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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2091 |
| Acc16I | TGCGCA | 1 cut(s) | 2153 |
| Acc36I | ACCTGC | 1 cut(s) | 1448 |
| AccB1I | GGYRCC | 4 cut(s) | 701, 1345, 1957, 2047 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 907, 954 |
| AccBSI | CCGCTC | 5 cut(s) | 1408, 1603, 1732, 1862, 2054 |
| AccII | CGCG | 5 cut(s) | 603, 1468, 1644, 1853, 2133 |
| AcoI | YGGCCR | 5 cut(s) | 487, 1611, 1659, 1854, 1997 |
| AcsI | RAATTY | 1 cut(s) | 917 |
| AcuI | CTGAAG | 4 cut(s) | 1480, 1815, 1857, 1970 |
| AcyI | GRCGYC | 5 cut(s) | 540, 818, 1346, 1638, 1958 |
| AfaI | GTAC | 3 cut(s) | 1049, 1846, 2007 |
| AflIII | ACRYGT | 2 cut(s) | 951, 1690 |
| AgsI | TTSAA | 2 cut(s) | 1868, 1876 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1135 |
| AjiI | CACGTC | 2 cut(s) | 1270, 1693 |
| AjnI | CCWGG | 6 cut(s) | 484, 693, 906, 1190, 1806, 2144 |
| AluBI | AGCT | 9 cut(s) | 31, 138, 564, 790, 1042, 1111, 1363, 1500, 1651 |
| AluI | AGCT | 9 cut(s) | 31, 138, 564, 790, 1042, 1111, 1363, 1500, 1651 |
| Alw21I | GWGCWC | 1 cut(s) | 566 |
| Alw26I | GTCTC | 8 cut(s) | 168, 229, 309, 370, 431, 1466, 1559, 1699 |
| Ama87I | CYCGRG | 2 cut(s) | 86, 2159 |
| ApaI | GGGCCC | 2 cut(s) | 1288, 1930 |
| ApoI | RAATTY | 1 cut(s) | 917 |
| AseI | ATTAAT | 1 cut(s) | 549 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1026 |
| AspLEI | GCGC | 9 cut(s) | 603, 795, 1105, 1348, 1470, 1806, 1960, 2077, 2154 |
| AspS9I | GGNCC | 9 cut(s) | 1007, 1152, 1208, 1284, 1285, 1926, 1927, 2093, 2162 |
| AsuC2I | CCSGG | 5 cut(s) | 555, 777, 997, 2160, 2161 |
| AsuHPI | GGTGA | 7 cut(s) | 266, 407, 587, 1156, 1288, 1415, 1826 |
| AsuNHI | GCTAGC | 1 cut(s) | 152 |
| AvaI | CYCGRG | 2 cut(s) | 86, 2159 |
| AvaII | GGWCC | 2 cut(s) | 1152, 2093 |
| AxyI | CCTNAGG | 1 cut(s) | 1829 |
| BaeGI | GKGCMC | 3 cut(s) | 1288, 1930, 2052 |
| BalI | TGGCCA | 2 cut(s) | 1613, 1661 |
| BanI | GGYRCC | 4 cut(s) | 701, 1345, 1957, 2047 |
| BanII | GRGCYC | 4 cut(s) | 566, 782, 1288, 1930 |
| BbsI | GAAGAC | 1 cut(s) | 485 |
| Bbv12I | GWGCWC | 1 cut(s) | 566 |
| BccI | CCATC | 7 cut(s) | 692, 1394, 1431, 1670, 1969, 1984, 2161 |
| BceAI | ACGGC | 7 cut(s) | 474, 692, 819, 1077, 1337, 1451, 1491 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1446, 1480 |
| BciT130I | CCWGG | 6 cut(s) | 486, 695, 908, 1192, 1808, 2146 |
| BcnI | CCSGG | 5 cut(s) | 555, 777, 997, 2160, 2161 |
| BcoDI | GTCTC | 8 cut(s) | 168, 229, 309, 370, 431, 1466, 1559, 1699 |
| BfaI | CTAG | 8 cut(s) | 153, 567, 830, 887, 1439, 1454, 1931, 2138 |
| BfmI | CTRYAG | 1 cut(s) | 1724 |
