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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 448 |
| Acc36I | ACCTGC | 1 cut(s) | 448 |
| AccB1I | GGYRCC | 3 cut(s) | 415, 798, 936 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 724 |
| AccBSI | CCGCTC | 2 cut(s) | 694, 859 |
| AccII | CGCG | 2 cut(s) | 505, 975 |
| AccIII | TCCGGA | 1 cut(s) | 292 |
| AclWI | GGATC | 3 cut(s) | 284, 297, 755 |
| AcoI | YGGCCR | 1 cut(s) | 549 |
| AcsI | RAATTY | 3 cut(s) | 37, 149, 674 |
| AcuI | CTGAAG | 4 cut(s) | 44, 118, 626, 701 |
| AflIII | ACRYGT | 1 cut(s) | 249 |
| AgsI | TTSAA | 2 cut(s) | 155, 770 |
| AjnI | CCWGG | 6 cut(s) | 12, 59, 102, 362, 528, 1028 |
| AluBI | AGCT | 7 cut(s) | 93, 188, 786, 865, 898, 918, 982 |
| AluI | AGCT | 7 cut(s) | 93, 188, 786, 865, 898, 918, 982 |
| Alw26I | GTCTC | 3 cut(s) | 290, 890, 1030 |
| AlwI | GGATC | 3 cut(s) | 284, 297, 755 |
| Aor13HI | TCCGGA | 1 cut(s) | 292 |
| AoxI | GGCC | 7 cut(s) | 105, 270, 360, 549, 597, 626, 1047 |
| ApeKI | GCWGC | 3 cut(s) | 620, 844, 862 |
| ApoI | RAATTY | 3 cut(s) | 37, 149, 674 |
| AspLEI | GCGC | 1 cut(s) | 22 |
| AspS9I | GGNCC | 9 cut(s) | 69, 111, 217, 271, 571, 598, 626, 646, 1048 |
| AsuC2I | CCSGG | 1 cut(s) | 109 |
| AsuNHI | GCTAGC | 1 cut(s) | 265 |
| AvaII | GGWCC | 5 cut(s) | 69, 111, 217, 571, 646 |
| BaeGI | GKGCMC | 2 cut(s) | 420, 801 |
| BamHI | GGATCC | 1 cut(s) | 289 |
| BanI | GGYRCC | 3 cut(s) | 415, 798, 936 |
| BbvI | GCAGC | 3 cut(s) | 607, 856, 874 |
| BccI | CCATC | 2 cut(s) | 113, 403 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 641, 675 |
| BciT130I | CCWGG | 6 cut(s) | 14, 61, 104, 364, 530, 1030 |
| BciVI | GTATCC | 1 cut(s) | 553 |
| BcnI | CCSGG | 1 cut(s) | 109 |
| BcoDI | GTCTC | 3 cut(s) | 290, 890, 1030 |
| BfaI | CTAG | 5 cut(s) | 189, 266, 387, 899, 1034 |
| BfmI | CTRYAG | 2 cut(s) | 474, 781 |
| BfoI | RGCGCY | 1 cut(s) | 23 |
| BfuAI | ACCTGC | 1 cut(s) | 448 |
| BfuI | GTATCC | 1 cut(s) | 553 |
| BlpI | GCTNAGC | 2 cut(s) | 690, 787 |
| Bme1390I | CCNGG | 7 cut(s) | 14, 61, 104, 109, 364, 530, 1030 |
| Bme18I | GGWCC | 5 cut(s) | 69, 111, 217, 571, 646 |
| BmgT120I | GGNCC | 9 cut(s) | 69, 111, 217, 271, 571, 598, 626, 646, 1048 |
| BmrFI | CCNGG | 7 cut(s) | 14, 61, 104, 109, 364, 530, 1030 |
| BmsI | GCATC | 4 cut(s) | 329, 916, 949, 958 |
| BmtI | GCTAGC | 1 cut(s) | 269 |
| BpmI | CTGGAG | 5 cut(s) | 263, 470, 761, 872, 1012 |
| Bpu10I | CCTNAGC | 1 cut(s) | 866 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 690, 787 |
| BpuMI | CCSGG | 1 cut(s) | 109 |
| BsaI | GGTCTC | 1 cut(s) | 890 |
| BsaJI | CCNNGG | 7 cut(s) | 13, 59, 213, 357, 565, 849, 945 |
| BsaWI | WCCGGW | 1 cut(s) | 292 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 236, 266, 362, 392, 1010, 1040 |
