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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 887 |
| AccBSI | CCGCTC | 5 cut(s) | 530, 606, 744, 885, 906 |
| AccI | GTMKAC | 2 cut(s) | 346, 643 |
| AccII | CGCG | 4 cut(s) | 56, 284, 384, 458 |
| AclI | AACGTT | 1 cut(s) | 872 |
| AclWI | GGATC | 2 cut(s) | 953, 972 |
| AcuI | CTGAAG | 2 cut(s) | 376, 967 |
| AcyI | GRCGYC | 1 cut(s) | 721 |
| AfaI | GTAC | 3 cut(s) | 278, 381, 525 |
| AflIII | ACRYGT | 1 cut(s) | 929 |
| AgeI | ACCGGT | 1 cut(s) | 229 |
| AgsI | TTSAA | 1 cut(s) | 39 |
| AjiI | CACGTC | 1 cut(s) | 507 |
| AjnI | CCWGG | 4 cut(s) | 74, 713, 794, 890 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 569, 601 |
| AluBI | AGCT | 4 cut(s) | 750, 804, 867, 918 |
| AluI | AGCT | 4 cut(s) | 750, 804, 867, 918 |
| Alw21I | GWGCWC | 1 cut(s) | 752 |
| AlwI | GGATC | 2 cut(s) | 953, 972 |
| Ama87I | CYCGRG | 1 cut(s) | 490 |
| AoxI | GGCC | 4 cut(s) | 80, 452, 768, 791 |
| ApaI | GGGCCC | 1 cut(s) | 456 |
| ApeKI | GCWGC | 6 cut(s) | 168, 207, 364, 370, 462, 939 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 390, 422 |
| AsiGI | ACCGGT | 1 cut(s) | 229 |
| AspLEI | GCGC | 4 cut(s) | 58, 108, 270, 308 |
| AspS9I | GGNCC | 8 cut(s) | 51, 123, 227, 386, 452, 453, 768, 792 |
| AsuC2I | CCSGG | 5 cut(s) | 11, 96, 351, 450, 754 |
| AsuHPI | GGTGA | 4 cut(s) | 211, 438, 586, 963 |
| AvaI | CYCGRG | 1 cut(s) | 490 |
| AvaII | GGWCC | 4 cut(s) | 51, 123, 227, 386 |
| BaeGI | GKGCMC | 2 cut(s) | 456, 686 |
| BanI | GGYRCC | 1 cut(s) | 887 |
| BanII | GRGCYC | 3 cut(s) | 148, 456, 752 |
| Bbv12I | GWGCWC | 1 cut(s) | 752 |
| BbvI | GCAGC | 6 cut(s) | 155, 194, 351, 357, 474, 926 |
| BceAI | ACGGC | 4 cut(s) | 11, 131, 327, 389 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 826, 860 |
| BciT130I | CCWGG | 4 cut(s) | 76, 715, 796, 892 |
| BcnI | CCSGG | 5 cut(s) | 11, 96, 351, 450, 754 |
| BfmI | CTRYAG | 2 cut(s) | 512, 772 |
| BfoI | RGCGCY | 1 cut(s) | 271 |
| Bme1390I | CCNGG | 9 cut(s) | 11, 76, 96, 351, 450, 715, 754, 796, 892 |
| Bme18I | GGWCC | 4 cut(s) | 51, 123, 227, 386 |
| BmeT110I | CYCGRG | 1 cut(s) | 490 |
| BmgBI | CACGTC | 1 cut(s) | 507 |
| BmgT120I | GGNCC | 8 cut(s) | 51, 123, 227, 386, 452, 453, 768, 792 |
| BmrFI | CCNGG | 9 cut(s) | 11, 76, 96, 351, 450, 715, 754, 796, 892 |
| BmsI | GCATC | 1 cut(s) | 834 |
| BoxI | GACNNNNGTC | 1 cut(s) | 649 |
| BpmI | CTGGAG | 4 cut(s) | 97, 395, 913, 940 |
| Bpu10I | CCTNAGC | 1 cut(s) | 959 |
| BpuMI | CCSGG | 5 cut(s) | 11, 96, 351, 450, 754 |