| BfoI | RGCGCY | 4 cut(s) | 1106, 1349, 1807, 1961 |
| BfuAI | ACCTGC | 1 cut(s) | 1448 |
| BlpI | GCTNAGC | 3 cut(s) | 167, 228, 430 |
| BmcAI | AGTACT | 1 cut(s) | 1846 |
| Bme18I | GGWCC | 2 cut(s) | 1152, 2093 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1135 |
| BmeT110I | CYCGRG | 2 cut(s) | 86, 2159 |
| BmgBI | CACGTC | 2 cut(s) | 1270, 1693 |
| BmgT120I | GGNCC | 9 cut(s) | 1007, 1152, 1208, 1284, 1285, 1926, 1927, 2093, 2162 |
| BmtI | GCTAGC | 1 cut(s) | 156 |
| BpiI | GAAGAC | 1 cut(s) | 485 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1352, 1384 |
| BpmI | CTGGAG | 3 cut(s) | 677, 1541, 1829 |
| Bpu10I | CCTNAGC | 4 cut(s) | 480, 1085, 1107, 2055 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 167, 228, 430 |
| BpuMI | CCSGG | 5 cut(s) | 555, 777, 997, 2160, 2161 |
| BsaAI | YACGTR | 1 cut(s) | 1051 |
| BsaBI | GATNNNNATC | 1 cut(s) | 513 |
| BsaHI | GRCGYC | 5 cut(s) | 540, 818, 1346, 1638, 1958 |
| BsaI | GGTCTC | 2 cut(s) | 1466, 1559 |
| BsaWI | WCCGGW | 1 cut(s) | 768 |
| Bse118I | RCCGGY | 1 cut(s) | 1290 |
| Bse1I | ACTGG | 3 cut(s) | 218, 1148, 1593 |
| Bse21I | CCTNAGG | 1 cut(s) | 1829 |
| Bse3DI | GCAATG | 1 cut(s) | 978 |
| Bse8I | GATNNNNATC | 1 cut(s) | 513 |
| BseBI | CCWGG | 6 cut(s) | 486, 695, 908, 1192, 1808, 2146 |
| BseGI | GGATG | 4 cut(s) | 703, 735, 814, 2079 |
| BseJI | GATNNNNATC | 1 cut(s) | 513 |
| BseMI | GCAATG | 1 cut(s) | 978 |
| BseMII | CTCAG | 9 cut(s) | 181, 242, 322, 383, 444, 666, 1076, 1820, 2069 |
| BseNI | ACTGG | 3 cut(s) | 218, 1148, 1593 |
| BseRI | GAGGAG | 2 cut(s) | 327, 388 |
| BseSI | GKGCMC | 3 cut(s) | 1288, 1930, 2052 |
| BseX3I | CGGCCG | 1 cut(s) | 1854 |
| BseYI | CCCAGC | 3 cut(s) | 644, 1922, 2096 |
| BsgI | GTGCAG | 2 cut(s) | 1514, 1787 |
| Bsh1236I | CGCG | 5 cut(s) | 603, 1468, 1644, 1853, 2133 |
| Bsh1285I | CGRYCG | 2 cut(s) | 63, 1857 |
| BshNI | GGYRCC | 4 cut(s) | 701, 1345, 1957, 2047 |
| BsiEI | CGRYCG | 2 cut(s) | 63, 1857 |
| BsiHKAI | GWGCWC | 1 cut(s) | 566 |
| BsiHKCI | CYCGRG | 2 cut(s) | 86, 2159 |
| BsiSI | CCGG | 7 cut(s) | 554, 769, 776, 996, 1291, 2014, 2160 |
| BslFI | GGGAC | 7 cut(s) | 460, 1142, 1165, 1243, 1539, 1685, 2079 |
| BsmAI | GTCTC | 8 cut(s) | 168, 229, 309, 370, 431, 1466, 1559, 1699 |
| BsmBI | CGTCTC | 1 cut(s) | 1699 |
| BsmFI | GGGAC | 7 cut(s) | 460, 1142, 1165, 1243, 1539, 1685, 2079 |
| BsmI | GAATGC | 3 cut(s) | 127, 676, 1871 |
| Bso31I | GGTCTC | 2 cut(s) | 1466, 1559 |
| BsoBI | CYCGRG | 2 cut(s) | 86, 2159 |
| Bsp120I | GGGCCC | 2 cut(s) | 1284, 1926 |
| Bsp1286I | GDGCHC | 5 cut(s) | 566, 782, 1288, 1930, 2052 |
