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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1081 |
| AccB1I | GGYRCC | 1 cut(s) | 1186 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 300 |
| AccBSI | CCGCTC | 7 cut(s) | 510, 690, 937, 1249, 1276, 1489, 1618 |
| AccII | CGCG | 6 cut(s) | 203, 558, 1309, 1530, 1995, 2004 |
| AccIII | TCCGGA | 2 cut(s) | 94, 331 |
| AclI | AACGTT | 1 cut(s) | 447 |
| AclWI | GGATC | 4 cut(s) | 906, 1566, 1929, 1942 |
| AcoI | YGGCCR | 6 cut(s) | 759, 888, 918, 1545, 1677, 1740 |
| AcuI | CTGAAG | 4 cut(s) | 551, 731, 1321, 1858 |
| AcvI | CACGTG | 1 cut(s) | 122 |
| AcyI | GRCGYC | 4 cut(s) | 773, 1187, 1391, 1524 |
| AfaI | GTAC | 3 cut(s) | 91, 126, 694 |
| AfeI | AGCGCT | 3 cut(s) | 386, 566, 913 |
| AflIII | ACRYGT | 5 cut(s) | 119, 121, 189, 1576, 1881 |
| AgsI | TTSAA | 4 cut(s) | 1754, 1762, 1837, 2018 |
| AjiI | CACGTC | 3 cut(s) | 190, 1579, 1882 |
| AjnI | CCWGG | 2 cut(s) | 341, 1443 |
| AleI | CACNNNNGTG | 1 cut(s) | 846 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1238, 1270 |
| AluBI | AGCT | 9 cut(s) | 371, 662, 745, 1154, 1341, 1420, 1537, 1642, 1721 |
| AluI | AGCT | 9 cut(s) | 371, 662, 745, 1154, 1341, 1420, 1537, 1642, 1721 |
| Alw21I | GWGCWC | 2 cut(s) | 1422, 1733 |
| Alw26I | GTCTC | 6 cut(s) | 37, 103, 1089, 1445, 1465, 1585 |
| AlwI | GGATC | 4 cut(s) | 906, 1566, 1929, 1942 |
| Ama87I | CYCGRG | 3 cut(s) | 85, 1404, 1815 |
| Aor13HI | TCCGGA | 2 cut(s) | 94, 331 |
| Aor51HI | AGCGCT | 3 cut(s) | 386, 566, 913 |
| ApaI | GGGCCC | 2 cut(s) | 1129, 1816 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 943, 975 |
| AspS9I | GGNCC | 8 cut(s) | 923, 959, 1032, 1125, 1126, 1144, 1812, 1813 |
| AsuHPI | GGTGA | 6 cut(s) | 362, 751, 829, 835, 860, 1712 |
| AsuNHI | GCTAGC | 1 cut(s) | 146 |
| AvaI | CYCGRG | 3 cut(s) | 85, 1404, 1815 |
| AvaII | GGWCC | 2 cut(s) | 959, 1032 |
| BaeGI | GKGCMC | 2 cut(s) | 1129, 1816 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 684, 717 |
| BamHI | GGATCC | 1 cut(s) | 1934 |
| BanI | GGYRCC | 1 cut(s) | 1186 |
| BanII | GRGCYC | 3 cut(s) | 1129, 1422, 1816 |
| BbrPI | CACGTG | 1 cut(s) | 122 |
| BbsI | GAAGAC | 1 cut(s) | 1790 |
| Bbv12I | GWGCWC | 2 cut(s) | 1422, 1733 |
| BbvCI | CCTCAGC | 1 cut(s) | 1722 |
| BceAI | ACGGC | 6 cut(s) | 143, 774, 903, 1092, 1178, 1332 |