| BsaHI | GRCGYC | 1 cut(s) | 721 |
| BsaJI | CCNNGG | 7 cut(s) | 161, 350, 449, 491, 734, 794, 858 |
| BsaWI | WCCGGW | 1 cut(s) | 229 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 70, 100, 574, 604 |
| Bse118I | RCCGGY | 3 cut(s) | 229, 270, 619 |
| Bse3DI | GCAATG | 1 cut(s) | 53 |
| BseBI | CCWGG | 4 cut(s) | 76, 715, 796, 892 |
| BseDI | CCNNGG | 7 cut(s) | 161, 350, 449, 491, 734, 794, 858 |
| BseMI | GCAATG | 1 cut(s) | 53 |
| BseMII | CTCAG | 1 cut(s) | 133 |
| BseSI | GKGCMC | 2 cut(s) | 456, 686 |
| BseXI | GCAGC | 6 cut(s) | 155, 194, 351, 357, 474, 926 |
| BseYI | CCCAGC | 1 cut(s) | 609 |
| Bsh1236I | CGCG | 4 cut(s) | 56, 284, 384, 458 |
| Bsh1285I | CGRYCG | 2 cut(s) | 350, 643 |
| BshFI | GGCC | 4 cut(s) | 82, 454, 770, 793 |
| BshNI | GGYRCC | 1 cut(s) | 887 |
| BshTI | ACCGGT | 1 cut(s) | 229 |
| BsiEI | CGRYCG | 2 cut(s) | 350, 643 |
| BsiHKAI | GWGCWC | 1 cut(s) | 752 |
| BsiHKCI | CYCGRG | 1 cut(s) | 490 |
| BsiSI | CCGG | 8 cut(s) | 10, 95, 230, 271, 350, 449, 620, 753 |
| BslFI | GGGAC | 3 cut(s) | 240, 793, 918 |
| BsmFI | GGGAC | 3 cut(s) | 240, 793, 918 |
| BsnI | GGCC | 4 cut(s) | 82, 454, 770, 793 |
| BsoBI | CYCGRG | 1 cut(s) | 490 |
| Bsp120I | GGGCCC | 1 cut(s) | 452 |
| Bsp1286I | GDGCHC | 4 cut(s) | 148, 456, 686, 752 |
| Bsp143I | GATC | 2 cut(s) | 945, 977 |
| BspANI | GGCC | 4 cut(s) | 82, 454, 770, 793 |
| BspCNI | CTCAG | 1 cut(s) | 134 |
| BspFNI | CGCG | 4 cut(s) | 56, 284, 384, 458 |
| BspHI | TCATGA | 1 cut(s) | 702 |
| BspPI | GGATC | 2 cut(s) | 953, 972 |
| BspT107I | GGYRCC | 1 cut(s) | 887 |
| BsrBI | CCGCTC | 5 cut(s) | 530, 606, 744, 885, 906 |
| BsrDI | GCAATG | 1 cut(s) | 53 |
| BsrFI | RCCGGY | 3 cut(s) | 229, 270, 619 |
| BssAI | RCCGGY | 3 cut(s) | 229, 270, 619 |
| BssECI | CCNNGG | 7 cut(s) | 161, 350, 449, 491, 734, 794, 858 |
| BssMI | GATC | 2 cut(s) | 945, 977 |
| BssNI | GRCGYC | 1 cut(s) | 721 |
| BssT1I | CCWWGG | 1 cut(s) | 734 |
| Bst2UI | CCWGG | 4 cut(s) | 76, 715, 796, 892 |
| Bst4CI | ACNGT | 1 cut(s) | 841 |
| Bst6I | CTCTTC | 2 cut(s) | 422, 428 |
| BstACI | GRCGYC | 1 cut(s) | 721 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 364 |
| BstDEI | CTNAG | 2 cut(s) | 142, 959 |
| BstDSI | CCRYGG | 2 cut(s) | 161, 858 |
| BstEII | GGTNACC | 2 cut(s) | 444, 951 |
| BstFNI | CGCG | 4 cut(s) | 56, 284, 384, 458 |
| BstH2I | RGCGCY | 1 cut(s) | 271 |
| BstHHI | GCGC | 4 cut(s) | 58, 108, 270, 308 |
| BstKTI | GATC | 2 cut(s) | 948, 980 |
| BstMBI | GATC | 2 cut(s) | 945, 977 |
