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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc36I | ACCTGC | 1 cut(s) | 670 |
| AccB1I | GGYRCC | 3 cut(s) | 335, 1222, 1973 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 558, 2080 |
| AccBSI | CCGCTC | 5 cut(s) | 244, 1420, 1447, 1585, 1726 |
| AccI | GTMKAC | 1 cut(s) | 1484 |
| AccII | CGCG | 7 cut(s) | 187, 870, 877, 1029, 1257, 1848, 2121 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AclWI | GGATC | 3 cut(s) | 49, 421, 2131 |
| AcoI | YGGCCR | 2 cut(s) | 3, 1710 |
| AcsI | RAATTY | 2 cut(s) | 73, 507 |
| AcuI | CTGAAG | 6 cut(s) | 66, 300, 410, 1349, 1492, 2184 |
| AcyI | GRCGYC | 5 cut(s) | 9, 1005, 1375, 1562, 1663 |
| AfaI | GTAC | 2 cut(s) | 1061, 2092 |
| AflIII | ACRYGT | 1 cut(s) | 555 |
| AgsI | TTSAA | 3 cut(s) | 24, 506, 974 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2106 |
| AjnI | CCWGG | 9 cut(s) | 327, 471, 699, 804, 1047, 1067, 1250, 1635, 1731 |
| AluBI | AGCT | 6 cut(s) | 394, 490, 715, 1108, 1464, 1591 |
| AluI | AGCT | 6 cut(s) | 394, 490, 715, 1108, 1464, 1591 |
| Alw21I | GWGCWC | 4 cut(s) | 327, 456, 1266, 1593 |
| Alw26I | GTCTC | 4 cut(s) | 926, 1046, 1211, 2093 |
| Alw44I | GTGCAC | 2 cut(s) | 452, 1262 |
| AlwI | GGATC | 3 cut(s) | 49, 421, 2131 |
| Ama87I | CYCGRG | 2 cut(s) | 1330, 1575 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| AoxI | GGCC | 8 cut(s) | 3, 420, 1334, 1609, 1674, 1710, 1920, 2071 |
| ApaLI | GTGCAC | 2 cut(s) | 452, 1262 |
| ApoI | RAATTY | 2 cut(s) | 73, 507 |
| AspS9I | GGNCC | 5 cut(s) | 756, 798, 1024, 1609, 1729 |
| AsuC2I | CCSGG | 3 cut(s) | 984, 1576, 1577 |
| AsuHPI | GGTGA | 3 cut(s) | 1105, 1184, 1288 |
| AvaI | CYCGRG | 2 cut(s) | 1330, 1575 |
| AvaII | GGWCC | 4 cut(s) | 756, 798, 1024, 1729 |
| AxyI | CCTNAGG | 1 cut(s) | 1829 |
| BaeGI | GKGCMC | 4 cut(s) | 456, 1266, 1527, 1978 |
| BanI | GGYRCC | 3 cut(s) | 335, 1222, 1973 |
| BanII | GRGCYC | 2 cut(s) | 1331, 1593 |
| BauI | CACGAG | 2 cut(s) | 455, 963 |
| BbsI | GAAGAC | 2 cut(s) | 1091, 1378 |
| Bbv12I | GWGCWC | 4 cut(s) | 327, 456, 1266, 1593 |
| BccI | CCATC | 3 cut(s) | 1170, 1964, 2081 |
| BceAI | ACGGC | 9 cut(s) | 349, 362, 434, 953, 984, 1172, 1475, 1530, 1697 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1667, 1701 |
| BciT130I | CCWGG | 9 cut(s) | 329, 473, 701, 806, 1049, 1069, 1252, 1637, 1733 |
| BcnI | CCSGG | 3 cut(s) | 984, 1576, 1577 |
| BcoDI | GTCTC | 4 cut(s) | 926, 1046, 1211, 2093 |
| BfaI | CTAG | 4 cut(s) | 131, 201, 491, 1556 |
| BfmI | CTRYAG | 1 cut(s) | 1613 |
| BfoI | RGCGCY | 6 cut(s) | 578, 664, 710, 1244, 1904, 2004 |
| BfuAI | ACCTGC | 1 cut(s) | 670 |
| BglII | AGATCT | 1 cut(s) | 543 |
| BlpI | GCTNAGC | 1 cut(s) | 1115 |
| Bme18I | GGWCC | 4 cut(s) | 756, 798, 1024, 1729 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2106 |
