Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1704 |
| AatII | GACGTC | 3 cut(s) | 12, 1529, 1620 |
| Acc36I | ACCTGC | 2 cut(s) | 465, 1704 |
| Acc65I | GGTACC | 1 cut(s) | 1092 |
| AccB1I | GGYRCC | 7 cut(s) | 272, 448, 615, 1092, 1692, 1946, 1982 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 1992 |
| AccBSI | CCGCTC | 7 cut(s) | 1335, 1384, 1411, 1549, 1690, 1711, 2256 |
| AccI | GTMKAC | 1 cut(s) | 1448 |
| AccII | CGCG | 7 cut(s) | 62, 750, 757, 844, 1088, 1763, 2132 |
| AclWI | GGATC | 2 cut(s) | 457, 1777 |
| AcoI | YGGCCR | 2 cut(s) | 3, 2074 |
| AcsI | RAATTY | 2 cut(s) | 73, 476 |
| AcuI | CTGAAG | 4 cut(s) | 66, 347, 1181, 1772 |
| AcvI | CACGTG | 1 cut(s) | 1868 |
| AcyI | GRCGYC | 6 cut(s) | 9, 1526, 1617, 1947, 2003, 2144 |
| AdeI | CACNNNGTG | 1 cut(s) | 813 |
| AfaI | GTAC | 8 cut(s) | 585, 608, 701, 722, 1094, 1186, 1330, 1913 |
| AflIII | ACRYGT | 4 cut(s) | 510, 842, 1489, 1734 |
| AgsI | TTSAA | 7 cut(s) | 393, 892, 1474, 1675, 1889, 1897, 2084 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 694, 2220 |
| AjiI | CACGTC | 1 cut(s) | 1312 |
| Alw26I | GTCTC | 2 cut(s) | 848, 2207 |
| AlwI | GGATC | 2 cut(s) | 457, 1777 |
| Ama87I | CYCGRG | 4 cut(s) | 1662, 2095, 2193, 2232 |
| ApoI | RAATTY | 2 cut(s) | 73, 476 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1195, 1227 |
| Asp718I | GGTACC | 1 cut(s) | 1092 |
| AspS9I | GGNCC | 9 cut(s) | 406, 566, 904, 976, 1257, 1573, 1597, 1750, 2185 |
| AsuC2I | CCSGG | 7 cut(s) | 40, 348, 949, 1255, 1754, 2194, 2195 |
| AsuHPI | GGTGA | 8 cut(s) | 367, 799, 1064, 1243, 1391, 1391, 1768, 1847 |
| AvaI | CYCGRG | 4 cut(s) | 1662, 2095, 2193, 2232 |
| AvaII | GGWCC | 4 cut(s) | 566, 904, 976, 1750 |
| AxyI | CCTNAGG | 1 cut(s) | 683 |
| BaeGI | GKGCMC | 4 cut(s) | 506, 1867, 1985, 2056 |
| BalI | TGGCCA | 1 cut(s) | 2076 |
| BanI | GGYRCC | 7 cut(s) | 272, 448, 615, 1092, 1692, 1946, 1982 |
| BanII | GRGCYC | 2 cut(s) | 1001, 1506 |
| BauI | CACGAG | 2 cut(s) | 410, 1508 |
| BbrPI | CACGTG | 1 cut(s) | 1868 |
| BbvCI | CCTCAGC | 3 cut(s) | 644, 1556, 1857 |
| BccI | CCATC | 7 cut(s) | 367, 895, 1637, 1691, 1994, 2195, 2268 |
| BceAI | ACGGC | 8 cut(s) | 127, 286, 299, 864, 984, 1132, 1439, 1481 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1631, 1665 |
| BciVI | GTATCC | 1 cut(s) | 235 |
| BcnI | CCSGG | 7 cut(s) | 40, 348, 949, 1255, 1754, 2194, 2195 |