| BciT130I | CCWGG | 2 cut(s) | 343, 1445 |
| BcoDI | GTCTC | 6 cut(s) | 37, 103, 1089, 1445, 1465, 1585 |
| BfaI | CTAG | 4 cut(s) | 147, 272, 372, 1931 |
| BfmI | CTRYAG | 3 cut(s) | 58, 1610, 2007 |
| BfoI | RGCGCY | 4 cut(s) | 388, 568, 915, 1190 |
| BlpI | GCTNAGC | 2 cut(s) | 36, 197 |
| BmcAI | AGTACT | 1 cut(s) | 91 |
| Bme18I | GGWCC | 2 cut(s) | 959, 1032 |
| BmeT110I | CYCGRG | 3 cut(s) | 85, 1404, 1815 |
| BmgBI | CACGTC | 3 cut(s) | 190, 1579, 1882 |
| BmgT120I | GGNCC | 8 cut(s) | 923, 959, 1032, 1125, 1126, 1144, 1812, 1813 |
| BmsI | GCATC | 4 cut(s) | 816, 930, 1838, 1851 |
| BmtI | GCTAGC | 1 cut(s) | 150 |
| BpiI | GAAGAC | 1 cut(s) | 1790 |
| BpmI | CTGGAG | 3 cut(s) | 1079, 1427, 1583 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1722 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 36, 197 |
| BpuEI | CTTGAG | 1 cut(s) | 1406 |
| BsaAI | YACGTR | 1 cut(s) | 122 |
| BsaHI | GRCGYC | 4 cut(s) | 773, 1187, 1391, 1524 |
| BsaI | GGTCTC | 1 cut(s) | 1445 |
| BsaWI | WCCGGW | 3 cut(s) | 94, 331, 811 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 34, 64, 89, 119, 1095, 1125, 1238, 1268 |
| Bse118I | RCCGGY | 2 cut(s) | 979, 1895 |
| Bse1I | ACTGG | 4 cut(s) | 835, 1016, 1479, 1500 |
| BseAI | TCCGGA | 2 cut(s) | 94, 331 |
| BseBI | CCWGG | 2 cut(s) | 343, 1445 |
| BseMII | CTCAG | 7 cut(s) | 50, 211, 896, 1071, 1706, 1713, 1848 |
| BseNI | ACTGG | 4 cut(s) | 835, 1016, 1479, 1500 |
| BseRI | GAGGAG | 1 cut(s) | 686 |
| BseSI | GKGCMC | 2 cut(s) | 1129, 1816 |
| BseX3I | CGGCCG | 4 cut(s) | 759, 888, 918, 1740 |
| BseYI | CCCAGC | 6 cut(s) | 130, 419, 599, 1040, 1279, 1693 |
| BsgI | GTGCAG | 2 cut(s) | 890, 1673 |
| Bsh1236I | CGCG | 6 cut(s) | 203, 558, 1309, 1530, 1995, 2004 |
| Bsh1285I | CGRYCG | 4 cut(s) | 762, 891, 921, 1743 |
| BshNI | GGYRCC | 1 cut(s) | 1186 |
| BsiEI | CGRYCG | 4 cut(s) | 762, 891, 921, 1743 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1422, 1733 |
| BsiHKCI | CYCGRG | 3 cut(s) | 85, 1404, 1815 |
| BslFI | GGGAC | 4 cut(s) | 490, 670, 892, 1506 |
| BsmAI | GTCTC | 6 cut(s) | 37, 103, 1089, 1445, 1465, 1585 |
| BsmBI | CGTCTC | 1 cut(s) | 1585 |
| BsmFI | GGGAC | 4 cut(s) | 490, 670, 892, 1506 |
| BsmI | GAATGC | 1 cut(s) | 1757 |
| Bso31I | GGTCTC | 1 cut(s) | 1445 |
| BsoBI | CYCGRG | 3 cut(s) | 85, 1404, 1815 |