| BmeT110I | CYCGRG | 2 cut(s) | 1330, 1575 |
| BmgT120I | GGNCC | 5 cut(s) | 756, 798, 1024, 1609, 1729 |
| BmrI | ACTGGG | 1 cut(s) | 2032 |
| BmsI | GCATC | 4 cut(s) | 295, 558, 1684, 1921 |
| BmuI | ACTGGG | 1 cut(s) | 2032 |
| BpiI | GAAGAC | 2 cut(s) | 1091, 1378 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 407, 439, 2181 |
| BpmI | CTGGAG | 2 cut(s) | 311, 1070 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1592, 1926 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1115 |
| BpuMI | CCSGG | 3 cut(s) | 984, 1576, 1577 |
| BsaHI | GRCGYC | 5 cut(s) | 9, 1005, 1375, 1562, 1663 |
| BsaI | GGTCTC | 2 cut(s) | 1046, 2093 |
| BsaWI | WCCGGW | 1 cut(s) | 38 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 803, 833, 1043, 1073, 1415, 1445 |
| Bse118I | RCCGGY | 1 cut(s) | 1357 |
| Bse1I | ACTGG | 5 cut(s) | 267, 651, 934, 1207, 2038 |
| Bse21I | CCTNAGG | 1 cut(s) | 1829 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 9 cut(s) | 329, 473, 701, 806, 1049, 1069, 1252, 1637, 1733 |
| BseGI | GGATG | 6 cut(s) | 310, 369, 1819, 1936, 2020, 2092 |
| BseMII | CTCAG | 9 cut(s) | 300, 719, 1023, 1094, 1116, 1606, 1820, 1827, 1976 |
| BseNI | ACTGG | 5 cut(s) | 267, 651, 934, 1207, 2038 |
| BseRI | GAGGAG | 2 cut(s) | 428, 1613 |
| BseSI | GKGCMC | 4 cut(s) | 456, 1266, 1527, 1978 |
| BseYI | CCCAGC | 4 cut(s) | 933, 1282, 2022, 2057 |
| BsgI | GTGCAG | 2 cut(s) | 282, 1526 |
| Bsh1236I | CGCG | 7 cut(s) | 187, 870, 877, 1029, 1257, 1848, 2121 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1488, 1857 |
| BshFI | GGCC | 8 cut(s) | 5, 422, 1336, 1611, 1676, 1712, 1922, 2073 |
| BshNI | GGYRCC | 3 cut(s) | 335, 1222, 1973 |
| BsiEI | CGRYCG | 2 cut(s) | 1488, 1857 |
| BsiHKAI | GWGCWC | 4 cut(s) | 327, 456, 1266, 1593 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1330, 1575 |
| BsiSI | CCGG | 5 cut(s) | 39, 983, 1358, 1576, 2156 |
| BslFI | GGGAC | 6 cut(s) | 176, 769, 1634, 1742, 1759, 2035 |
| BsmAI | GTCTC | 4 cut(s) | 926, 1046, 1211, 2093 |
| BsmBI | CGTCTC | 2 cut(s) | 926, 1211 |
| BsmFI | GGGAC | 6 cut(s) | 176, 769, 1634, 1742, 1759, 2035 |
| BsnI | GGCC | 8 cut(s) | 5, 422, 1336, 1611, 1676, 1712, 1922, 2073 |
| Bso31I | GGTCTC | 2 cut(s) | 1046, 2093 |
| BsoBI | CYCGRG | 2 cut(s) | 1330, 1575 |
| Bsp1286I | GDGCHC | 7 cut(s) | 327, 456, 1266, 1331, 1527, 1593, 1978 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp143I | GATC | 7 cut(s) | 41, 426, 543, 949, 1035, 1786, 2123 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1115 |
| Bsp19I | CCATGG | 1 cut(s) | 1020 |
| BspANI | GGCC | 8 cut(s) | 5, 422, 1336, 1611, 1676, 1712, 1922, 2073 |
| BspCNI | CTCAG | 9 cut(s) | 301, 720, 1024, 1093, 1117, 1605, 1821, 1828, 1975 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspFNI | CGCG | 7 cut(s) | 187, 870, 877, 1029, 1257, 1848, 2121 |