| BcoDI | GTCTC | 2 cut(s) | 848, 2207 |
| BfaI | CTAG | 3 cut(s) | 131, 1541, 1829 |
| BfmI | CTRYAG | 6 cut(s) | 458, 1697, 1872, 1878, 1970, 2267 |
| BfoI | RGCGCY | 5 cut(s) | 533, 665, 995, 1925, 1950 |
| BfuAI | ACCTGC | 2 cut(s) | 465, 1704 |
| BfuI | GTATCC | 1 cut(s) | 235 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 989, 1313, 1811 |
| BlpI | GCTNAGC | 2 cut(s) | 995, 2136 |
| Bme18I | GGWCC | 4 cut(s) | 566, 904, 976, 1750 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 694, 2220 |
| BmeT110I | CYCGRG | 4 cut(s) | 1662, 2095, 2193, 2232 |
| BmgBI | CACGTC | 1 cut(s) | 1312 |
| BmgT120I | GGNCC | 9 cut(s) | 406, 566, 904, 976, 1257, 1573, 1597, 1750, 2185 |
| BmrI | ACTGGG | 2 cut(s) | 272, 2214 |
| BmsI | GCATC | 6 cut(s) | 492, 768, 1042, 1639, 1648, 1998 |
| BmuI | ACTGGG | 2 cut(s) | 272, 2214 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1273, 1305 |
| BpmI | CTGGAG | 7 cut(s) | 846, 950, 1200, 1302, 1562, 1745, 1871 |
| Bpu10I | CCTNAGC | 4 cut(s) | 644, 1556, 1857, 1951 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 995, 2136 |
| BpuMI | CCSGG | 7 cut(s) | 40, 348, 949, 1255, 1754, 2194, 2195 |
| Bsa29I | ATCGAT | 1 cut(s) | 1989 |
| BsaAI | YACGTR | 2 cut(s) | 610, 1868 |
| BsaHI | GRCGYC | 6 cut(s) | 9, 1526, 1617, 1947, 2003, 2144 |
| BsaI | GGTCTC | 1 cut(s) | 2207 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 213, 243, 923, 953 |
| Bse118I | RCCGGY | 3 cut(s) | 321, 1943, 2011 |
| Bse1I | ACTGG | 5 cut(s) | 278, 707, 1087, 2049, 2220 |
| Bse21I | CCTNAGG | 1 cut(s) | 683 |
| BseCI | ATCGAT | 1 cut(s) | 1989 |
| BseGI | GGATG | 5 cut(s) | 306, 723, 1663, 2206, 2260 |
| BseMII | CTCAG | 7 cut(s) | 658, 674, 986, 1547, 1848, 2148, 2150 |
| BseNI | ACTGG | 5 cut(s) | 278, 707, 1087, 2049, 2220 |
| BsePI | GCGCGC | 1 cut(s) | 755 |
| BseRI | GAGGAG | 6 cut(s) | 237, 395, 794, 849, 1250, 1253 |
| BseSI | GKGCMC | 4 cut(s) | 506, 1867, 1985, 2056 |
| BseYI | CCCAGC | 2 cut(s) | 1136, 2171 |
| BsgI | GTGCAG | 2 cut(s) | 126, 2039 |
| Bsh1236I | CGCG | 7 cut(s) | 62, 750, 757, 844, 1088, 1763, 2132 |
| Bsh1285I | CGRYCG | 4 cut(s) | 573, 1448, 1452, 2016 |
| BshNI | GGYRCC | 7 cut(s) | 272, 448, 615, 1092, 1692, 1946, 1982 |
| BshVI | ATCGAT | 1 cut(s) | 1989 |
| BsiEI | CGRYCG | 4 cut(s) | 573, 1448, 1452, 2016 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1662, 2095, 2193, 2232 |
