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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 107 |
| AccBSI | CCGCTC | 1 cut(s) | 139 |
| AccI | GTMKAC | 1 cut(s) | 299 |
| AccII | CGCG | 3 cut(s) | 16, 74, 333 |
| AclWI | GGATC | 1 cut(s) | 138 |
| AcsI | RAATTY | 2 cut(s) | 119, 149 |
| AcyI | GRCGYC | 4 cut(s) | 108, 194, 296, 318 |
| AfaI | GTAC | 1 cut(s) | 47 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 25, 75, 78, 208 |
| AgsI | TTSAA | 1 cut(s) | 259 |
| AluBI | AGCT | 2 cut(s) | 277, 340 |
| AluI | AGCT | 2 cut(s) | 277, 340 |
| Alw26I | GTCTC | 2 cut(s) | 247, 278 |
| AlwI | GGATC | 1 cut(s) | 138 |
| Ama87I | CYCGRG | 1 cut(s) | 207 |
| AoxI | GGCC | 2 cut(s) | 38, 264 |
| ApoI | RAATTY | 2 cut(s) | 119, 149 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 134, 166 |
| AscI | GGCGCGCC | 1 cut(s) | 14 |
| AspLEI | GCGC | 3 cut(s) | 16, 18, 110 |
| AspS9I | GGNCC | 2 cut(s) | 265, 362 |
| AsuC2I | CCSGG | 1 cut(s) | 188 |
| AvaI | CYCGRG | 1 cut(s) | 207 |
| AvaII | GGWCC | 1 cut(s) | 362 |
| BanI | GGYRCC | 1 cut(s) | 107 |
| BauI | CACGAG | 1 cut(s) | 176 |
| BccI | CCATC | 1 cut(s) | 228 |
| BcnI | CCSGG | 1 cut(s) | 188 |
| BcoDI | GTCTC | 2 cut(s) | 247, 278 |
| BfaI | CTAG | 2 cut(s) | 95, 134 |
| BfoI | RGCGCY | 1 cut(s) | 111 |
| BisI | GCNGC | 7 cut(s) | 69, 72, 192, 218, 221, 294, 334 |
| BlsI | GCNGC | 7 cut(s) | 70, 73, 193, 219, 222, 295, 335 |
| Bme1390I | CCNGG | 1 cut(s) | 188 |
| Bme18I | GGWCC | 1 cut(s) | 362 |
| BmeT110I | CYCGRG | 1 cut(s) | 207 |
| BmgT120I | GGNCC | 2 cut(s) | 265, 362 |
| BmiI | GGNNCC | 1 cut(s) | 109 |
| BmrFI | CCNGG | 1 cut(s) | 188 |
| BmsI | GCATC | 1 cut(s) | 316 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 128, 160 |
| BpmI | CTGGAG | 1 cut(s) | 299 |
| BpuMI | CCSGG | 1 cut(s) | 188 |
| BsaHI | GRCGYC | 4 cut(s) | 108, 194, 296, 318 |
| BsaI | GGTCTC | 2 cut(s) | 247, 278 |
| BsaJI | CCNNGG | 6 cut(s) | 72, 206, 288, 303, 321, 331 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 25, 75, 78, 208 |
| Bse118I | RCCGGY | 1 cut(s) | 40 |
| BseDI | CCNNGG | 6 cut(s) | 72, 206, 288, 303, 321, 331 |
| BseGI | GGATG | 1 cut(s) | 331 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 25, 75, 78, 208 |
| BsePI | GCGCGC | 1 cut(s) | 14 |
| BseRI | GAGGAG | 2 cut(s) | 41, 296 |
| BsgI | GTGCAG | 1 cut(s) | 158 |
| Bsh1236I | CGCG | 3 cut(s) | 16, 74, 333 |
| Bsh1285I | CGRYCG | 1 cut(s) | 9 |
| BshFI | GGCC | 2 cut(s) | 40, 266 |
| BshNI | GGYRCC | 1 cut(s) | 107 |
| BsiEI | CGRYCG | 1 cut(s) | 9 |