| Bse1I | ACTGG | 2 cut(s) | 313, 431 |
| Bse3DI | GCAATG | 1 cut(s) | 438 |
| BseAI | TCCGGA | 1 cut(s) | 292 |
| BseBI | CCWGG | 6 cut(s) | 14, 61, 104, 364, 530, 1030 |
| BseDI | CCNNGG | 7 cut(s) | 13, 59, 213, 357, 565, 849, 945 |
| BseGI | GGATG | 6 cut(s) | 381, 547, 776, 877, 931, 1009 |
| BseMI | GCAATG | 1 cut(s) | 438 |
| BseMII | CTCAG | 3 cut(s) | 681, 801, 880 |
| BseNI | ACTGG | 2 cut(s) | 313, 431 |
| BseSI | GKGCMC | 2 cut(s) | 420, 801 |
| BseX3I | CGGCCG | 1 cut(s) | 549 |
| BseXI | GCAGC | 3 cut(s) | 607, 856, 874 |
| BseYI | CCCAGC | 2 cut(s) | 93, 623 |
| Bsh1236I | CGCG | 2 cut(s) | 505, 975 |
| Bsh1285I | CGRYCG | 1 cut(s) | 552 |
| BshFI | GGCC | 7 cut(s) | 107, 272, 362, 551, 599, 628, 1049 |
| BshNI | GGYRCC | 3 cut(s) | 415, 798, 936 |
| BsiEI | CGRYCG | 1 cut(s) | 552 |
| BsiSI | CCGG | 3 cut(s) | 108, 293, 629 |
| BslFI | GGGAC | 1 cut(s) | 82 |
| BsmAI | GTCTC | 3 cut(s) | 290, 890, 1030 |
| BsmFI | GGGAC | 1 cut(s) | 82 |
| BsnI | GGCC | 7 cut(s) | 107, 272, 362, 551, 599, 628, 1049 |
| Bso31I | GGTCTC | 1 cut(s) | 890 |
| Bsp1286I | GDGCHC | 2 cut(s) | 420, 801 |
| Bsp13I | TCCGGA | 1 cut(s) | 292 |
| Bsp143I | GATC | 3 cut(s) | 228, 289, 747 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 690, 787 |
| Bsp19I | CCATGG | 1 cut(s) | 213 |
| BspANI | GGCC | 7 cut(s) | 107, 272, 362, 551, 599, 628, 1049 |
| BspCNI | CTCAG | 3 cut(s) | 682, 800, 879 |
| BspEI | TCCGGA | 1 cut(s) | 292 |
| BspFNI | CGCG | 2 cut(s) | 505, 975 |
| BspHI | TCATGA | 1 cut(s) | 193 |
| BspMI | ACCTGC | 1 cut(s) | 448 |
| BspOI | GCTAGC | 1 cut(s) | 269 |
| BspPI | GGATC | 3 cut(s) | 284, 297, 755 |
| BspQI | GCTCTTC | 1 cut(s) | 899 |
| BspT107I | GGYRCC | 3 cut(s) | 415, 798, 936 |
| BspTNI | GGTCTC | 1 cut(s) | 890 |
| BsrBI | CCGCTC | 2 cut(s) | 694, 859 |
| BsrDI | GCAATG | 1 cut(s) | 438 |
| BsrI | ACTGG | 2 cut(s) | 313, 431 |
| BssECI | CCNNGG | 7 cut(s) | 13, 59, 213, 357, 565, 849, 945 |
| BssMI | GATC | 3 cut(s) | 228, 289, 747 |
| BssT1I | CCWWGG | 4 cut(s) | 213, 565, 849, 945 |
| Bst2UI | CCWGG | 6 cut(s) | 14, 61, 104, 364, 530, 1030 |
| Bst4CI | ACNGT | 7 cut(s) | 88, 221, 283, 495, 616, 774, 936 |
| Bst6I | CTCTTC | 1 cut(s) | 899 |
| BstC8I | GCNNGC | 8 cut(s) | 267, 578, 597, 639, 719, 737, 973, 980 |
| BstDEI | CTNAG | 4 cut(s) | 225, 690, 787, 866 |
| BstDSI | CCRYGG | 1 cut(s) | 213 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 683, 944, 1055 |
| BstF5I | GGATG | 6 cut(s) | 381, 547, 776, 877, 931, 1009 |
| BstFNI | CGCG | 2 cut(s) | 505, 975 |
| BstH2I | RGCGCY | 1 cut(s) | 23 |
| BstHHI | GCGC | 1 cut(s) | 22 |
| BstKTI | GATC | 3 cut(s) | 231, 292, 750 |
| BstMAI | GTCTC | 3 cut(s) | 290, 890, 1030 |