| BslFI | GGGAC | 9 cut(s) | 176, 701, 1093, 1400, 1598, 1723, 1763, 2149, 2208 |
| BsmAI | GTCTC | 2 cut(s) | 848, 2207 |
| BsmFI | GGGAC | 9 cut(s) | 176, 701, 1093, 1400, 1598, 1723, 1763, 2149, 2208 |
| Bso31I | GGTCTC | 1 cut(s) | 2207 |
| BsoBI | CYCGRG | 4 cut(s) | 1662, 2095, 2193, 2232 |
| Bsp1286I | GDGCHC | 6 cut(s) | 506, 1001, 1506, 1867, 1985, 2056 |
| Bsp143I | GATC | 4 cut(s) | 462, 672, 1782, 1818 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 995, 2136 |
| BspCNI | CTCAG | 7 cut(s) | 657, 675, 987, 1548, 1849, 2149, 2149 |
| BspDI | ATCGAT | 1 cut(s) | 1989 |
| BspFNI | CGCG | 7 cut(s) | 62, 750, 757, 844, 1088, 1763, 2132 |
| BspMAI | CTGCAG | 5 cut(s) | 462, 1701, 1876, 1882, 1974 |
| BspMI | ACCTGC | 2 cut(s) | 465, 1704 |
| BspPI | GGATC | 2 cut(s) | 457, 1777 |
| BspT107I | GGYRCC | 7 cut(s) | 272, 448, 615, 1092, 1692, 1946, 1982 |
| BspTNI | GGTCTC | 1 cut(s) | 2207 |
| BsrBI | CCGCTC | 7 cut(s) | 1335, 1384, 1411, 1549, 1690, 1711, 2256 |
| BsrFI | RCCGGY | 3 cut(s) | 321, 1943, 2011 |
| BsrI | ACTGG | 5 cut(s) | 278, 707, 1087, 2049, 2220 |
| BssAI | RCCGGY | 3 cut(s) | 321, 1943, 2011 |
| BssHII | GCGCGC | 1 cut(s) | 755 |
| BssMI | GATC | 4 cut(s) | 462, 672, 1782, 1818 |
| BssNI | GRCGYC | 6 cut(s) | 9, 1526, 1617, 1947, 2003, 2144 |
| BssSI | CACGAG | 2 cut(s) | 410, 1508 |
| Bst2BI | CACGAG | 2 cut(s) | 410, 1508 |
| Bst4CI | ACNGT | 5 cut(s) | 574, 908, 1379, 2209, 2268 |
| Bst6I | CTCTTC | 1 cut(s) | 735 |
| BstACI | GRCGYC | 6 cut(s) | 9, 1526, 1617, 1947, 2003, 2144 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1871 |
| BstBAI | YACGTR | 2 cut(s) | 610, 1868 |
| BstDEI | CTNAG | 9 cut(s) | 644, 683, 995, 1003, 1556, 1857, 1951, 2136, 2157 |
| BstDSI | CCRYGG | 1 cut(s) | 573 |
| BstEII | GGTNACC | 2 cut(s) | 1249, 1756 |
| BstF5I | GGATG | 5 cut(s) | 306, 723, 1663, 2206, 2260 |
| BstFNI | CGCG | 7 cut(s) | 62, 750, 757, 844, 1088, 1763, 2132 |
| BstH2I | RGCGCY | 5 cut(s) | 533, 665, 995, 1925, 1950 |
| BstKTI | GATC | 4 cut(s) | 465, 675, 1785, 1821 |
| BstMAI | GTCTC | 2 cut(s) | 848, 2207 |
| BstMBI | GATC | 4 cut(s) | 462, 672, 1782, 1818 |
| BstMCI | CGRYCG | 4 cut(s) | 573, 1448, 1452, 2016 |
| BstNSI | RCATGY | 3 cut(s) | 514, 1493, 1738 |
| BstPI | GGTNACC | 2 cut(s) | 1249, 1756 |
| BstSFI | CTRYAG | 6 cut(s) | 458, 1697, 1872, 1878, 1970, 2267 |
