, 1329, 1424 |
| HinfI | GANTC | 7 cut(s) | 181, 346, 383, 509, 962, 1218, 1297 |
| HphI | GGTGA | 9 cut(s) | 85, 130, 134, 161, 337, 487, 512, 1013, 1295 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 508 |
| Hpy188III | TCNNGA | 4 cut(s) | 389, 745, 1081, 1340 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 508 |
| Hpy99I | CGWCG | 6 cut(s) | 341, 500, 619, 697, 1282, 1318 |
| HpyCH4III | ACNGT | 4 cut(s) | 70, 169, 190, 298 |
| HpyCH4IV | ACGT | 2 cut(s) | 86, 879 |
| HpyCH4V | TGCA | 5 cut(s) | 172, 277, 764, 913, 1273 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 130, 169, 452, 524, 1043, 1106, 1190, 1263 |
| HpyF3I | CTNAG | 3 cut(s) | 183, 381, 1016 |
| HpySE526I | ACGT | 2 cut(s) | 86, 879 |
| Hsp92I | GRCGYC | 4 cut(s) | 488, 692, 825, 1149 |
| Hsp92II | CATG | 3 cut(s) | 40, 677, 1135 |
| HspAI | GCGC | 8 cut(s) | 213, 356, 370, 488, 527, 1149, 1329, 1424 |
| KasI | GGCGCC | 2 cut(s) | 487, 1148 |
| KpnI | GGTACC | 2 cut(s) | 1245, 1368 |
| Kzo9I | GATC | 4 cut(s) | 199, 900, 1402, 1415 |
| LguI | GCTCTTC | 1 cut(s) | 711 |
| LmnI | GCTCC | 7 cut(s) | 235, 310, 460, 547, 865, 892, 916 |
| Lsp1109I | GCAGC | 6 cut(s) | 202, 712, 843, 967, 1024, 1266 |
| LweI | GCATC | 4 cut(s) | 111, 117, 231, 1282 |
| MaeII | ACGT | 2 cut(s) | 86, 879 |
| MaeIII | GTNAC | 6 cut(s) | 292, 298, 325, 1006, 1287, 1323 |
| MalI | GATC | 4 cut(s) | 201, 902, 1404, 1417 |
| MbiI | CCGCTC | 4 cut(s) | 238, 550, 790, 919 |
| MboI | GATC | 4 cut(s) | 199, 900, 1402, 1415 |
| MboII | GAAGA | 9 cut(s) | 299, 410, 451, 475, 553, 728, 740, 1096, 1457 |
| MfeI | CAATTG | 1 cut(s) | 621 |
| MhlI | GDGCHC | 4 cut(s) | 430, 723, 1117, 1206 |
| MluCI | AATT | 2 cut(s) | 22, 621 |
| Mly113I | GGCGCC | 2 cut(s) | 488, 1149 |
| MlyI | GAGTC | 7 cut(s) | 175, 355, 392, 503, 971, 1227, 1291 |
| MmeI | TCCRAC | 4 cut(s) | 870, 1296, 1301, 1409 |
| MslI | CAYNNNNRTG | 2 cut(s) | 147, 255 |
| MspA1I | CMGCKG | 5 cut(s) | 577, 958, 1235, 1257, 1464 |
| MspR9I | CCNGG | 8 cut(s) | 8, 80, 196, 706, 1111, 1208, 1354, 1355 |
| MunI | CAATTG | 1 cut(s) | 621 |
| MvaI | CCWGG | 1 cut(s) | 1111 |
| MvnI | CGCG | 3 cut(s) | 527, 1329, 1424 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 130, 169, 452, 524, 1043, 1106, 1190, 1263 |
| NarI | GGCGCC | 2 cut(s) | 488, 1149 |
| NciI | CCSGG | 7 cut(s) | 8, 80, 196, 706, 1208, 1354, 1355 |
| NdeII | GATC | 4 cut(s) | 199, 900, 1402, 1415 |
| NlaIII | CATG | 3 cut(s) | 40, 677, 1135 |
| NmeAIII | GCCGAG | 2 cut(s) | 70, 544 |
| NmuCI | GTSAC | 5 cut(s) | 292, 298, 325, 1287, 1323 |
| NotI | GCGGCCGC | 1 cut(s) | 1041 |
| NspI | RCATGY | 1 cut(s) | 1135 |
| OliI | CACNNNNGTG | 2 cut(s) | 147, 255 |
| PaeR7I | CTCGAG | 1 cut(s) | 1392 |
| PciI | ACATGT | 1 cut(s) | 1131 |
| PciSI | GCTCTTC | 1 cut(s) | 711 |
| PflFI | GACNNNGTC | 1 cut(s) | 1160 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 580 |
| Ple19I | CGATCG | 1 cut(s) | 1418 |
| PleI | GAGTC | 7 cut(s) | 175, 354, 391, 503, 970, 1226, 1291 |