| BspMI | ACCTGC | 1 cut(s) | 670 |
| BspPI | GGATC | 3 cut(s) | 49, 421, 2131 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BspT107I | GGYRCC | 3 cut(s) | 335, 1222, 1973 |
| BspTNI | GGTCTC | 2 cut(s) | 1046, 2093 |
| BsrBI | CCGCTC | 5 cut(s) | 244, 1420, 1447, 1585, 1726 |
| BsrFI | RCCGGY | 1 cut(s) | 1357 |
| BsrI | ACTGG | 5 cut(s) | 267, 651, 934, 1207, 2038 |
| BssAI | RCCGGY | 1 cut(s) | 1357 |
| BssMI | GATC | 7 cut(s) | 41, 426, 543, 949, 1035, 1786, 2123 |
| BssNI | GRCGYC | 5 cut(s) | 9, 1005, 1375, 1562, 1663 |
| BssSI | CACGAG | 2 cut(s) | 455, 963 |
| BssT1I | CCWWGG | 3 cut(s) | 664, 1020, 2079 |
| Bst2BI | CACGAG | 2 cut(s) | 455, 963 |
| Bst2UI | CCWGG | 9 cut(s) | 329, 473, 701, 806, 1049, 1069, 1252, 1637, 1733 |
| Bst4CI | ACNGT | 7 cut(s) | 159, 409, 619, 1090, 1222, 1300, 1682 |
| Bst6I | CTCTTC | 2 cut(s) | 234, 855 |
| BstACI | GRCGYC | 5 cut(s) | 9, 1005, 1375, 1562, 1663 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1694 |
| BstDSI | CCRYGG | 5 cut(s) | 158, 1020, 1134, 1699, 2119 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1670 |
| BstF5I | GGATG | 6 cut(s) | 310, 369, 1819, 1936, 2020, 2092 |
| BstFNI | CGCG | 7 cut(s) | 187, 870, 877, 1029, 1257, 1848, 2121 |
| BstH2I | RGCGCY | 6 cut(s) | 578, 664, 710, 1244, 1904, 2004 |
| BstKTI | GATC | 7 cut(s) | 44, 429, 546, 952, 1038, 1789, 2126 |
| BstMAI | GTCTC | 4 cut(s) | 926, 1046, 1211, 2093 |
| BstMBI | GATC | 7 cut(s) | 41, 426, 543, 949, 1035, 1786, 2123 |
| BstMCI | CGRYCG | 2 cut(s) | 1488, 1857 |
| BstNI | CCWGG | 9 cut(s) | 329, 473, 701, 806, 1049, 1069, 1252, 1637, 1733 |
| BstNSI | RCATGY | 1 cut(s) | 1357 |
| BstSFI | CTRYAG | 1 cut(s) | 1613 |
| BstSLI | GKGCMC | 4 cut(s) | 456, 1266, 1527, 1978 |
| BstUI | CGCG | 7 cut(s) | 187, 870, 877, 1029, 1257, 1848, 2121 |
| BstV2I | GAAGAC | 2 cut(s) | 1091, 1378 |
| BstX2I | RGATCY | 3 cut(s) | 41, 543, 2123 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1251 |
| BstYI | RGATCY | 3 cut(s) | 41, 543, 2123 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1829 |
| BsuRI | GGCC | 8 cut(s) | 5, 422, 1336, 1611, 1676, 1712, 1922, 2073 |
| BtgI | CCRYGG | 5 cut(s) | 158, 1020, 1134, 1699, 2119 |
| BtsCI | GGATG | 6 cut(s) | 310, 369, 1819, 1936, 2020, 2092 |
| BtsI | GCAGTG | 2 cut(s) | 34, 116 |
| BtsIMutI | CAGTG | 3 cut(s) | 34, 116, 274 |
| BveI | ACCTGC | 1 cut(s) | 670 |
| Cfr10I | RCCGGY | 1 cut(s) | 1357 |
| Cfr13I | GGNCC | 5 cut(s) | 756, 798, 1024, 1609, 1729 |
| Cfr42I | CCGCGG | 1 cut(s) | 2122 |
| Cfr9I | CCCGGG | 1 cut(s) | 1575 |
| CseI | GACGC | 8 cut(s) | 80, 176, 386, 1013, 1383, 1551, 1671, 2168 |
| Csp6I | GTAC | 2 cut(s) | 1060, 2091 |
| CviAII | CATG | 5 cut(s) | 739, 1021, 1057, 1147, 1354 |
| CviQI | GTAC | 2 cut(s) | 1060, 2091 |