| BstSLI | GKGCMC | 4 cut(s) | 506, 1867, 1985, 2056 |
| BstUI | CGCG | 7 cut(s) | 62, 750, 757, 844, 1088, 1763, 2132 |
| BstX2I | RGATCY | 2 cut(s) | 462, 1782 |
| BstYI | RGATCY | 2 cut(s) | 462, 1782 |
| Bsu15I | ATCGAT | 1 cut(s) | 1989 |
| Bsu36I | CCTNAGG | 1 cut(s) | 683 |
| BsuI | GTATCC | 1 cut(s) | 235 |
| BsuTUI | ATCGAT | 1 cut(s) | 1989 |
| BtgI | CCRYGG | 1 cut(s) | 573 |
| BtgZI | GCGATG | 3 cut(s) | 469, 914, 1662 |
| BtrI | CACGTC | 1 cut(s) | 1312 |
| BtsCI | GGATG | 5 cut(s) | 306, 723, 1663, 2206, 2260 |
| BtsI | GCAGTG | 2 cut(s) | 34, 116 |
| BtsIMutI | CAGTG | 4 cut(s) | 34, 116, 2056, 2264 |
| BveI | ACCTGC | 2 cut(s) | 465, 1704 |
| Cfr10I | RCCGGY | 3 cut(s) | 321, 1943, 2011 |
| Cfr13I | GGNCC | 9 cut(s) | 406, 566, 904, 976, 1257, 1573, 1597, 1750, 2185 |
| Cfr9I | CCCGGG | 1 cut(s) | 2193 |
| ClaI | ATCGAT | 1 cut(s) | 1989 |
| CseI | GACGC | 7 cut(s) | 80, 171, 353, 850, 893, 1992, 2152 |
| CsiI | ACCWGGT | 1 cut(s) | 809 |
| Csp6I | GTAC | 8 cut(s) | 584, 607, 700, 721, 1093, 1185, 1329, 1912 |
| CviAII | CATG | 7 cut(s) | 511, 734, 937, 1027, 1490, 1735, 2078 |
| CviQI | GTAC | 8 cut(s) | 584, 607, 700, 721, 1093, 1185, 1329, 1912 |
| DdeI | CTNAG | 9 cut(s) | 644, 683, 995, 1003, 1556, 1857, 1951, 2136, 2157 |
| DinI | GGCGCC | 1 cut(s) | 1948 |
| DpnI | GATC | 4 cut(s) | 464, 674, 1784, 1820 |
| DpnII | GATC | 4 cut(s) | 462, 672, 1782, 1818 |
| DraIII | CACNNNGTG | 1 cut(s) | 813 |
| DriI | GACNNNNNGTC | 2 cut(s) | 694, 2220 |
| EaeI | YGGCCR | 2 cut(s) | 3, 2074 |
| Eam1104I | CTCTTC | 1 cut(s) | 735 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 694, 2220 |
| EarI | CTCTTC | 1 cut(s) | 735 |
| Eco24I | GRGCYC | 2 cut(s) | 1001, 1506 |
| Eco31I | GGTCTC | 1 cut(s) | 2207 |
| Eco47I | GGWCC | 4 cut(s) | 566, 904, 976, 1750 |
| Eco57I | CTGAAG | 4 cut(s) | 66, 347, 1181, 1772 |
| Eco72I | CACGTG | 1 cut(s) | 1868 |
| Eco81I | CCTNAGG | 1 cut(s) | 683 |
| Eco88I | CYCGRG | 4 cut(s) | 1662, 2095, 2193, 2232 |
| Eco91I | GGTNACC | 2 cut(s) | 1249, 1756 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1257 |
| EcoO65I | GGTNACC | 2 cut(s) | 1249, 1756 |
| EcoRI | GAATTC | 1 cut(s) | 476 |
| EcoT38I | GRGCYC | 2 cut(s) | 1001, 1506 |
| EgeI | GGCGCC | 1 cut(s) | 1948 |
| EheI | GGCGCC | 1 cut(s) | 1948 |
| FaeI | CATG | 7 cut(s) | 514, 737, 940, 1030, 1493, 1738, 2081 |