| BstMBI | GATC | 3 cut(s) | 228, 289, 747 |
| BstMCI | CGRYCG | 1 cut(s) | 552 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 397, 454, 511, 596, 617, 634, 668, 915, 968 |
| BstNI | CCWGG | 6 cut(s) | 14, 61, 104, 364, 530, 1030 |
| BstNSI | RCATGY | 1 cut(s) | 253 |
| BstSCI | CCNGG | 7 cut(s) | 12, 59, 102, 107, 362, 528, 1028 |
| BstSFI | CTRYAG | 2 cut(s) | 474, 781 |
| BstSLI | GKGCMC | 2 cut(s) | 420, 801 |
| BstUI | CGCG | 2 cut(s) | 505, 975 |
| BstV1I | GCAGC | 3 cut(s) | 607, 856, 874 |
| BstX2I | RGATCY | 1 cut(s) | 289 |
| BstYI | RGATCY | 1 cut(s) | 289 |
| BstZI | CGGCCG | 1 cut(s) | 549 |
| BsuI | GTATCC | 1 cut(s) | 553 |
| BsuRI | GGCC | 7 cut(s) | 107, 272, 362, 551, 599, 628, 1049 |
| BtgI | CCRYGG | 1 cut(s) | 213 |
| BtsCI | GGATG | 6 cut(s) | 381, 547, 776, 877, 931, 1009 |
| BtsI | GCAGTG | 1 cut(s) | 312 |
| BtsIMutI | CAGTG | 2 cut(s) | 312, 438 |
| BveI | ACCTGC | 1 cut(s) | 448 |
| Cac8I | GCNNGC | 8 cut(s) | 267, 578, 597, 639, 719, 737, 973, 980 |
| CciI | TCATGA | 1 cut(s) | 193 |
| CfoI | GCGC | 1 cut(s) | 22 |
| Cfr13I | GGNCC | 9 cut(s) | 69, 111, 217, 271, 571, 598, 626, 646, 1048 |
| CsiI | ACCWGGT | 1 cut(s) | 528 |
| CviAII | CATG | 6 cut(s) | 52, 194, 214, 250, 818, 1022 |
| DdeI | CTNAG | 4 cut(s) | 225, 690, 787, 866 |
| DpnI | GATC | 3 cut(s) | 230, 291, 749 |
| DpnII | GATC | 3 cut(s) | 228, 289, 747 |
| EaeI | YGGCCR | 1 cut(s) | 549 |
| EagI | CGGCCG | 1 cut(s) | 549 |
| Eam1104I | CTCTTC | 1 cut(s) | 899 |
| EarI | CTCTTC | 1 cut(s) | 899 |
| EciI | GGCGGA | 2 cut(s) | 162, 563 |
| EclXI | CGGCCG | 1 cut(s) | 549 |
| Eco130I | CCWWGG | 4 cut(s) | 213, 565, 849, 945 |
| Eco31I | GGTCTC | 1 cut(s) | 890 |
| Eco32I | GATATC | 1 cut(s) | 469 |
| Eco47I | GGWCC | 5 cut(s) | 69, 111, 217, 571, 646 |
| Eco52I | CGGCCG | 1 cut(s) | 549 |
| Eco57I | CTGAAG | 4 cut(s) | 44, 118, 626, 701 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 683, 944, 1055 |
| EcoO109I | RGGNCCY | 3 cut(s) | 69, 598, 646 |
| EcoRI | GAATTC | 1 cut(s) | 674 |
| EcoRII | CCWGG | 6 cut(s) | 12, 59, 102, 362, 528, 1028 |
| EcoRV | GATATC | 1 cut(s) | 469 |
| EcoT14I | CCWWGG | 4 cut(s) | 213, 565, 849, 945 |
| ErhI | CCWWGG | 4 cut(s) | 213, 565, 849, 945 |
| FaeI | CATG | 6 cut(s) | 55, 197, 217, 253, 821, 1025 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 833, 865, 902, 934 |
| FaqI | GGGAC | 1 cut(s) | 82 |
| FatI | CATG | 6 cut(s) | 51, 193, 213, 249, 817, 1021 |
| FauI | CCCGC | 2 cut(s) | 687, 728 |
| FauNDI | CATATG | 2 cut(s) | 667, 752 |
| FokI | GGATG | 6 cut(s) | 388, 554, 763, 884, 938, 1016 |
| FspBI | CTAG | 5 cut(s) | 189, 266, 387, 899, 1034 |
| GlaI | GCGC | 1 cut(s) | 21 |
| GsaI | CCCAGC | 2 cut(s) | 97, 627 |