| DpnI | GATC | 7 cut(s) | 43, 428, 545, 951, 1037, 1788, 2125 |
| DpnII | GATC | 7 cut(s) | 41, 426, 543, 949, 1035, 1786, 2123 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2106 |
| EaeI | YGGCCR | 2 cut(s) | 3, 1710 |
| Eam1104I | CTCTTC | 2 cut(s) | 234, 855 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2106 |
| EarI | CTCTTC | 2 cut(s) | 234, 855 |
| EciI | GGCGGA | 6 cut(s) | 390, 458, 638, 910, 969, 1901 |
| Ecl136II | GAGCTC | 1 cut(s) | 1591 |
| Eco130I | CCWWGG | 3 cut(s) | 664, 1020, 2079 |
| Eco147I | AGGCCT | 2 cut(s) | 422, 1336 |
| Eco24I | GRGCYC | 2 cut(s) | 1331, 1593 |
| Eco31I | GGTCTC | 2 cut(s) | 1046, 2093 |
| Eco47I | GGWCC | 4 cut(s) | 756, 798, 1024, 1729 |
| Eco53kI | GAGCTC | 1 cut(s) | 1591 |
| Eco57I | CTGAAG | 6 cut(s) | 66, 300, 410, 1349, 1492, 2184 |
| Eco81I | CCTNAGG | 1 cut(s) | 1829 |
| Eco88I | CYCGRG | 2 cut(s) | 1330, 1575 |
| EcoICRI | GAGCTC | 1 cut(s) | 1591 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1670 |
| EcoO109I | RGGNCCY | 2 cut(s) | 756, 1729 |
| EcoRII | CCWGG | 9 cut(s) | 327, 471, 699, 804, 1047, 1067, 1250, 1635, 1731 |
| EcoT14I | CCWWGG | 3 cut(s) | 664, 1020, 2079 |
| EcoT38I | GRGCYC | 2 cut(s) | 1331, 1593 |
| ErhI | CCWWGG | 3 cut(s) | 664, 1020, 2079 |
| Esp3I | CGTCTC | 2 cut(s) | 926, 1211 |
| FaeI | CATG | 5 cut(s) | 742, 1024, 1060, 1150, 1357 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1987, 2019 |
| FaqI | GGGAC | 6 cut(s) | 176, 769, 1634, 1742, 1759, 2035 |
| FatI | CATG | 5 cut(s) | 738, 1020, 1056, 1146, 1353 |
| FblI | GTMKAC | 1 cut(s) | 1484 |
| FokI | GGATG | 6 cut(s) | 317, 376, 1826, 1943, 2027, 2099 |
| FriOI | GRGCYC | 2 cut(s) | 1331, 1593 |
| FspBI | CTAG | 4 cut(s) | 131, 201, 491, 1556 |
| GsaI | CCCAGC | 4 cut(s) | 937, 1286, 2026, 2061 |
| GsuI | CTGGAG | 2 cut(s) | 311, 1070 |
| HaeII | RGCGCY | 6 cut(s) | 578, 664, 710, 1244, 1904, 2004 |
| HaeIII | GGCC | 8 cut(s) | 5, 422, 1336, 1611, 1676, 1712, 1922, 2073 |
| HapII | CCGG | 5 cut(s) | 39, 983, 1358, 1576, 2156 |
| HgaI | GACGC | 8 cut(s) | 80, 176, 386, 1013, 1383, 1551, 1671, 2168 |
| Hin1I | GRCGYC | 5 cut(s) | 9, 1005, 1375, 1562, 1663 |
| Hin1II | CATG | 5 cut(s) | 742, 1024, 1060, 1150, 1357 |
| HincII | GTYRAC | 3 cut(s) | 382, 1485, 1495 |
| HindII | GTYRAC | 3 cut(s) | 382, 1485, 1495 |
| HpaII | CCGG | 5 cut(s) | 39, 983, 1358, 1576, 2156 |
| HphI | GGTGA | 3 cut(s) | 1105, 1184, 1288 |
| Hpy166II | GTNNAC | 7 cut(s) | 382, 454, 685, 1096, 1264, 1485, 1495 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 1083, 1126, 2044, 2128 |
| Hpy188III | TCNNGA | 3 cut(s) | 39, 191, 1193 |
| Hpy8I | GTNNAC | 7 cut(s) | 382, 454, 685, 1096, 1264, 1485, 1495 |
| Hpy99I | CGWCG | 9 cut(s) | 11, 409, 778, 820, 1324, 1567, 1665, 1718, 1942 |
| HpyAV | CCTTC | 9 cut(s) | 275, 412, 493, 512, 769, 1516, 1891, 2159, 2174 |