| Bsp143I | GATC | 2 cut(s) | 1113, 1278 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 167, 228, 430 |
| BspCNI | CTCAG | 9 cut(s) | 180, 241, 321, 382, 443, 667, 1077, 1821, 2068 |
| BspFNI | CGCG | 5 cut(s) | 603, 1468, 1644, 1853, 2133 |
| BspHI | TCATGA | 1 cut(s) | 1392 |
| BspMAI | CTGCAG | 1 cut(s) | 1728 |
| BspMI | ACCTGC | 1 cut(s) | 1448 |
| BspOI | GCTAGC | 1 cut(s) | 156 |
| BspT107I | GGYRCC | 4 cut(s) | 701, 1345, 1957, 2047 |
| BspTNI | GGTCTC | 2 cut(s) | 1466, 1559 |
| BsrBI | CCGCTC | 5 cut(s) | 1408, 1603, 1732, 1862, 2054 |
| BsrDI | GCAATG | 1 cut(s) | 978 |
| BsrFI | RCCGGY | 1 cut(s) | 1290 |
| BsrI | ACTGG | 3 cut(s) | 218, 1148, 1593 |
| BssAI | RCCGGY | 1 cut(s) | 1290 |
| BssMI | GATC | 2 cut(s) | 1113, 1278 |
| BssNI | GRCGYC | 5 cut(s) | 540, 818, 1346, 1638, 1958 |
| BssT1I | CCWWGG | 4 cut(s) | 868, 1549, 1614, 1743 |
| Bst2UI | CCWGG | 6 cut(s) | 486, 695, 908, 1192, 1808, 2146 |
| Bst4CI | ACNGT | 4 cut(s) | 449, 984, 1015, 1327 |
| Bst6I | CTCTTC | 2 cut(s) | 1251, 1424 |
| BstACI | GRCGYC | 5 cut(s) | 540, 818, 1346, 1638, 1958 |
| BstBAI | YACGTR | 1 cut(s) | 1051 |
| BstDSI | CCRYGG | 3 cut(s) | 1473, 1642, 1851 |
| BstEII | GGTNACC | 1 cut(s) | 1819 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1724 |
| BstF5I | GGATG | 4 cut(s) | 703, 735, 814, 2079 |
| BstFNI | CGCG | 5 cut(s) | 603, 1468, 1644, 1853, 2133 |
| BstH2I | RGCGCY | 4 cut(s) | 1106, 1349, 1807, 1961 |
| BstHHI | GCGC | 9 cut(s) | 603, 795, 1105, 1348, 1470, 1806, 1960, 2077, 2154 |
| BstKTI | GATC | 2 cut(s) | 1116, 1281 |
| BstMAI | GTCTC | 8 cut(s) | 168, 229, 309, 370, 431, 1466, 1559, 1699 |
| BstMBI | GATC | 2 cut(s) | 1113, 1278 |
| BstMCI | CGRYCG | 2 cut(s) | 63, 1857 |
| BstNI | CCWGG | 6 cut(s) | 486, 695, 908, 1192, 1808, 2146 |
| BstNSI | RCATGY | 2 cut(s) | 955, 1948 |
| BstPI | GGTNACC | 1 cut(s) | 1819 |
| BstSFI | CTRYAG | 1 cut(s) | 1724 |
| BstSLI | GKGCMC | 3 cut(s) | 1288, 1930, 2052 |
| BstUI | CGCG | 5 cut(s) | 603, 1468, 1644, 1853, 2133 |
| BstV2I | GAAGAC | 1 cut(s) | 485 |
| BstZI | CGGCCG | 1 cut(s) | 1854 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1829 |
| BtgI | CCRYGG | 3 cut(s) | 1473, 1642, 1851 |
| BtgZI | GCGATG | 2 cut(s) | 1400, 1916 |
| BtrI | CACGTC | 2 cut(s) | 1270, 1693 |
| BtsCI | GGATG | 4 cut(s) | 703, 735, 814, 2079 |
| BtsIMutI | CAGTG | 2 cut(s) | 211, 980 |
| BveI | ACCTGC | 1 cut(s) | 1448 |
| CciI | TCATGA | 1 cut(s) | 1392 |
| CciNI | GCGGCCGC | 1 cut(s) | 1854 |
| CfoI | GCGC | 9 cut(s) | 603, 795, 1105, 1348, 1470, 1806, 1960, 2077, 2154 |
| Cfr10I | RCCGGY | 1 cut(s) | 1290 |