| PluTI | GGCGCC | 2 cut(s) | 491, 1152 |
| PpsI | GAGTC | 7 cut(s) | 175, 354, 391, 503, 970, 1226, 1291 |
| PscI | ACATGT | 1 cut(s) | 1131 |
| PshAI | GACNNNNGTC | 2 cut(s) | 332, 1217 |
| Psp124BI | GAGCTC | 1 cut(s) | 723 |
| Psp6I | CCWGG | 1 cut(s) | 1109 |
| PspEI | GGTNACC | 1 cut(s) | 1006 |
| PspFI | CCCAGC | 4 cut(s) | 60, 341, 580, 1231 |
| PspGI | CCWGG | 1 cut(s) | 1109 |
| PspOMI | GGGCCC | 2 cut(s) | 426, 1113 |
| PspXI | VCTCGAGB | 1 cut(s) | 1392 |
| PstI | CTGCAG | 1 cut(s) | 915 |
| PstNI | CAGNNNCTG | 1 cut(s) | 580 |
| PsyI | GACNNNGTC | 1 cut(s) | 1160 |
| PvuI | CGATCG | 1 cut(s) | 1418 |
| PvuII | CAGCTG | 1 cut(s) | 1235 |
| RsaI | GTAC | 4 cut(s) | 524, 1033, 1243, 1366 |
| RsaNI | GTAC | 4 cut(s) | 523, 1032, 1242, 1365 |
| RseI | CAYNNNNRTG | 2 cut(s) | 147, 255 |
| SacI | GAGCTC | 1 cut(s) | 723 |
| SapI | GCTCTTC | 1 cut(s) | 711 |
| Sau3AI | GATC | 4 cut(s) | 199, 900, 1402, 1415 |
| ScaI | AGTACT | 1 cut(s) | 1033 |
| SchI | GAGTC | 7 cut(s) | 175, 355, 392, 503, 971, 1227, 1291 |
| ScrFI | CCNGG | 8 cut(s) | 8, 80, 196, 706, 1111, 1208, 1354, 1355 |
| SduI | GDGCHC | 4 cut(s) | 430, 723, 1117, 1206 |
| SfaNI | GCATC | 4 cut(s) | 111, 117, 231, 1282 |
| SfcI | CTRYAG | 1 cut(s) | 911 |
| SfoI | GGCGCC | 2 cut(s) | 489, 1150 |
| Sfr274I | CTCGAG | 1 cut(s) | 1392 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1046 |
| SinI | GGWCC | 3 cut(s) | 4, 260, 1398 |
| SlaI | CTCGAG | 1 cut(s) | 1392 |
| SmaI | CCCGGG | 1 cut(s) | 1355 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 147, 255 |
| SmlI | CTYRAG | 1 cut(s) | 1392 |
| SmoI | CTYRAG | 1 cut(s) | 1392 |
| Sse9I | AATT | 2 cut(s) | 22, 621 |
| SspDI | GGCGCC | 2 cut(s) | 487, 1148 |
| SstI | GAGCTC | 1 cut(s) | 723 |
| StyD4I | CCNGG | 8 cut(s) | 6, 78, 194, 704, 1109, 1206, 1352, 1353 |
| StyI | CCWWGG | 2 cut(s) | 145, 801 |
| TaaI | ACNGT | 4 cut(s) | 70, 169, 190, 298 |
| TaiI | ACGT | 2 cut(s) | 89, 882 |
| TaqI | TCGA | 5 cut(s) | 461, 695, 786, 1393, 1452 |
| TaqII | GACCGA | 2 cut(s) | 1109, 1408 |
| TasI | AATT | 2 cut(s) | 22, 621 |
| TatI | WGTACW | 1 cut(s) | 1031 |
| TscAI | CASTG | 2 cut(s) | 301, 324 |
| TseFI | GTSAC | 5 cut(s) | 292, 298, 325, 1287, 1323 |
| TseI | GCWGC | 6 cut(s) | 215, 700, 831, 955, 1037, 1254 |
| Tsp45I | GTSAC | 5 cut(s) | 292, 298, 325, 1287, 1323 |
| TspDTI | ATGAA | 1 cut(s) | 888 |
| TspGWI | ACGGA | 1 cut(s) | 1295 |
| TspMI | CCCGGG | 1 cut(s) | 1353 |
| TspRI | CASTG | 2 cut(s) | 301, 324 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1160 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 580 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 260, 1398 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 149, 911 |
| XceI | RCATGY | 1 cut(s) | 1135 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 143 |
| XhoI | CTCGAG | 1 cut(s) | 1392 |
| XmaI | CCCGGG | 1 cut(s) | 1353 |
| XmiI | GTMKAC | 1 cut(s) | 507 |
| ZrmI | AGTACT | 1 cut(s) | 1033 |