| FaqI | GGGAC | 9 cut(s) | 176, 701, 1093, 1400, 1598, 1723, 1763, 2149, 2208 |
| FatI | CATG | 7 cut(s) | 510, 733, 936, 1026, 1489, 1734, 2077 |
| FblI | GTMKAC | 1 cut(s) | 1448 |
| FokI | GGATG | 5 cut(s) | 313, 710, 1670, 2213, 2247 |
| FriOI | GRGCYC | 2 cut(s) | 1001, 1506 |
| FspBI | CTAG | 3 cut(s) | 131, 1541, 1829 |
| GsaI | CCCAGC | 2 cut(s) | 1140, 2175 |
| GsuI | CTGGAG | 7 cut(s) | 846, 950, 1200, 1302, 1562, 1745, 1871 |
| HaeII | RGCGCY | 5 cut(s) | 533, 665, 995, 1925, 1950 |
| HgaI | GACGC | 7 cut(s) | 80, 171, 353, 850, 893, 1992, 2152 |
| Hin1I | GRCGYC | 6 cut(s) | 9, 1526, 1617, 1947, 2003, 2144 |
| Hin1II | CATG | 7 cut(s) | 514, 737, 940, 1030, 1493, 1738, 2081 |
| HincII | GTYRAC | 6 cut(s) | 283, 319, 640, 1214, 1449, 1615 |
| HindII | GTYRAC | 6 cut(s) | 283, 319, 640, 1214, 1449, 1615 |
| HphI | GGTGA | 8 cut(s) | 367, 799, 1064, 1243, 1391, 1391, 1768, 1847 |
| Hpy166II | GTNNAC | 9 cut(s) | 283, 319, 607, 640, 976, 1187, 1214, 1449, 1615 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 372, 2158, 2242 |
| Hpy188III | TCNNGA | 4 cut(s) | 676, 727, 892, 1579 |
| Hpy8I | GTNNAC | 9 cut(s) | 283, 319, 607, 640, 976, 1187, 1214, 1449, 1615 |
| Hpy99I | CGWCG | 9 cut(s) | 11, 67, 1120, 1313, 1528, 1622, 1629, 1682, 2008 |
| HpyCH4III | ACNGT | 5 cut(s) | 574, 908, 1379, 2209, 2268 |
| HpyCH4IV | ACGT | 9 cut(s) | 9, 609, 1311, 1526, 1617, 1627, 1677, 1867, 1959 |
| HpyCH4V | TGCA | 7 cut(s) | 107, 460, 1699, 1874, 1880, 1972, 2020 |
| HpyF3I | CTNAG | 9 cut(s) | 644, 683, 995, 1003, 1556, 1857, 1951, 2136, 2157 |
| HpySE526I | ACGT | 9 cut(s) | 9, 609, 1311, 1526, 1617, 1627, 1677, 1867, 1959 |
| Hsp92I | GRCGYC | 6 cut(s) | 9, 1526, 1617, 1947, 2003, 2144 |
| Hsp92II | CATG | 7 cut(s) | 514, 737, 940, 1030, 1493, 1738, 2081 |
| KasI | GGCGCC | 1 cut(s) | 1946 |
| KpnI | GGTACC | 1 cut(s) | 1096 |
| KroI | GCCGGC | 1 cut(s) | 1943 |
| KroNI | GCCGGC | 1 cut(s) | 1945 |
| Kzo9I | GATC | 4 cut(s) | 462, 672, 1782, 1818 |
| LweI | GCATC | 6 cut(s) | 492, 768, 1042, 1639, 1648, 1998 |
| MabI | ACCWGGT | 1 cut(s) | 809 |
| MaeI | CTAG | 3 cut(s) | 131, 1541, 1829 |
| MaeII | ACGT | 9 cut(s) | 9, 609, 1311, 1526, 1617, 1627, 1677, 1867, 1959 |
| MaeIII | GTNAC | 8 cut(s) | 144, 183, 433, 881, 1052, 1126, 1249, 1756 |
| MalI | GATC | 4 cut(s) | 464, 674, 1784, 1820 |
| MbiI | CCGCTC | 7 cut(s) | 1335, 1384, 1411, 1549, 1690, 1711, 2256 |