| GsuI | CTGGAG | 5 cut(s) | 263, 470, 761, 872, 1012 |
| HaeII | RGCGCY | 1 cut(s) | 23 |
| HaeIII | GGCC | 7 cut(s) | 107, 272, 362, 551, 599, 628, 1049 |
| HapII | CCGG | 3 cut(s) | 108, 293, 629 |
| HhaI | GCGC | 1 cut(s) | 22 |
| Hin1II | CATG | 6 cut(s) | 55, 197, 217, 253, 821, 1025 |
| Hin6I | GCGC | 1 cut(s) | 20 |
| HinP1I | GCGC | 1 cut(s) | 20 |
| HincII | GTYRAC | 1 cut(s) | 535 |
| HindII | GTYRAC | 1 cut(s) | 535 |
| HinfI | GANTC | 4 cut(s) | 47, 167, 322, 653 |
| HpaII | CCGG | 3 cut(s) | 108, 293, 629 |
| Hpy166II | GTNNAC | 2 cut(s) | 310, 535 |
| Hpy188I | TCNGA | 3 cut(s) | 148, 164, 319 |
| Hpy188III | TCNNGA | 7 cut(s) | 136, 194, 205, 242, 293, 679, 889 |
| Hpy8I | GTNNAC | 2 cut(s) | 310, 535 |
| HpyAV | CCTTC | 7 cut(s) | 142, 397, 580, 601, 676, 802, 1051 |
| HpyCH4III | ACNGT | 7 cut(s) | 88, 221, 283, 495, 616, 774, 936 |
| HpyCH4IV | ACGT | 1 cut(s) | 537 |
| HpyCH4V | TGCA | 3 cut(s) | 443, 637, 671 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 397, 454, 511, 596, 617, 634, 668, 915, 968 |
| HpyF3I | CTNAG | 4 cut(s) | 225, 690, 787, 866 |
| HpySE526I | ACGT | 1 cut(s) | 537 |
| Hsp92II | CATG | 6 cut(s) | 55, 197, 217, 253, 821, 1025 |
| HspAI | GCGC | 1 cut(s) | 20 |
| Kpn2I | TCCGGA | 1 cut(s) | 292 |
| Kzo9I | GATC | 3 cut(s) | 228, 289, 747 |
| LguI | GCTCTTC | 1 cut(s) | 899 |
| LmnI | GCTCC | 5 cut(s) | 124, 451, 761, 856, 895 |
| Lsp1109I | GCAGC | 3 cut(s) | 607, 856, 874 |
| LweI | GCATC | 4 cut(s) | 329, 916, 949, 958 |
| MabI | ACCWGGT | 1 cut(s) | 528 |
| MaeI | CTAG | 5 cut(s) | 189, 266, 387, 899, 1034 |
| MaeII | ACGT | 1 cut(s) | 537 |
| MaeIII | GTNAC | 2 cut(s) | 433, 487 |
| MalI | GATC | 3 cut(s) | 230, 291, 749 |
| MbiI | CCGCTC | 2 cut(s) | 694, 859 |
| MboI | GATC | 3 cut(s) | 228, 289, 747 |
| MboII | GAAGA | 2 cut(s) | 595, 916 |
| MflI | RGATCY | 1 cut(s) | 289 |
| MhlI | GDGCHC | 2 cut(s) | 420, 801 |
| MluCI | AATT | 5 cut(s) | 30, 37, 149, 235, 674 |
| MlyI | GAGTC | 2 cut(s) | 331, 647 |
| MmeI | TCCRAC | 3 cut(s) | 138, 783, 790 |
| MroI | TCCGGA | 1 cut(s) | 292 |
| MseI | TTAA | 2 cut(s) | 29, 141 |
| MspA1I | CMGCKG | 4 cut(s) | 93, 482, 580, 965 |
| MspI | CCGG | 3 cut(s) | 108, 293, 629 |
| MspR9I | CCNGG | 7 cut(s) | 14, 61, 104, 109, 364, 530, 1030 |
| MvaI | CCWGG | 6 cut(s) | 14, 61, 104, 364, 530, 1030 |
| MvnI | CGCG | 2 cut(s) | 505, 975 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 397, 454, 511, 596, 617, 634, 668, 915, 968 |
| NciI | CCSGG | 1 cut(s) | 109 |
| NcoI | CCATGG | 1 cut(s) | 213 |
| NdeI | CATATG | 2 cut(s) | 667, 752 |
| NdeII | GATC | 3 cut(s) | 228, 289, 747 |
| NheI | GCTAGC | 1 cut(s) | 265 |
| NlaIII | CATG | 6 cut(s) | 55, 197, 217, 253, 821, 1025 |
