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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 111 |
| AccBSI | CCGCTC | 1 cut(s) | 221 |
| AccII | CGCG | 1 cut(s) | 336 |
| AciI | CCGC | 9 cut(s) | 36, 44, 58, 189, 221, 237, 252, 276, 287 |
| AclWI | GGATC | 1 cut(s) | 298 |
| AcoI | YGGCCR | 1 cut(s) | 277 |
| AcyI | GRCGYC | 1 cut(s) | 92 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 25, 116, 143, 286 |
| AflIII | ACRYGT | 1 cut(s) | 308 |
| AjiI | CACGTC | 1 cut(s) | 311 |
| AjnI | CCWGG | 1 cut(s) | 24 |
| AluBI | AGCT | 2 cut(s) | 152, 269 |
| AluI | AGCT | 2 cut(s) | 152, 269 |
| Alw21I | GWGCWC | 1 cut(s) | 154 |
| Alw26I | GTCTC | 4 cut(s) | 3, 177, 197, 317 |
| AlwI | GGATC | 1 cut(s) | 298 |
| Ama87I | CYCGRG | 1 cut(s) | 81 |
| AoxI | GGCC | 2 cut(s) | 193, 277 |
| ApeKI | GCWGC | 3 cut(s) | 60, 98, 338 |
| AspLEI | GCGC | 2 cut(s) | 80, 338 |
| AspS9I | GGNCC | 1 cut(s) | 55 |
| AsuC2I | CCSGG | 1 cut(s) | 137 |
| AsuHPI | GGTGA | 2 cut(s) | 42, 59 |
| AvaI | CYCGRG | 1 cut(s) | 81 |
| AvaII | GGWCC | 1 cut(s) | 55 |
| BanII | GRGCYC | 2 cut(s) | 136, 154 |
| Bbv12I | GWGCWC | 1 cut(s) | 154 |
| BbvCI | CCTCAGC | 1 cut(s) | 211 |
| BbvI | GCAGC | 3 cut(s) | 47, 110, 325 |
| BccI | CCATC | 1 cut(s) | 288 |
| BciT130I | CCWGG | 1 cut(s) | 26 |
| BcnI | CCSGG | 1 cut(s) | 137 |
| BcoDI | GTCTC | 4 cut(s) | 3, 177, 197, 317 |
| BfoI | RGCGCY | 1 cut(s) | 81 |
| BisI | GCNGC | 5 cut(s) | 36, 61, 99, 277, 339 |
| BlsI | GCNGC | 5 cut(s) | 37, 62, 100, 278, 340 |
| Bme1390I | CCNGG | 2 cut(s) | 26, 137 |
| Bme18I | GGWCC | 1 cut(s) | 55 |
| BmeT110I | CYCGRG | 1 cut(s) | 81 |
| BmgBI | CACGTC | 1 cut(s) | 311 |
| BmgT120I | GGNCC | 1 cut(s) | 55 |
| BmrFI | CCNGG | 2 cut(s) | 26, 137 |
| BpmI | CTGGAG | 2 cut(s) | 159, 315 |
| Bpu10I | CCTNAGC | 2 cut(s) | 153, 211 |
| BpuMI | CCSGG | 1 cut(s) | 137 |
| BsaHI | GRCGYC | 1 cut(s) | 92 |
| BsaI | GGTCTC | 1 cut(s) | 177 |
| BsaJI | CCNNGG | 3 cut(s) | 25, 135, 196 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 25, 116, 143, 286 |
| Bse118I | RCCGGY | 2 cut(s) | 38, 94 |
| Bse1I | ACTGG | 2 cut(s) | 211, 232 |
| BseBI | CCWGG | 1 cut(s) | 26 |
| BseDI | CCNNGG | 3 cut(s) | 25, 135, 196 |
| BseGI | GGATG | 1 cut(s) | 280 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 25, 116, 143, 286 |
| BseMII | CTCAG | 2 cut(s) | 167, 202 |
| BseNI | ACTGG | 2 cut(s) | 211, 232 |
| BseXI | GCAGC | 3 cut(s) | 47, 110, 325 |
| Bsh1236I | CGCG | 1 cut(s) | 336 |
| BshFI | GGCC | 2 cut(s) | 195, 279 |