| BstMCI | CGRYCG | 2 cut(s) | 350, 643 |
| BstNI | CCWGG | 4 cut(s) | 76, 715, 796, 892 |
| BstNSI | RCATGY | 1 cut(s) | 933 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 649 |
| BstPI | GGTNACC | 2 cut(s) | 444, 951 |
| BstSCI | CCNGG | 9 cut(s) | 9, 74, 94, 349, 448, 713, 752, 794, 890 |
| BstSFI | CTRYAG | 2 cut(s) | 512, 772 |
| BstSLI | GKGCMC | 2 cut(s) | 456, 686 |
| BstUI | CGCG | 4 cut(s) | 56, 284, 384, 458 |
| BstV1I | GCAGC | 6 cut(s) | 155, 194, 351, 357, 474, 926 |
| BstX2I | RGATCY | 1 cut(s) | 977 |
| BstYI | RGATCY | 1 cut(s) | 977 |
| BsuRI | GGCC | 4 cut(s) | 82, 454, 770, 793 |
| BtgI | CCRYGG | 2 cut(s) | 161, 858 |
| BtrI | CACGTC | 1 cut(s) | 507 |
| BtsI | GCAGTG | 1 cut(s) | 254 |
| BtsIMutI | CAGTG | 2 cut(s) | 139, 254 |
| CciI | TCATGA | 1 cut(s) | 702 |
| CfoI | GCGC | 4 cut(s) | 58, 108, 270, 308 |
| Cfr10I | RCCGGY | 3 cut(s) | 229, 270, 619 |
| Cfr13I | GGNCC | 8 cut(s) | 51, 123, 227, 386, 452, 453, 768, 792 |
| CseI | GACGC | 3 cut(s) | 290, 710, 830 |
| Csp6I | GTAC | 3 cut(s) | 277, 380, 524 |
| CspAI | ACCGGT | 1 cut(s) | 229 |
| CviAII | CATG | 3 cut(s) | 84, 703, 930 |
| CviQI | GTAC | 3 cut(s) | 277, 380, 524 |
| DdeI | CTNAG | 2 cut(s) | 142, 959 |
| DpnI | GATC | 2 cut(s) | 947, 979 |
| DpnII | GATC | 2 cut(s) | 945, 977 |
| Eam1104I | CTCTTC | 2 cut(s) | 422, 428 |
| EarI | CTCTTC | 2 cut(s) | 422, 428 |
| EciI | GGCGGA | 1 cut(s) | 476 |
| Ecl136II | GAGCTC | 1 cut(s) | 750 |
| Eco130I | CCWWGG | 1 cut(s) | 734 |
| Eco24I | GRGCYC | 3 cut(s) | 148, 456, 752 |
| Eco47I | GGWCC | 4 cut(s) | 51, 123, 227, 386 |
| Eco53kI | GAGCTC | 1 cut(s) | 750 |
| Eco57I | CTGAAG | 2 cut(s) | 376, 967 |
| Eco88I | CYCGRG | 1 cut(s) | 490 |
| Eco91I | GGTNACC | 2 cut(s) | 444, 951 |
| EcoICRI | GAGCTC | 1 cut(s) | 750 |
| EcoO109I | RGGNCCY | 1 cut(s) | 452 |
| EcoO65I | GGTNACC | 2 cut(s) | 444, 951 |
| EcoRII | CCWGG | 4 cut(s) | 74, 713, 794, 890 |
| EcoT14I | CCWWGG | 1 cut(s) | 734 |
| EcoT38I | GRGCYC | 3 cut(s) | 148, 456, 752 |
| ErhI | CCWWGG | 1 cut(s) | 734 |
| FaeI | CATG | 3 cut(s) | 87, 706, 933 |
| FaiI | YATR | 6 cut(s) | 85, 89, 328, 554, 704, 931 |
| FaqI | GGGAC | 3 cut(s) | 240, 793, 918 |
| FatI | CATG | 3 cut(s) | 83, 702, 929 |
| FauI | CCCGC | 8 cut(s) | 216, 219, 277, 463, 507, 737, 759, 935 |
| FblI | GTMKAC | 2 cut(s) | 346, 643 |
| FriOI | GRGCYC | 3 cut(s) | 148, 456, 752 |
| GlaI | GCGC | 4 cut(s) | 57, 107, 269, 307 |
| GsaI | CCCAGC | 1 cut(s) | 613 |
| GsuI | CTGGAG | 4 cut(s) | 97, 395, 913, 940 |