| Cfr13I | GGNCC | 9 cut(s) | 1007, 1152, 1208, 1284, 1285, 1926, 1927, 2093, 2162 |
| Cfr42I | CCGCGG | 2 cut(s) | 1645, 1854 |
| Cfr9I | CCCGGG | 1 cut(s) | 2159 |
| CseI | GACGC | 4 cut(s) | 548, 807, 1646, 1967 |
| Csp6I | GTAC | 3 cut(s) | 1048, 1845, 2006 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1462, 1497 |
| CviAII | CATG | 7 cut(s) | 35, 518, 851, 952, 1393, 1537, 1945 |
| CviQI | GTAC | 3 cut(s) | 1048, 1845, 2006 |
| DinI | GGCGCC | 2 cut(s) | 1347, 1959 |
| DpnI | GATC | 2 cut(s) | 1115, 1280 |
| DpnII | GATC | 2 cut(s) | 1113, 1278 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2091 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1135 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2091 |
| EaeI | YGGCCR | 5 cut(s) | 487, 1611, 1659, 1854, 1997 |
| EagI | CGGCCG | 1 cut(s) | 1854 |
| Eam1104I | CTCTTC | 2 cut(s) | 1251, 1424 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1135 |
| EarI | CTCTTC | 2 cut(s) | 1251, 1424 |
| EciI | GGCGGA | 9 cut(s) | 742, 821, 854, 1034, 1586, 1607, 1634, 1768, 1901 |
| Ecl136II | GAGCTC | 1 cut(s) | 564 |
| EclXI | CGGCCG | 1 cut(s) | 1854 |
| Eco130I | CCWWGG | 4 cut(s) | 868, 1549, 1614, 1743 |
| Eco147I | AGGCCT | 1 cut(s) | 1304 |
| Eco24I | GRGCYC | 4 cut(s) | 566, 782, 1288, 1930 |
| Eco31I | GGTCTC | 2 cut(s) | 1466, 1559 |
| Eco32I | GATATC | 1 cut(s) | 109 |
| Eco47I | GGWCC | 2 cut(s) | 1152, 2093 |
| Eco52I | CGGCCG | 1 cut(s) | 1854 |
| Eco53kI | GAGCTC | 1 cut(s) | 564 |
| Eco57I | CTGAAG | 4 cut(s) | 1480, 1815, 1857, 1970 |
| Eco81I | CCTNAGG | 1 cut(s) | 1829 |
| Eco88I | CYCGRG | 2 cut(s) | 86, 2159 |
| Eco91I | GGTNACC | 1 cut(s) | 1819 |
| EcoICRI | GAGCTC | 1 cut(s) | 564 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1724 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1007, 1152, 1284, 1926, 1927, 2093 |
| EcoO65I | GGTNACC | 1 cut(s) | 1819 |
| EcoRII | CCWGG | 6 cut(s) | 484, 693, 906, 1190, 1806, 2144 |
| EcoRV | GATATC | 1 cut(s) | 109 |
| EcoT14I | CCWWGG | 4 cut(s) | 868, 1549, 1614, 1743 |
| EcoT38I | GRGCYC | 4 cut(s) | 566, 782, 1288, 1930 |
| EgeI | GGCGCC | 2 cut(s) | 1347, 1959 |
| EheI | GGCGCC | 2 cut(s) | 1347, 1959 |
| ErhI | CCWWGG | 4 cut(s) | 868, 1549, 1614, 1743 |
| Esp3I | CGTCTC | 1 cut(s) | 1699 |
| FaeI | CATG | 7 cut(s) | 38, 521, 854, 955, 1396, 1540, 1948 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1289, 1321 |
| FaqI | GGGAC | 7 cut(s) | 460, 1142, 1165, 1243, 1539, 1685, 2079 |
| FatI | CATG | 7 cut(s) | 34, 517, 850, 951, 1392, 1536, 1944 |
| FokI | GGATG | 4 cut(s) | 710, 742, 821, 2066 |
| FriOI | GRGCYC | 4 cut(s) | 566, 782, 1288, 1930 |