| BsiHKAI | GWGCWC | 1 cut(s) | 154 |
| BsiHKCI | CYCGRG | 1 cut(s) | 81 |
| BsiSI | CCGG | 4 cut(s) | 39, 95, 137, 284 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 25, 116, 143, 286 |
| BsmAI | GTCTC | 4 cut(s) | 3, 177, 197, 317 |
| BsmBI | CGTCTC | 1 cut(s) | 317 |
| BsnI | GGCC | 2 cut(s) | 195, 279 |
| Bso31I | GGTCTC | 1 cut(s) | 177 |
| BsoBI | CYCGRG | 1 cut(s) | 81 |
| Bsp1286I | GDGCHC | 2 cut(s) | 136, 154 |
| Bsp143I | GATC | 2 cut(s) | 290, 331 |
| BspACI | CCGC | 9 cut(s) | 36, 44, 58, 189, 221, 237, 252, 276, 287 |
| BspANI | GGCC | 2 cut(s) | 195, 279 |
| BspCNI | CTCAG | 2 cut(s) | 166, 203 |
| BspFNI | CGCG | 1 cut(s) | 336 |
| BspPI | GGATC | 1 cut(s) | 298 |
| BspQI | GCTCTTC | 2 cut(s) | 124, 142 |
| BspTNI | GGTCTC | 1 cut(s) | 177 |
| BsrBI | CCGCTC | 1 cut(s) | 221 |
| BsrFI | RCCGGY | 2 cut(s) | 38, 94 |
| BsrI | ACTGG | 2 cut(s) | 211, 232 |
| BssAI | RCCGGY | 2 cut(s) | 38, 94 |
| BssECI | CCNNGG | 3 cut(s) | 25, 135, 196 |
| BssMI | GATC | 2 cut(s) | 290, 331 |
| BssNI | GRCGYC | 1 cut(s) | 92 |
| BssT1I | CCWWGG | 1 cut(s) | 196 |
| Bst2UI | CCWGG | 1 cut(s) | 26 |
| Bst6I | CTCTTC | 3 cut(s) | 115, 124, 142 |
| BstACI | GRCGYC | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 3 cut(s) | 65, 96, 267 |
| BstDEI | CTNAG | 2 cut(s) | 153, 211 |
| BstF5I | GGATG | 1 cut(s) | 280 |
| BstFNI | CGCG | 1 cut(s) | 336 |
| BstH2I | RGCGCY | 1 cut(s) | 81 |
| BstHHI | GCGC | 2 cut(s) | 80, 338 |
| BstKTI | GATC | 2 cut(s) | 293, 334 |
| BstMAI | GTCTC | 4 cut(s) | 3, 177, 197, 317 |
| BstMBI | GATC | 2 cut(s) | 290, 331 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 41 |
| BstNI | CCWGG | 1 cut(s) | 26 |
| BstSCI | CCNGG | 2 cut(s) | 24, 135 |
| BstUI | CGCG | 1 cut(s) | 336 |
| BstV1I | GCAGC | 3 cut(s) | 47, 110, 325 |
| BstX2I | RGATCY | 1 cut(s) | 290 |
| BstYI | RGATCY | 1 cut(s) | 290 |
| BsuRI | GGCC | 2 cut(s) | 195, 279 |
| BtrI | CACGTC | 1 cut(s) | 311 |
| BtsCI | GGATG | 1 cut(s) | 280 |
| Cac8I | GCNNGC | 3 cut(s) | 65, 96, 267 |
| CfoI | GCGC | 2 cut(s) | 80, 338 |
| Cfr10I | RCCGGY | 2 cut(s) | 38, 94 |
| Cfr13I | GGNCC | 1 cut(s) | 55 |
| CseI | GACGC | 1 cut(s) | 100 |
| CviAII | CATG | 1 cut(s) | 102 |
| CviJI | RGCY | 7 cut(s) | 35, 134, 152, 195, 210, 269, 279 |
| CviKI_1 | RGCY | 7 cut(s) | 35, 134, 152, 195, 210, 269, 279 |
| DdeI | CTNAG | 2 cut(s) | 153, 211 |
| DpnI | GATC | 2 cut(s) | 292, 333 |
| DpnII | GATC | 2 cut(s) | 290, 331 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 111 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 111 |