| HpyCH4III | ACNGT | 7 cut(s) | 159, 409, 619, 1090, 1222, 1300, 1682 |
| HpyCH4IV | ACGT | 4 cut(s) | 9, 165, 555, 818 |
| HpySE526I | ACGT | 4 cut(s) | 9, 165, 555, 818 |
| Hsp92I | GRCGYC | 5 cut(s) | 9, 1005, 1375, 1562, 1663 |
| Hsp92II | CATG | 5 cut(s) | 742, 1024, 1060, 1150, 1357 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| KspI | CCGCGG | 1 cut(s) | 2122 |
| Kzo9I | GATC | 7 cut(s) | 41, 426, 543, 949, 1035, 1786, 2123 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LmnI | GCTCC | 9 cut(s) | 330, 704, 811, 1312, 1588, 1657, 1762, 1842, 1939 |
| LweI | GCATC | 4 cut(s) | 295, 558, 1684, 1921 |
| MaeI | CTAG | 4 cut(s) | 131, 201, 491, 1556 |
| MaeII | ACGT | 4 cut(s) | 9, 165, 555, 818 |
| MaeIII | GTNAC | 3 cut(s) | 478, 1001, 1172 |
| MalI | GATC | 7 cut(s) | 43, 428, 545, 951, 1037, 1788, 2125 |
| MbiI | CCGCTC | 5 cut(s) | 244, 1420, 1447, 1585, 1726 |
| MboI | GATC | 7 cut(s) | 41, 426, 543, 949, 1035, 1786, 2123 |
| MboII | GAAGA | 4 cut(s) | 251, 872, 1096, 1383 |
| MflI | RGATCY | 3 cut(s) | 41, 543, 2123 |
| MhlI | GDGCHC | 7 cut(s) | 327, 456, 1266, 1331, 1527, 1593, 1978 |
| MluCI | AATT | 3 cut(s) | 73, 507, 1748 |
| MlyI | GAGTC | 8 cut(s) | 77, 320, 700, 844, 955, 1877, 2012, 2023 |
| MmeI | TCCRAC | 4 cut(s) | 825, 1290, 1740, 2022 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MseI | TTAA | 3 cut(s) | 828, 843, 1478 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1358 |
| MspA1I | CMGCKG | 5 cut(s) | 221, 1862, 2012, 2026, 2121 |
| MspI | CCGG | 5 cut(s) | 39, 983, 1358, 1576, 2156 |
| MvaI | CCWGG | 9 cut(s) | 329, 473, 701, 806, 1049, 1069, 1252, 1637, 1733 |
| MvnI | CGCG | 7 cut(s) | 187, 870, 877, 1029, 1257, 1848, 2121 |
| NciI | CCSGG | 3 cut(s) | 984, 1576, 1577 |
| NcoI | CCATGG | 1 cut(s) | 1020 |
| NdeII | GATC | 7 cut(s) | 41, 426, 543, 949, 1035, 1786, 2123 |
| NlaIII | CATG | 5 cut(s) | 742, 1024, 1060, 1150, 1357 |
| NmeAIII | GCCGAG | 1 cut(s) | 1423 |
| NmuCI | GTSAC | 3 cut(s) | 478, 1001, 1172 |
| NspI | RCATGY | 1 cut(s) | 1357 |
| PaeI | GCATGC | 1 cut(s) | 1357 |
| PaeR7I | CTCGAG | 1 cut(s) | 1330 |
| PceI | AGGCCT | 2 cut(s) | 422, 1336 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 92, 184, 339, 874, 1328 |
| PfeI | GAWTC | 3 cut(s) | 35, 734, 898 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 558, 2080 |
| PfoI | TCCNGGA | 2 cut(s) | 327, 1047 |
| PleI | GAGTC | 8 cut(s) | 77, 319, 699, 844, 955, 1876, 2012, 2023 |
| PpsI | GAGTC | 8 cut(s) | 77, 319, 699, 844, 955, 1876, 2012, 2023 |
| PpuMI | RGGWCCY | 2 cut(s) | 756, 1729 |
| Psp124BI | GAGCTC | 1 cut(s) | 1593 |
| Psp5II | RGGWCCY | 2 cut(s) | 756, 1729 |
| Psp6I | CCWGG | 9 cut(s) | 327, 471, 699, 804, 1047, 1067, 1250, 1635, 1731 |
| PspFI | CCCAGC | 4 cut(s) | 933, 1282, 2022, 2057 |