| Bsp120I | GGGCCC | 2 cut(s) | 1125, 1812 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1129, 1422, 1733, 1816 |
| Bsp13I | TCCGGA | 2 cut(s) | 94, 331 |
| Bsp143I | GATC | 6 cut(s) | 898, 1201, 1482, 1558, 1599, 1934 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 36, 197 |
| BspCNI | CTCAG | 7 cut(s) | 49, 210, 895, 1072, 1707, 1714, 1849 |
| BspEI | TCCGGA | 2 cut(s) | 94, 331 |
| BspFNI | CGCG | 6 cut(s) | 203, 558, 1309, 1530, 1995, 2004 |
| BspHI | TCATGA | 1 cut(s) | 1233 |
| BspMAI | CTGCAG | 1 cut(s) | 1614 |
| BspOI | GCTAGC | 1 cut(s) | 150 |
| BspPI | GGATC | 4 cut(s) | 906, 1566, 1929, 1942 |
| BspQI | GCTCTTC | 1 cut(s) | 1410 |
| BspT107I | GGYRCC | 1 cut(s) | 1186 |
| BspTNI | GGTCTC | 1 cut(s) | 1445 |
| BsrBI | CCGCTC | 7 cut(s) | 510, 690, 937, 1249, 1276, 1489, 1618 |
| BsrFI | RCCGGY | 2 cut(s) | 979, 1895 |
| BsrI | ACTGG | 4 cut(s) | 835, 1016, 1479, 1500 |
| BssAI | RCCGGY | 2 cut(s) | 979, 1895 |
| BssMI | GATC | 6 cut(s) | 898, 1201, 1482, 1558, 1599, 1934 |
| BssNI | GRCGYC | 4 cut(s) | 773, 1187, 1391, 1524 |
| BssT1I | CCWWGG | 2 cut(s) | 844, 1464 |
| Bst2UI | CCWGG | 2 cut(s) | 343, 1445 |
| Bst4CI | ACNGT | 5 cut(s) | 59, 484, 868, 1975, 2011 |
| Bst6I | CTCTTC | 4 cut(s) | 1092, 1265, 1410, 1927 |
| BstACI | GRCGYC | 4 cut(s) | 773, 1187, 1391, 1524 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1166 |
| BstBAI | YACGTR | 1 cut(s) | 122 |
| BstDEI | CTNAG | 7 cut(s) | 36, 197, 882, 1080, 1715, 1722, 1857 |
| BstDSI | CCRYGG | 1 cut(s) | 1528 |
| BstEII | GGTNACC | 1 cut(s) | 1705 |
| BstFNI | CGCG | 6 cut(s) | 203, 558, 1309, 1530, 1995, 2004 |
| BstH2I | RGCGCY | 4 cut(s) | 388, 568, 915, 1190 |
| BstKTI | GATC | 6 cut(s) | 901, 1204, 1485, 1561, 1602, 1937 |
| BstMAI | GTCTC | 6 cut(s) | 37, 103, 1089, 1445, 1465, 1585 |
| BstMBI | GATC | 6 cut(s) | 898, 1201, 1482, 1558, 1599, 1934 |
| BstMCI | CGRYCG | 4 cut(s) | 762, 891, 921, 1743 |
| BstNI | CCWGG | 2 cut(s) | 343, 1445 |
| BstPI | GGTNACC | 1 cut(s) | 1705 |
| BstSFI | CTRYAG | 3 cut(s) | 58, 1610, 2007 |
| BstSLI | GKGCMC | 2 cut(s) | 1129, 1816 |
| BstUI | CGCG | 6 cut(s) | 203, 558, 1309, 1530, 1995, 2004 |
| BstV2I | GAAGAC | 1 cut(s) | 1790 |
| BstX2I | RGATCY | 2 cut(s) | 1558, 1934 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 956 |