| EaeI | YGGCCR | 1 cut(s) | 277 |
| Eam1104I | CTCTTC | 3 cut(s) | 115, 124, 142 |
| EarI | CTCTTC | 3 cut(s) | 115, 124, 142 |
| EciI | GGCGGA | 2 cut(s) | 204, 252 |
| Ecl136II | GAGCTC | 1 cut(s) | 152 |
| Eco130I | CCWWGG | 1 cut(s) | 196 |
| Eco24I | GRGCYC | 2 cut(s) | 136, 154 |
| Eco31I | GGTCTC | 1 cut(s) | 177 |
| Eco47I | GGWCC | 1 cut(s) | 55 |
| Eco53kI | GAGCTC | 1 cut(s) | 152 |
| Eco88I | CYCGRG | 1 cut(s) | 81 |
| EcoICRI | GAGCTC | 1 cut(s) | 152 |
| EcoRII | CCWGG | 1 cut(s) | 24 |
| EcoT14I | CCWWGG | 1 cut(s) | 196 |
| EcoT38I | GRGCYC | 2 cut(s) | 136, 154 |
| ErhI | CCWWGG | 1 cut(s) | 196 |
| Esp3I | CGTCTC | 1 cut(s) | 317 |
| FaeI | CATG | 1 cut(s) | 105 |
| FaiI | YATR | 2 cut(s) | 103, 250 |
| FatI | CATG | 1 cut(s) | 101 |
| FauI | CCCGC | 3 cut(s) | 37, 214, 280 |
| Fnu4HI | GCNGC | 5 cut(s) | 36, 61, 99, 277, 339 |
| FokI | GGATG | 1 cut(s) | 267 |
| FriOI | GRGCYC | 2 cut(s) | 136, 154 |
| Fsp4HI | GCNGC | 5 cut(s) | 36, 61, 99, 277, 339 |
| GlaI | GCGC | 2 cut(s) | 79, 337 |
| GluI | GCNGC | 5 cut(s) | 36, 61, 99, 277, 339 |
| GsuI | CTGGAG | 2 cut(s) | 159, 315 |
| HaeII | RGCGCY | 1 cut(s) | 81 |
| HaeIII | GGCC | 2 cut(s) | 195, 279 |
| HapII | CCGG | 4 cut(s) | 39, 95, 137, 284 |
| HgaI | GACGC | 1 cut(s) | 100 |
| HhaI | GCGC | 2 cut(s) | 80, 338 |
| Hin1I | GRCGYC | 1 cut(s) | 92 |
| Hin1II | CATG | 1 cut(s) | 105 |
| Hin6I | GCGC | 2 cut(s) | 78, 336 |
| HinP1I | GCGC | 2 cut(s) | 78, 336 |
| HindIII | AAGCTT | 1 cut(s) | 267 |
| HinfI | GANTC | 3 cut(s) | 21, 105, 255 |
| HpaII | CCGG | 4 cut(s) | 39, 95, 137, 284 |
| HphI | GGTGA | 2 cut(s) | 42, 59 |
| Hpy188I | TCNGA | 1 cut(s) | 168 |
| Hpy188III | TCNNGA | 3 cut(s) | 83, 176, 294 |
| Hpy99I | CGWCG | 2 cut(s) | 8, 117 |
| HpyCH4IV | ACGT | 1 cut(s) | 310 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 41 |
| HpyF3I | CTNAG | 2 cut(s) | 153, 211 |
| HpySE526I | ACGT | 1 cut(s) | 310 |
| Hsp92I | GRCGYC | 1 cut(s) | 92 |
| Hsp92II | CATG | 1 cut(s) | 105 |
| HspAI | GCGC | 2 cut(s) | 78, 336 |
| KroI | GCCGGC | 1 cut(s) | 94 |
| KroNI | GCCGGC | 1 cut(s) | 96 |
| Kzo9I | GATC | 2 cut(s) | 290, 331 |
| LguI | GCTCTTC | 2 cut(s) | 124, 142 |
| LmnI | GCTCC | 1 cut(s) | 323 |
| Lsp1109I | GCAGC | 3 cut(s) | 47, 110, 325 |
| MaeII | ACGT | 1 cut(s) | 310 |
| MaeIII | GTNAC | 1 cut(s) | 47 |
| MalI | GATC | 2 cut(s) | 292, 333 |
| MbiI | CCGCTC | 1 cut(s) | 221 |
| MboI | GATC | 2 cut(s) | 290, 331 |