| FspBI | CTAG | 8 cut(s) | 153, 567, 830, 887, 1439, 1454, 1931, 2138 |
| FspI | TGCGCA | 1 cut(s) | 2153 |
| GlaI | GCGC | 9 cut(s) | 602, 794, 1104, 1347, 1469, 1805, 1959, 2076, 2153 |
| GsaI | CCCAGC | 3 cut(s) | 648, 1926, 2100 |
| GsuI | CTGGAG | 3 cut(s) | 677, 1541, 1829 |
| HaeII | RGCGCY | 4 cut(s) | 1106, 1349, 1807, 1961 |
| HapII | CCGG | 7 cut(s) | 554, 769, 776, 996, 1291, 2014, 2160 |
| HgaI | GACGC | 4 cut(s) | 548, 807, 1646, 1967 |
| HhaI | GCGC | 9 cut(s) | 603, 795, 1105, 1348, 1470, 1806, 1960, 2077, 2154 |
| Hin1I | GRCGYC | 5 cut(s) | 540, 818, 1346, 1638, 1958 |
| Hin1II | CATG | 7 cut(s) | 38, 521, 854, 955, 1396, 1540, 1948 |
| Hin6I | GCGC | 9 cut(s) | 601, 793, 1103, 1346, 1468, 1804, 1958, 2075, 2152 |
| HinP1I | GCGC | 9 cut(s) | 601, 793, 1103, 1346, 1468, 1804, 1958, 2075, 2152 |
| HincII | GTYRAC | 2 cut(s) | 712, 1240 |
| HindII | GTYRAC | 2 cut(s) | 712, 1240 |
| HpaII | CCGG | 7 cut(s) | 554, 769, 776, 996, 1291, 2014, 2160 |
| HphI | GGTGA | 7 cut(s) | 266, 407, 587, 1156, 1288, 1415, 1826 |
| Hpy166II | GTNNAC | 4 cut(s) | 712, 1048, 1081, 1240 |
| Hpy188I | TCNGA | 7 cut(s) | 71, 311, 372, 801, 939, 2084, 2124 |
| Hpy188III | TCNNGA | 7 cut(s) | 88, 1117, 1247, 1393, 1558, 1666, 1865 |
| Hpy8I | GTNNAC | 4 cut(s) | 712, 1048, 1081, 1240 |
| Hpy99I | CGWCG | 9 cut(s) | 99, 542, 608, 805, 823, 1321, 1640, 2088, 2124 |
| HpyCH4III | ACNGT | 4 cut(s) | 449, 984, 1015, 1327 |
| HpyCH4IV | ACGT | 5 cut(s) | 764, 1050, 1269, 1656, 1692 |
| HpyCH4V | TGCA | 8 cut(s) | 34, 125, 143, 850, 1068, 1531, 1726, 1768 |
| HpySE526I | ACGT | 5 cut(s) | 764, 1050, 1269, 1656, 1692 |
| Hsp92I | GRCGYC | 5 cut(s) | 540, 818, 1346, 1638, 1958 |
| Hsp92II | CATG | 7 cut(s) | 38, 521, 854, 955, 1396, 1540, 1948 |
| HspAI | GCGC | 9 cut(s) | 601, 793, 1103, 1346, 1468, 1804, 1958, 2075, 2152 |
| KasI | GGCGCC | 2 cut(s) | 1345, 1957 |
| KflI | GGGWCCC | 1 cut(s) | 2093 |
| KroI | GCCGGC | 1 cut(s) | 1290 |
| KroNI | GCCGGC | 1 cut(s) | 1292 |
| KspI | CCGCGG | 2 cut(s) | 1645, 1854 |
| Kzo9I | GATC | 2 cut(s) | 1113, 1278 |
| LmnI | GCTCC | 7 cut(s) | 28, 38, 618, 644, 1100, 1600, 1729 |
| MaeI | CTAG | 8 cut(s) | 153, 567, 830, 887, 1439, 1454, 1931, 2138 |
| MaeII | ACGT | 5 cut(s) | 764, 1050, 1269, 1656, 1692 |
| MalI | GATC | 2 cut(s) | 1115, 1280 |
| MbiI | CCGCTC | 5 cut(s) | 1408, 1603, 1732, 1862, 2054 |
| MboI | GATC | 2 cut(s) | 1113, 1278 |
| MboII | GAAGA | 8 cut(s) | 202, 343, 485, 662, 665, 1268, 1309, 1411 |
| MfeI | CAATTG | 1 cut(s) | 1479 |
| MhlI | GDGCHC | 5 cut(s) | 566, 782, 1288, 1930, 2052 |
| MlsI | TGGCCA | 2 cut(s) | 1613, 1661 |