| BstYI | RGATCY | 2 cut(s) | 1558, 1934 |
| BstZI | CGGCCG | 4 cut(s) | 759, 888, 918, 1740 |
| BtgI | CCRYGG | 1 cut(s) | 1528 |
| BtrI | CACGTC | 3 cut(s) | 190, 1579, 1882 |
| BtsI | GCAGTG | 2 cut(s) | 175, 257 |
| BtsIMutI | CAGTG | 4 cut(s) | 175, 257, 1023, 1971 |
| CciI | TCATGA | 1 cut(s) | 1233 |
| CciNI | GCGGCCGC | 1 cut(s) | 1740 |
| Cfr10I | RCCGGY | 2 cut(s) | 979, 1895 |
| Cfr13I | GGNCC | 8 cut(s) | 923, 959, 1032, 1125, 1126, 1144, 1812, 1813 |
| Cfr42I | CCGCGG | 1 cut(s) | 1531 |
| Cfr9I | CCCGGG | 2 cut(s) | 1404, 1815 |
| CseI | GACGC | 6 cut(s) | 221, 317, 762, 1380, 1532, 1795 |
| Csp6I | GTAC | 3 cut(s) | 90, 125, 693 |
| CviAII | CATG | 3 cut(s) | 245, 1234, 1986 |
| CviQI | GTAC | 3 cut(s) | 90, 125, 693 |
| DdeI | CTNAG | 7 cut(s) | 36, 197, 882, 1080, 1715, 1722, 1857 |
| DinI | GGCGCC | 1 cut(s) | 1188 |
| DpnI | GATC | 6 cut(s) | 900, 1203, 1484, 1560, 1601, 1936 |
| DpnII | GATC | 6 cut(s) | 898, 1201, 1482, 1558, 1599, 1934 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1081 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1081 |
| EaeI | YGGCCR | 6 cut(s) | 759, 888, 918, 1545, 1677, 1740 |
| EagI | CGGCCG | 4 cut(s) | 759, 888, 918, 1740 |
| Eam1104I | CTCTTC | 4 cut(s) | 1092, 1265, 1410, 1927 |
| EarI | CTCTTC | 4 cut(s) | 1092, 1265, 1410, 1927 |
| EciI | GGCGGA | 7 cut(s) | 221, 998, 1472, 1493, 1520, 1654, 1787 |
| Ecl136II | GAGCTC | 1 cut(s) | 1420 |
| EclXI | CGGCCG | 4 cut(s) | 759, 888, 918, 1740 |
| Eco130I | CCWWGG | 2 cut(s) | 844, 1464 |
| Eco24I | GRGCYC | 3 cut(s) | 1129, 1422, 1816 |
| Eco31I | GGTCTC | 1 cut(s) | 1445 |
| Eco47I | GGWCC | 2 cut(s) | 959, 1032 |
| Eco47III | AGCGCT | 3 cut(s) | 386, 566, 913 |
| Eco52I | CGGCCG | 4 cut(s) | 759, 888, 918, 1740 |
| Eco53kI | GAGCTC | 1 cut(s) | 1420 |
| Eco57I | CTGAAG | 4 cut(s) | 551, 731, 1321, 1858 |
| Eco72I | CACGTG | 1 cut(s) | 122 |
| Eco88I | CYCGRG | 3 cut(s) | 85, 1404, 1815 |
| Eco91I | GGTNACC | 1 cut(s) | 1705 |
| EcoICRI | GAGCTC | 1 cut(s) | 1420 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1125, 1812 |
| EcoO65I | GGTNACC | 1 cut(s) | 1705 |
| EcoRII | CCWGG | 2 cut(s) | 341, 1443 |
| EcoT14I | CCWWGG | 2 cut(s) | 844, 1464 |
| EcoT38I | GRGCYC | 3 cut(s) | 1129, 1422, 1816 |
| EgeI | GGCGCC | 1 cut(s) | 1188 |
| EheI | GGCGCC | 1 cut(s) | 1188 |