| BsiHKCI | CYCGRG | 1 cut(s) | 207 |
| BsiSI | CCGG | 2 cut(s) | 41, 188 |
| BslFI | GGGAC | 1 cut(s) | 155 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 25, 75, 78, 208 |
| BsmAI | GTCTC | 2 cut(s) | 247, 278 |
| BsmFI | GGGAC | 1 cut(s) | 155 |
| BsnI | GGCC | 2 cut(s) | 40, 266 |
| Bso31I | GGTCTC | 2 cut(s) | 247, 278 |
| BsoBI | CYCGRG | 1 cut(s) | 207 |
| Bsp143I | GATC | 2 cut(s) | 6, 130 |
| BspANI | GGCC | 2 cut(s) | 40, 266 |
| BspFNI | CGCG | 3 cut(s) | 16, 74, 333 |
| BspLI | GGNNCC | 1 cut(s) | 109 |
| BspPI | GGATC | 1 cut(s) | 138 |
| BspT107I | GGYRCC | 1 cut(s) | 107 |
| BspTNI | GGTCTC | 2 cut(s) | 247, 278 |
| BsrBI | CCGCTC | 1 cut(s) | 139 |
| BsrFI | RCCGGY | 1 cut(s) | 40 |
| BssAI | RCCGGY | 1 cut(s) | 40 |
| BssECI | CCNNGG | 6 cut(s) | 72, 206, 288, 303, 321, 331 |
| BssHII | GCGCGC | 1 cut(s) | 14 |
| BssMI | GATC | 2 cut(s) | 6, 130 |
| BssNI | GRCGYC | 4 cut(s) | 108, 194, 296, 318 |
| BssSI | CACGAG | 1 cut(s) | 176 |
| BssT1I | CCWWGG | 2 cut(s) | 303, 321 |
| Bst2BI | CACGAG | 1 cut(s) | 176 |
| BstACI | GRCGYC | 4 cut(s) | 108, 194, 296, 318 |
| BstC8I | GCNNGC | 5 cut(s) | 16, 20, 42, 331, 338 |
| BstDEI | CTNAG | 1 cut(s) | 341 |
| BstDSI | CCRYGG | 2 cut(s) | 72, 331 |
| BstF5I | GGATG | 1 cut(s) | 331 |
| BstFNI | CGCG | 3 cut(s) | 16, 74, 333 |
| BstH2I | RGCGCY | 1 cut(s) | 111 |
| BstHHI | GCGC | 3 cut(s) | 16, 18, 110 |
| BstKTI | GATC | 2 cut(s) | 9, 133 |
| BstMAI | GTCTC | 2 cut(s) | 247, 278 |
| BstMBI | GATC | 2 cut(s) | 6, 130 |
| BstMCI | CGRYCG | 1 cut(s) | 9 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 80, 326 |
| BstSCI | CCNGG | 1 cut(s) | 186 |
| BstUI | CGCG | 3 cut(s) | 16, 74, 333 |
| BstX2I | RGATCY | 1 cut(s) | 130 |
| BstYI | RGATCY | 1 cut(s) | 130 |
| BsuRI | GGCC | 2 cut(s) | 40, 266 |
| BtgI | CCRYGG | 2 cut(s) | 72, 331 |
| BtsCI | GGATG | 1 cut(s) | 331 |
| Cac8I | GCNNGC | 5 cut(s) | 16, 20, 42, 331, 338 |
| CfoI | GCGC | 3 cut(s) | 16, 18, 110 |
| Cfr10I | RCCGGY | 1 cut(s) | 40 |
| Cfr13I | GGNCC | 2 cut(s) | 265, 362 |
| Cfr42I | CCGCGG | 2 cut(s) | 75, 334 |
| CseI | GACGC | 3 cut(s) | 183, 285, 326 |
| Csp6I | GTAC | 1 cut(s) | 46 |
| CviJI | RGCY | 5 cut(s) | 40, 94, 266, 277, 340 |
| CviKI_1 | RGCY | 5 cut(s) | 40, 94, 266, 277, 340 |
| CviQI | GTAC | 1 cut(s) | 46 |
| DdeI | CTNAG | 1 cut(s) | 341 |
| DinI | GGCGCC | 1 cut(s) | 109 |
| DpnI | GATC | 2 cut(s) | 8, 132 |
| DpnII | GATC | 2 cut(s) | 6, 130 |
| EciI | GGCGGA | 1 cut(s) | 323 |
| Eco130I | CCWWGG | 2 cut(s) | 303, 321 |