| HaeII | RGCGCY | 1 cut(s) | 271 |
| HaeIII | GGCC | 4 cut(s) | 82, 454, 770, 793 |
| HapII | CCGG | 8 cut(s) | 10, 95, 230, 271, 350, 449, 620, 753 |
| HgaI | GACGC | 3 cut(s) | 290, 710, 830 |
| HhaI | GCGC | 4 cut(s) | 58, 108, 270, 308 |
| Hin1I | GRCGYC | 1 cut(s) | 721 |
| Hin1II | CATG | 3 cut(s) | 87, 706, 933 |
| Hin6I | GCGC | 4 cut(s) | 56, 106, 268, 306 |
| HinP1I | GCGC | 4 cut(s) | 56, 106, 268, 306 |
| HincII | GTYRAC | 3 cut(s) | 347, 409, 644 |
| HindII | GTYRAC | 3 cut(s) | 347, 409, 644 |
| HinfI | GANTC | 3 cut(s) | 3, 538, 658 |
| HpaII | CCGG | 8 cut(s) | 10, 95, 230, 271, 350, 449, 620, 753 |
| HphI | GGTGA | 4 cut(s) | 211, 438, 586, 963 |
| Hpy166II | GTNNAC | 4 cut(s) | 123, 347, 409, 644 |
| Hpy188I | TCNGA | 1 cut(s) | 153 |
| Hpy188III | TCNNGA | 2 cut(s) | 39, 703 |
| Hpy8I | GTNNAC | 4 cut(s) | 123, 347, 409, 644 |
| Hpy99I | CGWCG | 4 cut(s) | 284, 348, 574, 824 |
| HpyAV | CCTTC | 3 cut(s) | 252, 400, 783 |
| HpyCH4III | ACNGT | 1 cut(s) | 841 |
| HpyCH4IV | ACGT | 3 cut(s) | 506, 686, 872 |
| HpyCH4V | TGCA | 1 cut(s) | 358 |
| HpyF3I | CTNAG | 2 cut(s) | 142, 959 |
| HpySE526I | ACGT | 3 cut(s) | 506, 686, 872 |
| Hsp92I | GRCGYC | 1 cut(s) | 721 |
| Hsp92II | CATG | 3 cut(s) | 87, 706, 933 |
| HspAI | GCGC | 4 cut(s) | 56, 106, 268, 306 |
| KroI | GCCGGC | 2 cut(s) | 270, 619 |
| KroNI | GCCGGC | 2 cut(s) | 272, 621 |
| Kzo9I | GATC | 2 cut(s) | 945, 977 |
| LmnI | GCTCC | 8 cut(s) | 162, 339, 489, 501, 747, 755, 894, 921 |
| Lsp1109I | GCAGC | 6 cut(s) | 155, 194, 351, 357, 474, 926 |
| LweI | GCATC | 1 cut(s) | 834 |
| MaeII | ACGT | 3 cut(s) | 506, 686, 872 |
| MaeIII | GTNAC | 5 cut(s) | 28, 199, 321, 444, 951 |
| MalI | GATC | 2 cut(s) | 947, 979 |
| MbiI | CCGCTC | 5 cut(s) | 530, 606, 744, 885, 906 |
| MboI | GATC | 2 cut(s) | 945, 977 |
| MboII | GAAGA | 6 cut(s) | 306, 439, 445, 480, 769, 978 |
| MflI | RGATCY | 1 cut(s) | 977 |
| MhlI | GDGCHC | 4 cut(s) | 148, 456, 686, 752 |
| MlyI | GAGTC | 1 cut(s) | 532 |
| MmeI | TCCRAC | 1 cut(s) | 317 |
| MreI | CGCCGGCG | 1 cut(s) | 270 |
| MroNI | GCCGGC | 2 cut(s) | 270, 619 |
| MslI | CAYNNNNRTG | 1 cut(s) | 194 |
| MspA1I | CMGCKG | 4 cut(s) | 214, 370, 502, 517 |
| MspI | CCGG | 8 cut(s) | 10, 95, 230, 271, 350, 449, 620, 753 |
| MspR9I | CCNGG | 9 cut(s) | 11, 76, 96, 351, 450, 715, 754, 796, 892 |
| MvaI | CCWGG | 4 cut(s) | 76, 715, 796, 892 |
| MvnI | CGCG | 4 cut(s) | 56, 284, 384, 458 |
| NaeI | GCCGGC | 2 cut(s) | 272, 621 |
| NciI | CCSGG | 5 cut(s) | 11, 96, 351, 450, 754 |