| MluCI | AATT | 3 cut(s) | 11, 917, 1479 |
| MluNI | TGGCCA | 2 cut(s) | 1613, 1661 |
| Mly113I | GGCGCC | 2 cut(s) | 1346, 1958 |
| MlyI | GAGTC | 7 cut(s) | 686, 1124, 1235, 1361, 1784, 1919, 2097 |
| MmeI | TCCRAC | 3 cut(s) | 824, 2102, 2107 |
| Mox20I | TGGCCA | 2 cut(s) | 1613, 1661 |
| MroNI | GCCGGC | 1 cut(s) | 1290 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1026 |
| MscI | TGGCCA | 2 cut(s) | 1613, 1661 |
| MseI | TTAA | 4 cut(s) | 549, 1218, 1224, 1893 |
| MslI | CAYNNNNRTG | 3 cut(s) | 752, 1763, 1943 |
| Msp20I | TGGCCA | 2 cut(s) | 1613, 1661 |
| MspI | CCGG | 7 cut(s) | 554, 769, 776, 996, 1291, 2014, 2160 |
| MunI | CAATTG | 1 cut(s) | 1479 |
| Mva1269I | GAATGC | 3 cut(s) | 127, 676, 1871 |
| MvaI | CCWGG | 6 cut(s) | 486, 695, 908, 1192, 1808, 2146 |
| MvnI | CGCG | 5 cut(s) | 603, 1468, 1644, 1853, 2133 |
| NaeI | GCCGGC | 1 cut(s) | 1292 |
| NarI | GGCGCC | 2 cut(s) | 1346, 1958 |
| NciI | CCSGG | 5 cut(s) | 555, 777, 997, 2160, 2161 |
| NdeII | GATC | 2 cut(s) | 1113, 1278 |
| NgoMIV | GCCGGC | 1 cut(s) | 1290 |
| NheI | GCTAGC | 1 cut(s) | 152 |
| NlaIII | CATG | 7 cut(s) | 38, 521, 854, 955, 1396, 1540, 1948 |
| NmeAIII | GCCGAG | 4 cut(s) | 1085, 1402, 1481, 2017 |
| NotI | GCGGCCGC | 1 cut(s) | 1854 |
| NsbI | TGCGCA | 1 cut(s) | 2153 |
| NspI | RCATGY | 2 cut(s) | 955, 1948 |
| PagI | TCATGA | 1 cut(s) | 1392 |
| PceI | AGGCCT | 1 cut(s) | 1304 |
| PciI | ACATGT | 1 cut(s) | 951 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1662 |
| PctI | GAATGC | 3 cut(s) | 127, 676, 1871 |
| PdiI | GCCGGC | 1 cut(s) | 1292 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1026 |
| PfeI | GAWTC | 4 cut(s) | 91, 823, 1120, 2141 |
| PflFI | GACNNNGTC | 5 cut(s) | 179, 240, 320, 381, 1909 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 907, 954 |
| PfoI | TCCNGGA | 1 cut(s) | 693 |
| PleI | GAGTC | 7 cut(s) | 685, 1124, 1235, 1361, 1783, 1918, 2097 |
| PluTI | GGCGCC | 2 cut(s) | 1349, 1961 |
| PpsI | GAGTC | 7 cut(s) | 685, 1124, 1235, 1361, 1783, 1918, 2097 |
| Ppu21I | YACGTR | 1 cut(s) | 1051 |
| PpuMI | RGGWCCY | 2 cut(s) | 1152, 2093 |
| PscI | ACATGT | 1 cut(s) | 951 |
| PshBI | ATTAAT | 1 cut(s) | 549 |
| Psp124BI | GAGCTC | 1 cut(s) | 566 |
| Psp5II | RGGWCCY | 2 cut(s) | 1152, 2093 |
| Psp6I | CCWGG | 6 cut(s) | 484, 693, 906, 1190, 1806, 2144 |
| PspEI | GGTNACC | 1 cut(s) | 1819 |
| PspFI | CCCAGC | 3 cut(s) | 644, 1922, 2096 |
| PspGI | CCWGG | 6 cut(s) | 484, 693, 906, 1190, 1806, 2144 |
| PspOMI | GGGCCC | 2 cut(s) | 1284, 1926 |
| PspPI | GGNCC | 9 cut(s) | 1007, 1152, 1208, 1284, 1285, 1926, 1927, 2093, 2162 |