| Eco31I | GGTCTC | 2 cut(s) | 247, 278 |
| Eco47I | GGWCC | 1 cut(s) | 362 |
| Eco88I | CYCGRG | 1 cut(s) | 207 |
| EcoO109I | RGGNCCY | 1 cut(s) | 362 |
| EcoT14I | CCWWGG | 2 cut(s) | 303, 321 |
| EgeI | GGCGCC | 1 cut(s) | 109 |
| EheI | GGCGCC | 1 cut(s) | 109 |
| ErhI | CCWWGG | 2 cut(s) | 303, 321 |
| FaqI | GGGAC | 1 cut(s) | 155 |
| FauI | CCCGC | 3 cut(s) | 67, 132, 338 |
| FblI | GTMKAC | 1 cut(s) | 299 |
| Fnu4HI | GCNGC | 7 cut(s) | 69, 72, 192, 218, 221, 294, 334 |
| FokI | GGATG | 1 cut(s) | 338 |
| Fsp4HI | GCNGC | 7 cut(s) | 69, 72, 192, 218, 221, 294, 334 |
| FspBI | CTAG | 2 cut(s) | 95, 134 |
| GlaI | GCGC | 3 cut(s) | 15, 17, 109 |
| GluI | GCNGC | 7 cut(s) | 69, 72, 192, 218, 221, 294, 334 |
| GsuI | CTGGAG | 1 cut(s) | 299 |
| HaeII | RGCGCY | 1 cut(s) | 111 |
| HaeIII | GGCC | 2 cut(s) | 40, 266 |
| HapII | CCGG | 2 cut(s) | 41, 188 |
| HgaI | GACGC | 3 cut(s) | 183, 285, 326 |
| HhaI | GCGC | 3 cut(s) | 16, 18, 110 |
| Hin1I | GRCGYC | 4 cut(s) | 108, 194, 296, 318 |
| Hin6I | GCGC | 3 cut(s) | 14, 16, 108 |
| HinP1I | GCGC | 3 cut(s) | 14, 16, 108 |
| HincII | GTYRAC | 1 cut(s) | 300 |
| HindII | GTYRAC | 1 cut(s) | 300 |
| HinfI | GANTC | 2 cut(s) | 98, 143 |
| HpaII | CCGG | 2 cut(s) | 41, 188 |
| Hpy166II | GTNNAC | 1 cut(s) | 300 |
| Hpy188I | TCNGA | 2 cut(s) | 148, 247 |
| Hpy188III | TCNNGA | 2 cut(s) | 124, 134 |
| Hpy8I | GTNNAC | 1 cut(s) | 300 |
| Hpy99I | CGWCG | 2 cut(s) | 199, 301 |
| HpyAV | CCTTC | 4 cut(s) | 30, 222, 232, 253 |
| HpyCH4V | TGCA | 1 cut(s) | 175 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 80, 326 |
| HpyF3I | CTNAG | 1 cut(s) | 341 |
| Hsp92I | GRCGYC | 4 cut(s) | 108, 194, 296, 318 |
| HspAI | GCGC | 3 cut(s) | 14, 16, 108 |
| KasI | GGCGCC | 1 cut(s) | 107 |
| KroI | GCCGGC | 1 cut(s) | 40 |
| KroNI | GCCGGC | 1 cut(s) | 42 |
| KspI | CCGCGG | 2 cut(s) | 75, 334 |
| Kzo9I | GATC | 2 cut(s) | 6, 130 |
| LpnPI | CCDG | 4 cut(s) | 32, 54, 201, 263 |
| LweI | GCATC | 1 cut(s) | 316 |
| MaeI | CTAG | 2 cut(s) | 95, 134 |
| MaeIII | GTNAC | 1 cut(s) | 314 |
| MalI | GATC | 2 cut(s) | 8, 132 |
| MbiI | CCGCTC | 1 cut(s) | 139 |
| MboI | GATC | 2 cut(s) | 6, 130 |
| MboII | GAAGA | 1 cut(s) | 237 |
| MflI | RGATCY | 1 cut(s) | 130 |
| MluCI | AATT | 2 cut(s) | 119, 149 |
| Mly113I | GGCGCC | 1 cut(s) | 108 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MnlI | CCTC | 7 cut(s) | 19, 216, 243, 256, 274, 283, 353 |
| MroNI | GCCGGC | 1 cut(s) | 40 |
| MseI | TTAA | 1 cut(s) | 213 |