| MboI | GATC | 4 cut(s) | 462, 672, 1782, 1818 |
| MboII | GAAGA | 3 cut(s) | 752, 1285, 1574 |
| MfeI | CAATTG | 1 cut(s) | 836 |
| MflI | RGATCY | 2 cut(s) | 462, 1782 |
| MhlI | GDGCHC | 6 cut(s) | 506, 1001, 1506, 1867, 1985, 2056 |
| MlsI | TGGCCA | 1 cut(s) | 2076 |
| MluCI | AATT | 5 cut(s) | 73, 476, 599, 836, 1889 |
| MluI | ACGCGT | 1 cut(s) | 842 |
| MluNI | TGGCCA | 1 cut(s) | 2076 |
| Mly113I | GGCGCC | 1 cut(s) | 1947 |
| MlyI | GAGTC | 6 cut(s) | 77, 683, 850, 1214, 1472, 1805 |
| MmeI | TCCRAC | 1 cut(s) | 1122 |
| Mox20I | TGGCCA | 1 cut(s) | 2076 |
| MroNI | GCCGGC | 1 cut(s) | 1943 |
| MscI | TGGCCA | 1 cut(s) | 2076 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1047 |
| Msp20I | TGGCCA | 1 cut(s) | 2076 |
| MunI | CAATTG | 1 cut(s) | 836 |
| MvnI | CGCG | 7 cut(s) | 62, 750, 757, 844, 1088, 1763, 2132 |
| NaeI | GCCGGC | 1 cut(s) | 1945 |
| NarI | GGCGCC | 1 cut(s) | 1947 |
| NciI | CCSGG | 7 cut(s) | 40, 348, 949, 1255, 1754, 2194, 2195 |
| NdeII | GATC | 4 cut(s) | 462, 672, 1782, 1818 |
| NgoMIV | GCCGGC | 1 cut(s) | 1943 |
| NlaIII | CATG | 7 cut(s) | 514, 737, 940, 1030, 1493, 1738, 2081 |
| NmeAIII | GCCGAG | 1 cut(s) | 1387 |
| NmuCI | GTSAC | 7 cut(s) | 183, 433, 881, 1052, 1126, 1249, 1756 |
| NspI | RCATGY | 3 cut(s) | 514, 1493, 1738 |
| PaeR7I | CTCGAG | 1 cut(s) | 2095 |
| PaqCI | CACCTGC | 1 cut(s) | 1704 |
| PauI | GCGCGC | 1 cut(s) | 755 |
| PciI | ACATGT | 3 cut(s) | 510, 1489, 1734 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 59, 92, 1683 |
| PdiI | GCCGGC | 1 cut(s) | 1945 |
| PfeI | GAWTC | 6 cut(s) | 35, 778, 1191, 1343, 1419, 2118 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 1992 |
| PfoI | TCCNGGA | 1 cut(s) | 927 |
| PleI | GAGTC | 6 cut(s) | 77, 683, 850, 1214, 1471, 1804 |
| PluTI | GGCGCC | 1 cut(s) | 1950 |
| PmaCI | CACGTG | 1 cut(s) | 1868 |
| PmlI | CACGTG | 1 cut(s) | 1868 |
| PpsI | GAGTC | 6 cut(s) | 77, 683, 850, 1214, 1471, 1804 |
| Ppu21I | YACGTR | 2 cut(s) | 610, 1868 |
| PscI | ACATGT | 3 cut(s) | 510, 1489, 1734 |
| PspCI | CACGTG | 1 cut(s) | 1868 |
| PspEI | GGTNACC | 2 cut(s) | 1249, 1756 |
| PspFI | CCCAGC | 2 cut(s) | 1136, 2171 |
| PspPI | GGNCC | 9 cut(s) | 406, 566, 904, 976, 1257, 1573, 1597, 1750, 2185 |
| PspXI | VCTCGAGB | 1 cut(s) | 2095 |
| PstI | CTGCAG | 5 cut(s) | 462, 1701, 1876, 1882, 1974 |
| PsuI | RGATCY | 2 cut(s) | 462, 1782 |