| NdeII | GATC | 2 cut(s) | 945, 977 |
| NgoMIV | GCCGGC | 2 cut(s) | 270, 619 |
| NlaIII | CATG | 3 cut(s) | 87, 706, 933 |
| NmeAIII | GCCGAG | 1 cut(s) | 582 |
| NmuCI | GTSAC | 3 cut(s) | 199, 444, 951 |
| NspI | RCATGY | 1 cut(s) | 933 |
| PagI | TCATGA | 1 cut(s) | 702 |
| PciI | ACATGT | 1 cut(s) | 929 |
| PdiI | GCCGGC | 2 cut(s) | 272, 621 |
| PfeI | GAWTC | 1 cut(s) | 658 |
| PfoI | TCCNGGA | 2 cut(s) | 74, 752 |
| PinAI | ACCGGT | 1 cut(s) | 229 |
| PleI | GAGTC | 1 cut(s) | 532 |
| PpsI | GAGTC | 1 cut(s) | 532 |
| PscI | ACATGT | 1 cut(s) | 929 |
| PshAI | GACNNNNGTC | 1 cut(s) | 649 |
| Psp124BI | GAGCTC | 1 cut(s) | 752 |
| Psp1406I | AACGTT | 1 cut(s) | 872 |
| Psp6I | CCWGG | 4 cut(s) | 74, 713, 794, 890 |
| PspEI | GGTNACC | 2 cut(s) | 444, 951 |
| PspFI | CCCAGC | 1 cut(s) | 609 |
| PspGI | CCWGG | 4 cut(s) | 74, 713, 794, 890 |
| PspOMI | GGGCCC | 1 cut(s) | 452 |
| PspPI | GGNCC | 8 cut(s) | 51, 123, 227, 386, 452, 453, 768, 792 |
| PsuI | RGATCY | 1 cut(s) | 977 |
| RsaI | GTAC | 3 cut(s) | 278, 381, 525 |
| RsaNI | GTAC | 3 cut(s) | 277, 380, 524 |
| RseI | CAYNNNNRTG | 1 cut(s) | 194 |
| SacI | GAGCTC | 1 cut(s) | 752 |
| SalI | GTCGAC | 2 cut(s) | 345, 642 |
| Sau3AI | GATC | 2 cut(s) | 945, 977 |
| Sau96I | GGNCC | 8 cut(s) | 51, 123, 227, 386, 452, 453, 768, 792 |
| SchI | GAGTC | 1 cut(s) | 532 |
| ScrFI | CCNGG | 9 cut(s) | 11, 76, 96, 351, 450, 715, 754, 796, 892 |
| SduI | GDGCHC | 4 cut(s) | 148, 456, 686, 752 |
| SfaNI | GCATC | 1 cut(s) | 834 |
| SfcI | CTRYAG | 2 cut(s) | 512, 772 |
| SgrAI | CRCCGGYG | 1 cut(s) | 270 |
| SinI | GGWCC | 4 cut(s) | 51, 123, 227, 386 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 194 |
| SstI | GAGCTC | 1 cut(s) | 752 |
| StyD4I | CCNGG | 9 cut(s) | 9, 74, 94, 349, 448, 713, 752, 794, 890 |
| StyI | CCWWGG | 1 cut(s) | 734 |
| TaaI | ACNGT | 1 cut(s) | 841 |
| TaiI | ACGT | 3 cut(s) | 509, 689, 875 |
| TaqI | TCGA | 4 cut(s) | 292, 346, 643, 815 |
| TaqII | GACCGA | 1 cut(s) | 629 |
| TfiI | GAWTC | 1 cut(s) | 658 |
| TscAI | CASTG | 2 cut(s) | 146, 254 |
| TseFI | GTSAC | 3 cut(s) | 199, 444, 951 |
| TseI | GCWGC | 6 cut(s) | 168, 207, 364, 370, 462, 939 |
| Tsp45I | GTSAC | 3 cut(s) | 199, 444, 951 |
| TspDTI | ATGAA | 2 cut(s) | 590, 691 |
| TspGWI | ACGGA | 2 cut(s) | 328, 639 |
| TspRI | CASTG | 2 cut(s) | 146, 254 |
| VpaK11BI | GGWCC | 4 cut(s) | 51, 123, 227, 386 |
| XceI | RCATGY | 1 cut(s) | 933 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 190, 333, 732 |
| XmiI | GTMKAC | 2 cut(s) | 346, 643 |