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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1928 |
| Acc36I | ACCTGC | 1 cut(s) | 773 |
| Acc65I | GGTACC | 2 cut(s) | 1228, 1919 |
| AccB1I | GGYRCC | 9 cut(s) | 477, 1040, 1105, 1144, 1198, 1228, 1422, 1796, 1919 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 397 |
| AccBSI | CCGCTC | 4 cut(s) | 27, 1196, 1652, 1946 |
| AccI | GTMKAC | 4 cut(s) | 930, 1263, 1607, 1673 |
| AccII | CGCG | 1 cut(s) | 1461 |
| AclWI | GGATC | 3 cut(s) | 722, 1554, 1573 |
| AcoI | YGGCCR | 3 cut(s) | 355, 1278, 1896 |
| AcsI | RAATTY | 2 cut(s) | 407, 640 |
| AcuI | CTGAAG | 2 cut(s) | 314, 1568 |
| AcyI | GRCGYC | 3 cut(s) | 1145, 1670, 1724 |
| AfaI | GTAC | 5 cut(s) | 763, 896, 1230, 1709, 1921 |
| AflIII | ACRYGT | 1 cut(s) | 441 |
| AjiI | CACGTC | 2 cut(s) | 1492, 1510 |
| AjnI | CCWGG | 7 cut(s) | 38, 158, 357, 817, 1047, 1068, 1257 |
| AluBI | AGCT | 8 cut(s) | 775, 834, 954, 1037, 1351, 1384, 1486, 1679 |
| AluI | AGCT | 8 cut(s) | 775, 834, 954, 1037, 1351, 1384, 1486, 1679 |
| Alw26I | GTCTC | 5 cut(s) | 914, 1283, 1376, 1516, 1882 |
| AlwI | GGATC | 3 cut(s) | 722, 1554, 1573 |
| Ama87I | CYCGRG | 2 cut(s) | 22, 1908 |
| AoxI | GGCC | 7 cut(s) | 355, 412, 912, 1003, 1278, 1326, 1896 |
| ApeKI | GCWGC | 6 cut(s) | 517, 834, 1090, 1345, 1348, 1556 |
| ApoI | RAATTY | 2 cut(s) | 407, 640 |
| Asp718I | GGTACC | 2 cut(s) | 1228, 1919 |
| AspLEI | GCGC | 4 cut(s) | 463, 705, 949, 1147 |
| AspS9I | GGNCC | 9 cut(s) | 497, 560, 602, 859, 913, 1004, 1072, 1327, 1953 |
| AsuC2I | CCSGG | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 4 cut(s) | 41, 539, 1008, 1627 |
| AsuII | TTCGAA | 1 cut(s) | 846 |
| AsuNHI | GCTAGC | 2 cut(s) | 5, 266 |
| AvaI | CYCGRG | 2 cut(s) | 22, 1908 |
| AvaII | GGWCC | 6 cut(s) | 497, 560, 602, 859, 1072, 1953 |
| BaeGI | GKGCMC | 3 cut(s) | 1110, 1203, 1801 |
| BanI | GGYRCC | 9 cut(s) | 477, 1040, 1105, 1144, 1198, 1228, 1422, 1796, 1919 |
| BanII | GRGCYC | 2 cut(s) | 805, 1940 |
| BauI | CACGAG | 3 cut(s) | 341, 798, 1947 |
| BbvI | GCAGC | 6 cut(s) | 504, 821, 1102, 1357, 1360, 1568 |
| BccI | CCATC | 6 cut(s) | 275, 586, 604, 1183, 1787, 1910 |
| BceAI | ACGGC | 1 cut(s) | 1463 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1256, 1290 |
| BciT130I | CCWGG | 7 cut(s) | 40, 160, 359, 819, 1049, 1070, 1259 |
| BcnI | CCSGG | 1 cut(s) | 118 |
| BcoDI | GTCTC | 5 cut(s) | 914, 1283, 1376, 1516, 1882 |
| BfmI | CTRYAG | 3 cut(s) | 105, 146, 1674 |
| BfoI | RGCGCY | 4 cut(s) | 464, 706, 950, 1148 |
| BfuAI | ACCTGC | 1 cut(s) | 773 |