| PteI | GCGCGC | 1 cut(s) | 755 |
| PvuII | CAGCTG | 5 cut(s) | 648, 1322, 1609, 1877, 1883 |
| RsaI | GTAC | 8 cut(s) | 585, 608, 701, 722, 1094, 1186, 1330, 1913 |
| RsaNI | GTAC | 8 cut(s) | 584, 607, 700, 721, 1093, 1185, 1329, 1912 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1047 |
| SalI | GTCGAC | 1 cut(s) | 1447 |
| Sau3AI | GATC | 4 cut(s) | 462, 672, 1782, 1818 |
| Sau96I | GGNCC | 9 cut(s) | 406, 566, 904, 976, 1257, 1573, 1597, 1750, 2185 |
| SchI | GAGTC | 6 cut(s) | 77, 683, 850, 1214, 1472, 1805 |
| SduI | GDGCHC | 6 cut(s) | 506, 1001, 1506, 1867, 1985, 2056 |
| SexAI | ACCWGGT | 1 cut(s) | 809 |
| SfaNI | GCATC | 6 cut(s) | 492, 768, 1042, 1639, 1648, 1998 |
| SfcI | CTRYAG | 6 cut(s) | 458, 1697, 1872, 1878, 1970, 2267 |
| SfoI | GGCGCC | 1 cut(s) | 1948 |
| Sfr274I | CTCGAG | 1 cut(s) | 2095 |
| SinI | GGWCC | 4 cut(s) | 566, 904, 976, 1750 |
| SlaI | CTCGAG | 1 cut(s) | 2095 |
| SmaI | CCCGGG | 1 cut(s) | 2195 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1047 |
| SmlI | CTYRAG | 1 cut(s) | 2095 |
| SmoI | CTYRAG | 1 cut(s) | 2095 |
| Sse9I | AATT | 5 cut(s) | 73, 476, 599, 836, 1889 |
| SspDI | GGCGCC | 1 cut(s) | 1946 |
| SspI | AATATT | 1 cut(s) | 420 |
| SspMI | CTAG | 3 cut(s) | 131, 1541, 1829 |
| TaaI | ACNGT | 5 cut(s) | 574, 908, 1379, 2209, 2268 |
| TaiI | ACGT | 9 cut(s) | 12, 612, 1314, 1529, 1620, 1630, 1680, 1870, 1962 |
| TaqII | GACCGA | 2 cut(s) | 583, 1434 |
| TasI | AATT | 5 cut(s) | 73, 476, 599, 836, 1889 |
| TatI | WGTACW | 1 cut(s) | 1911 |
| TfiI | GAWTC | 6 cut(s) | 35, 778, 1191, 1343, 1419, 2118 |
| TscAI | CASTG | 4 cut(s) | 34, 123, 2056, 2271 |
| TseFI | GTSAC | 7 cut(s) | 183, 433, 881, 1052, 1126, 1249, 1756 |
| Tsp45I | GTSAC | 7 cut(s) | 183, 433, 881, 1052, 1126, 1249, 1756 |
| TspGWI | ACGGA | 4 cut(s) | 80, 84, 1133, 1281 |
| TspMI | CCCGGG | 1 cut(s) | 2193 |
| TspRI | CASTG | 4 cut(s) | 34, 123, 2056, 2271 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 1992 |
| VpaK11BI | GGWCC | 4 cut(s) | 566, 904, 976, 1750 |
| XapI | RAATTY | 2 cut(s) | 73, 476 |
| XceI | RCATGY | 3 cut(s) | 514, 1493, 1738 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1138 |
| XhoI | CTCGAG | 1 cut(s) | 2095 |
| XmaI | CCCGGG | 1 cut(s) | 2193 |
| XmiI | GTMKAC | 1 cut(s) | 1448 |
| XspI | CTAG | 3 cut(s) | 131, 1541, 1829 |
| ZraI | GACGTC | 3 cut(s) | 10, 1527, 1618 |