| PspGI | CCWGG | 9 cut(s) | 327, 471, 699, 804, 1047, 1067, 1250, 1635, 1731 |
| PspPI | GGNCC | 5 cut(s) | 756, 798, 1024, 1609, 1729 |
| PspPPI | RGGWCCY | 2 cut(s) | 756, 1729 |
| PspXI | VCTCGAGB | 1 cut(s) | 1330 |
| PsuI | RGATCY | 3 cut(s) | 41, 543, 2123 |
| RsaI | GTAC | 2 cut(s) | 1061, 2092 |
| RsaNI | GTAC | 2 cut(s) | 1060, 2091 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1358 |
| SacI | GAGCTC | 1 cut(s) | 1593 |
| SacII | CCGCGG | 1 cut(s) | 2122 |
| SalI | GTCGAC | 1 cut(s) | 1483 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 3 cut(s) | 828, 843, 1478 |
| Sau3AI | GATC | 7 cut(s) | 41, 426, 543, 949, 1035, 1786, 2123 |
| Sau96I | GGNCC | 5 cut(s) | 756, 798, 1024, 1609, 1729 |
| SchI | GAGTC | 8 cut(s) | 77, 320, 700, 844, 955, 1877, 2012, 2023 |
| SduI | GDGCHC | 7 cut(s) | 327, 456, 1266, 1331, 1527, 1593, 1978 |
| SfaNI | GCATC | 4 cut(s) | 295, 558, 1684, 1921 |
| SfcI | CTRYAG | 1 cut(s) | 1613 |
| Sfr274I | CTCGAG | 1 cut(s) | 1330 |
| Sfr303I | CCGCGG | 1 cut(s) | 2122 |
| SgrBI | CCGCGG | 1 cut(s) | 2122 |
| SinI | GGWCC | 4 cut(s) | 756, 798, 1024, 1729 |
| SlaI | CTCGAG | 1 cut(s) | 1330 |
| SmaI | CCCGGG | 1 cut(s) | 1577 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1358 |
| SmlI | CTYRAG | 1 cut(s) | 1330 |
| SmoI | CTYRAG | 1 cut(s) | 1330 |
| SphI | GCATGC | 1 cut(s) | 1357 |
| Sse9I | AATT | 3 cut(s) | 73, 507, 1748 |
| SseBI | AGGCCT | 2 cut(s) | 422, 1336 |
| SspMI | CTAG | 4 cut(s) | 131, 201, 491, 1556 |
| SstI | GAGCTC | 1 cut(s) | 1593 |
| StuI | AGGCCT | 2 cut(s) | 422, 1336 |
| StyI | CCWWGG | 3 cut(s) | 664, 1020, 2079 |
| TaaI | ACNGT | 7 cut(s) | 159, 409, 619, 1090, 1222, 1300, 1682 |
| TaiI | ACGT | 4 cut(s) | 12, 168, 558, 821 |
| TaqI | TCGA | 7 cut(s) | 425, 948, 1038, 1331, 1484, 1565, 2178 |
| TaqII | GACCGA | 1 cut(s) | 1922 |
| TasI | AATT | 3 cut(s) | 73, 507, 1748 |
| TfiI | GAWTC | 3 cut(s) | 35, 734, 898 |
| Tru1I | TTAA | 3 cut(s) | 828, 843, 1478 |
| Tru9I | TTAA | 3 cut(s) | 828, 843, 1478 |
| TscAI | CASTG | 3 cut(s) | 34, 123, 274 |
| TseFI | GTSAC | 3 cut(s) | 478, 1001, 1172 |
| Tsp45I | GTSAC | 3 cut(s) | 478, 1001, 1172 |
| TspDTI | ATGAA | 1 cut(s) | 1830 |
| TspGWI | ACGGA | 2 cut(s) | 84, 1926 |
| TspMI | CCCGGG | 1 cut(s) | 1575 |
| TspRI | CASTG | 3 cut(s) | 34, 123, 274 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 558, 2080 |
| VneI | GTGCAC | 2 cut(s) | 452, 1262 |
| VpaK11BI | GGWCC | 4 cut(s) | 756, 798, 1024, 1729 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1670 |
| XapI | RAATTY | 2 cut(s) | 73, 507 |
| XceI | RCATGY | 1 cut(s) | 1357 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1163 |
| XhoI | CTCGAG | 1 cut(s) | 1330 |
| XmaI | CCCGGG | 1 cut(s) | 1575 |
| XmiI | GTMKAC | 1 cut(s) | 1484 |
| XspI | CTAG | 4 cut(s) | 131, 201, 491, 1556 |
| ZraI | GACGTC | 1 cut(s) | 10 |