| ErhI | CCWWGG | 2 cut(s) | 844, 1464 |
| Esp3I | CGTCTC | 1 cut(s) | 1585 |
| FaeI | CATG | 3 cut(s) | 248, 1237, 1989 |
| FaqI | GGGAC | 4 cut(s) | 490, 670, 892, 1506 |
| FatI | CATG | 3 cut(s) | 244, 1233, 1985 |
| FriOI | GRGCYC | 3 cut(s) | 1129, 1422, 1816 |
| FspBI | CTAG | 4 cut(s) | 147, 272, 372, 1931 |
| GsaI | CCCAGC | 6 cut(s) | 134, 423, 603, 1044, 1283, 1697 |
| GsuI | CTGGAG | 3 cut(s) | 1079, 1427, 1583 |
| HaeII | RGCGCY | 4 cut(s) | 388, 568, 915, 1190 |
| HgaI | GACGC | 6 cut(s) | 221, 317, 762, 1380, 1532, 1795 |
| Hin1I | GRCGYC | 4 cut(s) | 773, 1187, 1391, 1524 |
| Hin1II | CATG | 3 cut(s) | 248, 1237, 1989 |
| HincII | GTYRAC | 4 cut(s) | 487, 667, 1893, 1999 |
| HindII | GTYRAC | 4 cut(s) | 487, 667, 1893, 1999 |
| HindIII | AAGCTT | 1 cut(s) | 1535 |
| HinfI | GANTC | 8 cut(s) | 176, 224, 452, 778, 880, 1082, 1208, 1661 |
| HphI | GGTGA | 6 cut(s) | 362, 751, 829, 835, 860, 1712 |
| Hpy166II | GTNNAC | 5 cut(s) | 125, 487, 667, 1893, 1999 |
| Hpy188I | TCNGA | 6 cut(s) | 187, 805, 885, 903, 1436, 1858 |
| Hpy188III | TCNNGA | 8 cut(s) | 95, 332, 784, 1088, 1205, 1234, 1562, 1978 |
| Hpy8I | GTNNAC | 5 cut(s) | 125, 487, 667, 1893, 1999 |
| Hpy99I | CGWCG | 7 cut(s) | 563, 760, 778, 790, 1030, 1318, 1883 |
| HpyCH4III | ACNGT | 5 cut(s) | 59, 484, 868, 1975, 2011 |
| HpyCH4IV | ACGT | 6 cut(s) | 121, 189, 447, 719, 1578, 1881 |
| HpyCH4V | TGCA | 7 cut(s) | 248, 871, 1160, 1372, 1612, 1654, 1864 |
| HpyF3I | CTNAG | 7 cut(s) | 36, 197, 882, 1080, 1715, 1722, 1857 |
| HpySE526I | ACGT | 6 cut(s) | 121, 189, 447, 719, 1578, 1881 |
| Hsp92I | GRCGYC | 4 cut(s) | 773, 1187, 1391, 1524 |
| Hsp92II | CATG | 3 cut(s) | 248, 1237, 1989 |
| KasI | GGCGCC | 1 cut(s) | 1186 |
| Kpn2I | TCCGGA | 2 cut(s) | 94, 331 |
| KspI | CCGCGG | 1 cut(s) | 1531 |
| Kzo9I | GATC | 6 cut(s) | 898, 1201, 1482, 1558, 1599, 1934 |
| LguI | GCTCTTC | 1 cut(s) | 1410 |
| LweI | GCATC | 4 cut(s) | 816, 930, 1838, 1851 |
| MaeI | CTAG | 4 cut(s) | 147, 272, 372, 1931 |
| MaeII | ACGT | 6 cut(s) | 121, 189, 447, 719, 1578, 1881 |
| MaeIII | GTNAC | 8 cut(s) | 53, 68, 77, 307, 377, 700, 997, 1705 |
| MalI | GATC | 6 cut(s) | 900, 1203, 1484, 1560, 1601, 1936 |
| MbiI | CCGCTC | 7 cut(s) | 510, 690, 937, 1249, 1276, 1489, 1618 |
| MboI | GATC | 6 cut(s) | 898, 1201, 1482, 1558, 1599, 1934 |