| PspPPI | RGGWCCY | 2 cut(s) | 1152, 2093 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1373, 1405 |
| PstI | CTGCAG | 1 cut(s) | 1728 |
| PsyI | GACNNNGTC | 5 cut(s) | 179, 240, 320, 381, 1909 |
| RsaI | GTAC | 3 cut(s) | 1049, 1846, 2007 |
| RsaNI | GTAC | 3 cut(s) | 1048, 1845, 2006 |
| RseI | CAYNNNNRTG | 3 cut(s) | 752, 1763, 1943 |
| SacI | GAGCTC | 1 cut(s) | 566 |
| SacII | CCGCGG | 2 cut(s) | 1645, 1854 |
| SaqAI | TTAA | 4 cut(s) | 549, 1218, 1224, 1893 |
| Sau3AI | GATC | 2 cut(s) | 1113, 1278 |
| Sau96I | GGNCC | 9 cut(s) | 1007, 1152, 1208, 1284, 1285, 1926, 1927, 2093, 2162 |
| ScaI | AGTACT | 1 cut(s) | 1846 |
| SchI | GAGTC | 7 cut(s) | 686, 1124, 1235, 1361, 1784, 1919, 2097 |
| SduI | GDGCHC | 5 cut(s) | 566, 782, 1288, 1930, 2052 |
| SfcI | CTRYAG | 1 cut(s) | 1724 |
| SfoI | GGCGCC | 2 cut(s) | 1347, 1959 |
| Sfr303I | CCGCGG | 2 cut(s) | 1645, 1854 |
| SgrBI | CCGCGG | 2 cut(s) | 1645, 1854 |
| SinI | GGWCC | 2 cut(s) | 1152, 2093 |
| SmaI | CCCGGG | 1 cut(s) | 2161 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 752, 1763, 1943 |
| Sse9I | AATT | 3 cut(s) | 11, 917, 1479 |
| SseBI | AGGCCT | 1 cut(s) | 1304 |
| SspDI | GGCGCC | 2 cut(s) | 1345, 1957 |
| SspMI | CTAG | 8 cut(s) | 153, 567, 830, 887, 1439, 1454, 1931, 2138 |
| SstI | GAGCTC | 1 cut(s) | 566 |
| StuI | AGGCCT | 1 cut(s) | 1304 |
| StyI | CCWWGG | 4 cut(s) | 868, 1549, 1614, 1743 |
| TaaI | ACNGT | 4 cut(s) | 449, 984, 1015, 1327 |
| TaiI | ACGT | 5 cut(s) | 767, 1053, 1272, 1659, 1695 |
| TaqI | TCGA | 8 cut(s) | 545, 751, 821, 1116, 1196, 1319, 1665, 1964 |
| TaqII | GACCGA | 2 cut(s) | 923, 1922 |
| TasI | AATT | 3 cut(s) | 11, 917, 1479 |
| TatI | WGTACW | 1 cut(s) | 1844 |
| TfiI | GAWTC | 4 cut(s) | 91, 823, 1120, 2141 |
| Tru1I | TTAA | 4 cut(s) | 549, 1218, 1224, 1893 |
| Tru9I | TTAA | 4 cut(s) | 549, 1218, 1224, 1893 |
| TscAI | CASTG | 2 cut(s) | 218, 987 |
| TspDTI | ATGAA | 5 cut(s) | 746, 770, 989, 1381, 1701 |
| TspGWI | ACGGA | 2 cut(s) | 1305, 2101 |
| TspMI | CCCGGG | 1 cut(s) | 2159 |
| TspRI | CASTG | 2 cut(s) | 218, 987 |
| Tth111I | GACNNNGTC | 5 cut(s) | 179, 240, 320, 381, 1909 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 907, 954 |
| VpaK11BI | GGWCC | 2 cut(s) | 1152, 2093 |
| VspI | ATTAAT | 1 cut(s) | 549 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1724 |
| XapI | RAATTY | 1 cut(s) | 917 |
| XceI | RCATGY | 2 cut(s) | 955, 1948 |
| XmaI | CCCGGG | 1 cut(s) | 2159 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1026 |
| XspI | CTAG | 8 cut(s) | 153, 567, 830, 887, 1439, 1454, 1931, 2138 |
| ZrmI | AGTACT | 1 cut(s) | 1846 |