| NmeAIII | GCCGAG | 2 cut(s) | 201, 338 |
| NmuCI | GTSAC | 2 cut(s) | 433, 487 |
| NspI | RCATGY | 1 cut(s) | 253 |
| PagI | TCATGA | 1 cut(s) | 193 |
| PaqCI | CACCTGC | 1 cut(s) | 448 |
| PciI | ACATGT | 1 cut(s) | 249 |
| PciSI | GCTCTTC | 1 cut(s) | 899 |
| PfeI | GAWTC | 2 cut(s) | 47, 167 |
| PflFI | GACNNNGTC | 2 cut(s) | 530, 1022 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 724 |
| PleI | GAGTC | 2 cut(s) | 330, 647 |
| PpsI | GAGTC | 2 cut(s) | 330, 647 |
| PpuMI | RGGWCCY | 2 cut(s) | 69, 646 |
| PscI | ACATGT | 1 cut(s) | 249 |
| Psp5II | RGGWCCY | 2 cut(s) | 69, 646 |
| Psp6I | CCWGG | 6 cut(s) | 12, 59, 102, 362, 528, 1028 |
| PspFI | CCCAGC | 2 cut(s) | 93, 623 |
| PspGI | CCWGG | 6 cut(s) | 12, 59, 102, 362, 528, 1028 |
| PspPI | GGNCC | 9 cut(s) | 69, 111, 217, 271, 571, 598, 626, 646, 1048 |
| PspPPI | RGGWCCY | 2 cut(s) | 69, 646 |
| PsuI | RGATCY | 1 cut(s) | 289 |
| PsyI | GACNNNGTC | 2 cut(s) | 530, 1022 |
| PvuII | CAGCTG | 1 cut(s) | 93 |
| SapI | GCTCTTC | 1 cut(s) | 899 |
| SaqAI | TTAA | 2 cut(s) | 29, 141 |
| Sau3AI | GATC | 3 cut(s) | 228, 289, 747 |
| Sau96I | GGNCC | 9 cut(s) | 69, 111, 217, 271, 571, 598, 626, 646, 1048 |
| SchI | GAGTC | 2 cut(s) | 331, 647 |
| ScrFI | CCNGG | 7 cut(s) | 14, 61, 104, 109, 364, 530, 1030 |
| SduI | GDGCHC | 2 cut(s) | 420, 801 |
| SexAI | ACCWGGT | 1 cut(s) | 528 |
| SfaNI | GCATC | 4 cut(s) | 329, 916, 949, 958 |
| SfcI | CTRYAG | 2 cut(s) | 474, 781 |
| SinI | GGWCC | 5 cut(s) | 69, 111, 217, 571, 646 |
| Sse9I | AATT | 5 cut(s) | 30, 37, 149, 235, 674 |
| SspMI | CTAG | 5 cut(s) | 189, 266, 387, 899, 1034 |
| StyD4I | CCNGG | 7 cut(s) | 12, 59, 102, 107, 362, 528, 1028 |
| StyI | CCWWGG | 4 cut(s) | 213, 565, 849, 945 |
| TaaI | ACNGT | 7 cut(s) | 88, 221, 283, 495, 616, 774, 936 |
| TaiI | ACGT | 1 cut(s) | 540 |
| TaqI | TCGA | 2 cut(s) | 204, 651 |
| TasI | AATT | 5 cut(s) | 30, 37, 149, 235, 674 |
| TfiI | GAWTC | 2 cut(s) | 47, 167 |
| Tru1I | TTAA | 2 cut(s) | 29, 141 |
| Tru9I | TTAA | 2 cut(s) | 29, 141 |
| TscAI | CASTG | 2 cut(s) | 312, 438 |
| TseFI | GTSAC | 2 cut(s) | 433, 487 |
| TseI | GCWGC | 3 cut(s) | 620, 844, 862 |
| Tsp45I | GTSAC | 2 cut(s) | 433, 487 |
| TspDTI | ATGAA | 2 cut(s) | 691, 834 |
| TspGWI | ACGGA | 3 cut(s) | 383, 796, 938 |
| TspRI | CASTG | 2 cut(s) | 312, 438 |
| Tth111I | GACNNNGTC | 2 cut(s) | 530, 1022 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 724 |
| VpaK11BI | GGWCC | 5 cut(s) | 69, 111, 217, 571, 646 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 683, 944, 1055 |
| XapI | RAATTY | 3 cut(s) | 37, 149, 674 |
| XceI | RCATGY | 1 cut(s) | 253 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 445, 847 |
| XspI | CTAG | 5 cut(s) | 189, 266, 387, 899, 1034 |