| MboII | GAAGA | 9 cut(s) | 440, 620, 863, 1109, 1150, 1252, 1427, 1795, 1914 |
| MfeI | CAATTG | 2 cut(s) | 1320, 1328 |
| MflI | RGATCY | 2 cut(s) | 1558, 1934 |
| MhlI | GDGCHC | 4 cut(s) | 1129, 1422, 1733, 1816 |
| MluCI | AATT | 2 cut(s) | 1320, 1328 |
| Mly113I | GGCGCC | 1 cut(s) | 1187 |
| MlyI | GAGTC | 5 cut(s) | 461, 874, 1091, 1202, 1670 |
| MmeI | TCCRAC | 1 cut(s) | 1569 |
| MroI | TCCGGA | 2 cut(s) | 94, 331 |
| MseI | TTAA | 2 cut(s) | 1539, 1779 |
| MslI | CAYNNNNRTG | 2 cut(s) | 846, 1649 |
| MunI | CAATTG | 2 cut(s) | 1320, 1328 |
| Mva1269I | GAATGC | 1 cut(s) | 1757 |
| MvaI | CCWGG | 2 cut(s) | 343, 1445 |
| MvnI | CGCG | 6 cut(s) | 203, 558, 1309, 1530, 1995, 2004 |
| NarI | GGCGCC | 1 cut(s) | 1187 |
| NdeII | GATC | 6 cut(s) | 898, 1201, 1482, 1558, 1599, 1934 |
| NheI | GCTAGC | 1 cut(s) | 146 |
| NlaIII | CATG | 3 cut(s) | 248, 1237, 1989 |
| NmeAIII | GCCGAG | 2 cut(s) | 1243, 1322 |
| NmuCI | GTSAC | 3 cut(s) | 377, 700, 997 |
| NotI | GCGGCCGC | 1 cut(s) | 1740 |
| OliI | CACNNNNGTG | 1 cut(s) | 846 |
| PaeR7I | CTCGAG | 1 cut(s) | 85 |
| PagI | TCATGA | 1 cut(s) | 1233 |
| PciSI | GCTCTTC | 1 cut(s) | 1410 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 233, 325, 782, 1380 |
| PctI | GAATGC | 1 cut(s) | 1757 |
| PfeI | GAWTC | 3 cut(s) | 176, 224, 778 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 300 |
| PfoI | TCCNGGA | 1 cut(s) | 468 |
| PleI | GAGTC | 5 cut(s) | 460, 874, 1090, 1202, 1669 |
| PluTI | GGCGCC | 1 cut(s) | 1190 |
| PmaCI | CACGTG | 1 cut(s) | 122 |
| PmlI | CACGTG | 1 cut(s) | 122 |
| PpsI | GAGTC | 5 cut(s) | 460, 874, 1090, 1202, 1669 |
| Ppu21I | YACGTR | 1 cut(s) | 122 |
| Psp124BI | GAGCTC | 1 cut(s) | 1422 |
| Psp1406I | AACGTT | 1 cut(s) | 447 |
| Psp6I | CCWGG | 2 cut(s) | 341, 1443 |
| PspCI | CACGTG | 1 cut(s) | 122 |
| PspEI | GGTNACC | 1 cut(s) | 1705 |
| PspFI | CCCAGC | 6 cut(s) | 130, 419, 599, 1040, 1279, 1693 |
| PspGI | CCWGG | 2 cut(s) | 341, 1443 |
| PspOMI | GGGCCC | 2 cut(s) | 1125, 1812 |
| PspPI | GGNCC | 8 cut(s) | 923, 959, 1032, 1125, 1126, 1144, 1812, 1813 |
| PspXI | VCTCGAGB | 1 cut(s) | 85 |
| PstI | CTGCAG | 1 cut(s) | 1614 |
| PsuI | RGATCY | 2 cut(s) | 1558, 1934 |
| PvuII | CAGCTG | 1 cut(s) | 662 |
| RsaI | GTAC | 3 cut(s) | 91, 126, 694 |
| RsaNI | GTAC | 3 cut(s) | 90, 125, 693 |