| MspA1I | CMGCKG | 2 cut(s) | 74, 333 |
| MspI | CCGG | 2 cut(s) | 41, 188 |
| MspR9I | CCNGG | 1 cut(s) | 188 |
| MvnI | CGCG | 3 cut(s) | 16, 74, 333 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 80, 326 |
| NaeI | GCCGGC | 1 cut(s) | 42 |
| NarI | GGCGCC | 1 cut(s) | 108 |
| NciI | CCSGG | 1 cut(s) | 188 |
| NdeII | GATC | 2 cut(s) | 6, 130 |
| NgoMIV | GCCGGC | 1 cut(s) | 40 |
| NlaIV | GGNNCC | 1 cut(s) | 109 |
| NmuCI | GTSAC | 1 cut(s) | 314 |
| PalAI | GGCGCGCC | 1 cut(s) | 14 |
| PauI | GCGCGC | 1 cut(s) | 14 |
| PdiI | GCCGGC | 1 cut(s) | 42 |
| PfeI | GAWTC | 1 cut(s) | 98 |
| PkrI | GCNGC | 7 cut(s) | 70, 73, 193, 219, 222, 295, 335 |
| Ple19I | CGATCG | 1 cut(s) | 9 |
| PleI | GAGTC | 1 cut(s) | 137 |
| PluTI | GGCGCC | 1 cut(s) | 111 |
| PpsI | GAGTC | 1 cut(s) | 137 |
| PpuMI | RGGWCCY | 1 cut(s) | 362 |
| Psp5II | RGGWCCY | 1 cut(s) | 362 |
| PspN4I | GGNNCC | 1 cut(s) | 109 |
| PspPI | GGNCC | 2 cut(s) | 265, 362 |
| PspPPI | RGGWCCY | 1 cut(s) | 362 |
| PsuI | RGATCY | 1 cut(s) | 130 |
| PteI | GCGCGC | 1 cut(s) | 14 |
| PvuI | CGATCG | 1 cut(s) | 9 |
| RsaI | GTAC | 1 cut(s) | 47 |
| RsaNI | GTAC | 1 cut(s) | 46 |
| SacII | CCGCGG | 2 cut(s) | 75, 334 |
| SalI | GTCGAC | 1 cut(s) | 298 |
| SaqAI | TTAA | 1 cut(s) | 213 |
| SatI | GCNGC | 7 cut(s) | 69, 72, 192, 218, 221, 294, 334 |
| Sau3AI | GATC | 2 cut(s) | 6, 130 |
| Sau96I | GGNCC | 2 cut(s) | 265, 362 |
| SchI | GAGTC | 1 cut(s) | 137 |
| ScrFI | CCNGG | 1 cut(s) | 188 |
| SetI | ASST | 4 cut(s) | 243, 279, 342, 367 |
| SfaNI | GCATC | 1 cut(s) | 316 |
| SfoI | GGCGCC | 1 cut(s) | 109 |
| Sfr303I | CCGCGG | 2 cut(s) | 75, 334 |
| SgrBI | CCGCGG | 2 cut(s) | 75, 334 |
| SgsI | GGCGCGCC | 1 cut(s) | 14 |
| SinI | GGWCC | 1 cut(s) | 362 |
| Sse9I | AATT | 2 cut(s) | 119, 149 |
| SspDI | GGCGCC | 1 cut(s) | 107 |
| SspMI | CTAG | 2 cut(s) | 95, 134 |
| StyD4I | CCNGG | 1 cut(s) | 186 |
| StyI | CCWWGG | 2 cut(s) | 303, 321 |
| TaqI | TCGA | 2 cut(s) | 197, 299 |
| TaqII | GACCGA | 1 cut(s) | 302 |
| TasI | AATT | 2 cut(s) | 119, 149 |
| TauI | GCSGC | 7 cut(s) | 71, 74, 194, 220, 223, 296, 336 |
| TfiI | GAWTC | 1 cut(s) | 98 |
| Tru1I | TTAA | 1 cut(s) | 213 |
| Tru9I | TTAA | 1 cut(s) | 213 |
| TseFI | GTSAC | 1 cut(s) | 314 |
| Tsp45I | GTSAC | 1 cut(s) | 314 |
| TspDTI | ATGAA | 1 cut(s) | 154 |
| TspGWI | ACGGA | 1 cut(s) | 143 |
| VpaK11BI | GGWCC | 1 cut(s) | 362 |
| XapI | RAATTY | 2 cut(s) | 119, 149 |
| XbaI | TCTAGA | 1 cut(s) | 133 |
| XmiI | GTMKAC | 1 cut(s) | 299 |
| XspI | CTAG | 2 cut(s) | 95, 134 |