| MboII | GAAGA | 4 cut(s) | 132, 138, 141, 159 |
| MflI | RGATCY | 1 cut(s) | 290 |
| MhlI | GDGCHC | 2 cut(s) | 136, 154 |
| MlyI | GAGTC | 3 cut(s) | 30, 99, 249 |
| MmeI | TCCRAC | 1 cut(s) | 301 |
| MnlI | CCTC | 9 cut(s) | 46, 110, 116, 137, 162, 172, 185, 206, 292 |
| MroNI | GCCGGC | 1 cut(s) | 94 |
| MseI | TTAA | 1 cut(s) | 271 |
| MspA1I | CMGCKG | 1 cut(s) | 60 |
| MspI | CCGG | 4 cut(s) | 39, 95, 137, 284 |
| MspR9I | CCNGG | 2 cut(s) | 26, 137 |
| MvaI | CCWGG | 1 cut(s) | 26 |
| MvnI | CGCG | 1 cut(s) | 336 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 41 |
| NaeI | GCCGGC | 1 cut(s) | 96 |
| NciI | CCSGG | 1 cut(s) | 137 |
| NdeII | GATC | 2 cut(s) | 290, 331 |
| NgoMIV | GCCGGC | 1 cut(s) | 94 |
| NlaIII | CATG | 1 cut(s) | 105 |
| NmuCI | GTSAC | 1 cut(s) | 47 |
| PaeR7I | CTCGAG | 1 cut(s) | 81 |
| PciSI | GCTCTTC | 2 cut(s) | 124, 142 |
| PdiI | GCCGGC | 1 cut(s) | 96 |
| PkrI | GCNGC | 5 cut(s) | 37, 62, 100, 278, 340 |
| PleI | GAGTC | 3 cut(s) | 29, 99, 249 |
| PpsI | GAGTC | 3 cut(s) | 29, 99, 249 |
| Psp124BI | GAGCTC | 1 cut(s) | 154 |
| Psp6I | CCWGG | 1 cut(s) | 24 |
| PspGI | CCWGG | 1 cut(s) | 24 |
| PspPI | GGNCC | 1 cut(s) | 55 |
| PsuI | RGATCY | 1 cut(s) | 290 |
| SacI | GAGCTC | 1 cut(s) | 154 |
| SapI | GCTCTTC | 2 cut(s) | 124, 142 |
| SaqAI | TTAA | 1 cut(s) | 271 |
| SatI | GCNGC | 5 cut(s) | 36, 61, 99, 277, 339 |
| Sau3AI | GATC | 2 cut(s) | 290, 331 |
| Sau96I | GGNCC | 1 cut(s) | 55 |
| SchI | GAGTC | 3 cut(s) | 30, 99, 249 |
| ScrFI | CCNGG | 2 cut(s) | 26, 137 |
| SduI | GDGCHC | 2 cut(s) | 136, 154 |
| SetI | ASST | 5 cut(s) | 154, 173, 217, 271, 313 |
| Sfr274I | CTCGAG | 1 cut(s) | 81 |
| SgrAI | CRCCGGYG | 1 cut(s) | 38 |
| SinI | GGWCC | 1 cut(s) | 55 |
| SlaI | CTCGAG | 1 cut(s) | 81 |
| SmlI | CTYRAG | 1 cut(s) | 81 |
| SmoI | CTYRAG | 1 cut(s) | 81 |
| SsiI | CCGC | 9 cut(s) | 36, 44, 58, 189, 221, 237, 252, 276, 287 |
| SstI | GAGCTC | 1 cut(s) | 154 |
| StyD4I | CCNGG | 2 cut(s) | 24, 135 |
| StyI | CCWWGG | 1 cut(s) | 196 |
| TaiI | ACGT | 1 cut(s) | 313 |
| TaqI | TCGA | 3 cut(s) | 82, 115, 217 |
| TauI | GCSGC | 2 cut(s) | 38, 279 |
| Tru1I | TTAA | 1 cut(s) | 271 |
| Tru9I | TTAA | 1 cut(s) | 271 |
| TseFI | GTSAC | 1 cut(s) | 47 |
| TseI | GCWGC | 3 cut(s) | 60, 98, 338 |
| Tsp45I | GTSAC | 1 cut(s) | 47 |
| TspDTI | ATGAA | 1 cut(s) | 319 |
| TspGWI | ACGGA | 1 cut(s) | 21 |
| VpaK11BI | GGWCC | 1 cut(s) | 55 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 203 |
| XhoI | CTCGAG | 1 cut(s) | 81 |