| RseI | CAYNNNNRTG | 2 cut(s) | 846, 1649 |
| SacI | GAGCTC | 1 cut(s) | 1422 |
| SacII | CCGCGG | 1 cut(s) | 1531 |
| SapI | GCTCTTC | 1 cut(s) | 1410 |
| SaqAI | TTAA | 2 cut(s) | 1539, 1779 |
| Sau3AI | GATC | 6 cut(s) | 898, 1201, 1482, 1558, 1599, 1934 |
| Sau96I | GGNCC | 8 cut(s) | 923, 959, 1032, 1125, 1126, 1144, 1812, 1813 |
| ScaI | AGTACT | 1 cut(s) | 91 |
| SchI | GAGTC | 5 cut(s) | 461, 874, 1091, 1202, 1670 |
| SduI | GDGCHC | 4 cut(s) | 1129, 1422, 1733, 1816 |
| SfaNI | GCATC | 4 cut(s) | 816, 930, 1838, 1851 |
| SfcI | CTRYAG | 3 cut(s) | 58, 1610, 2007 |
| SfoI | GGCGCC | 1 cut(s) | 1188 |
| Sfr274I | CTCGAG | 1 cut(s) | 85 |
| Sfr303I | CCGCGG | 1 cut(s) | 1531 |
| SgrAI | CRCCGGYG | 1 cut(s) | 979 |
| SgrBI | CCGCGG | 1 cut(s) | 1531 |
| SinI | GGWCC | 2 cut(s) | 959, 1032 |
| SlaI | CTCGAG | 1 cut(s) | 85 |
| SmaI | CCCGGG | 2 cut(s) | 1406, 1817 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 846, 1649 |
| SmlI | CTYRAG | 2 cut(s) | 85, 1421 |
| SmoI | CTYRAG | 2 cut(s) | 85, 1421 |
| SrfI | GCCCGGGC | 1 cut(s) | 1817 |
| Sse9I | AATT | 2 cut(s) | 1320, 1328 |
| SspDI | GGCGCC | 1 cut(s) | 1186 |
| SspMI | CTAG | 4 cut(s) | 147, 272, 372, 1931 |
| SstI | GAGCTC | 1 cut(s) | 1422 |
| StyI | CCWWGG | 2 cut(s) | 844, 1464 |
| TaaI | ACNGT | 5 cut(s) | 59, 484, 868, 1975, 2011 |
| TaiI | ACGT | 6 cut(s) | 124, 192, 450, 722, 1581, 1884 |
| TaqI | TCGA | 5 cut(s) | 86, 164, 706, 776, 1485 |
| TaqII | GACCGA | 1 cut(s) | 1808 |
| TasI | AATT | 2 cut(s) | 1320, 1328 |
| TatI | WGTACW | 1 cut(s) | 89 |
| TfiI | GAWTC | 3 cut(s) | 176, 224, 778 |
| Tru1I | TTAA | 2 cut(s) | 1539, 1779 |
| Tru9I | TTAA | 2 cut(s) | 1539, 1779 |
| TscAI | CASTG | 4 cut(s) | 175, 264, 1023, 1978 |
| TseFI | GTSAC | 3 cut(s) | 377, 700, 997 |
| Tsp45I | GTSAC | 3 cut(s) | 377, 700, 997 |
| TspDTI | ATGAA | 6 cut(s) | 1222, 1587, 1700, 1894, 1914, 1974 |
| TspGWI | ACGGA | 1 cut(s) | 225 |
| TspMI | CCCGGG | 2 cut(s) | 1404, 1815 |
| TspRI | CASTG | 4 cut(s) | 175, 264, 1023, 1978 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 300 |
| VpaK11BI | GGWCC | 2 cut(s) | 959, 1032 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 842, 1471 |
| XhoI | CTCGAG | 1 cut(s) | 85 |
| XmaI | CCCGGG | 2 cut(s) | 1404, 1815 |
| XspI | CTAG | 4 cut(s) | 147, 272, 372, 1931 |
| ZrmI | AGTACT | 1 cut(s) | 91 |