| BglII | AGATCT | 2 cut(s) | 18, 748 |
| BlpI | GCTNAGC | 1 cut(s) | 950 |
| Bme1390I | CCNGG | 8 cut(s) | 40, 118, 160, 359, 819, 1049, 1070, 1259 |
| Bme18I | GGWCC | 6 cut(s) | 497, 560, 602, 859, 1072, 1953 |
| BmeT110I | CYCGRG | 2 cut(s) | 22, 1908 |
| BmgBI | CACGTC | 2 cut(s) | 1492, 1510 |
| BmgT120I | GGNCC | 9 cut(s) | 497, 560, 602, 859, 913, 1004, 1072, 1327, 1953 |
| BmrFI | CCNGG | 8 cut(s) | 40, 118, 160, 359, 819, 1049, 1070, 1259 |
| BmsI | GCATC | 6 cut(s) | 972, 997, 1264, 1402, 1435, 1444 |
| BmtI | GCTAGC | 2 cut(s) | 9, 270 |
| BoxI | GACNNNNGTC | 1 cut(s) | 926 |
| BpmI | CTGGAG | 2 cut(s) | 374, 1199 |
| Bpu10I | CCTNAGC | 1 cut(s) | 551 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 950 |
| Bpu14I | TTCGAA | 1 cut(s) | 846 |
| BpuMI | CCSGG | 1 cut(s) | 118 |
| BsaAI | YACGTR | 1 cut(s) | 761 |
| BsaHI | GRCGYC | 3 cut(s) | 1145, 1670, 1724 |
| BsaI | GGTCTC | 2 cut(s) | 1376, 1882 |
| BsaWI | WCCGGW | 1 cut(s) | 485 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 878, 908, 1843, 1873 |
| Bse1I | ACTGG | 3 cut(s) | 1085, 1160, 1733 |
| Bse3DI | GCAATG | 2 cut(s) | 86, 135 |
| BseBI | CCWGG | 7 cut(s) | 40, 160, 359, 819, 1049, 1070, 1259 |
| BseGI | GGATG | 5 cut(s) | 304, 589, 1276, 1417, 1921 |
| BseMI | GCAATG | 2 cut(s) | 86, 135 |
| BseMII | CTCAG | 8 cut(s) | 206, 941, 950, 951, 1366, 1602, 1859, 1880 |
| BseNI | ACTGG | 3 cut(s) | 1085, 1160, 1733 |
| BseRI | GAGGAG | 2 cut(s) | 254, 1373 |
| BseSI | GKGCMC | 3 cut(s) | 1110, 1203, 1801 |
| BseX3I | CGGCCG | 1 cut(s) | 1278 |
| BseXI | GCAGC | 6 cut(s) | 504, 821, 1102, 1357, 1360, 1568 |
| BseYI | CCCAGC | 2 cut(s) | 768, 1728 |
| BsgI | GTGCAG | 4 cut(s) | 503, 1046, 1065, 1109 |
| Bsh1236I | CGCG | 1 cut(s) | 1461 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1281 |
| BshFI | GGCC | 7 cut(s) | 357, 414, 914, 1005, 1280, 1328, 1898 |
| BshNI | GGYRCC | 9 cut(s) | 477, 1040, 1105, 1144, 1198, 1228, 1422, 1796, 1919 |
| BsiEI | CGRYCG | 1 cut(s) | 1281 |
| BsiHKCI | CYCGRG | 2 cut(s) | 22, 1908 |
| BsiSI | CCGG | 2 cut(s) | 118, 486 |
| BslFI | GGGAC | 4 cut(s) | 246, 573, 1058, 1711 |
| BsmAI | GTCTC | 5 cut(s) | 914, 1283, 1376, 1516, 1882 |
| BsmBI | CGTCTC | 1 cut(s) | 1516 |
| BsmFI | GGGAC | 4 cut(s) | 246, 573, 1058, 1711 |
| BsnI | GGCC | 7 cut(s) | 357, 414, 914, 1005, 1280, 1328, 1898 |
| Bso31I | GGTCTC | 2 cut(s) | 1376, 1882 |
| BsoBI | CYCGRG | 2 cut(s) | 22, 1908 |
| Bsp119I | TTCGAA | 1 cut(s) | 846 |
| Bsp1286I | GDGCHC | 5 cut(s) | 805, 1110, 1203, 1801, 1940 |
| Bsp143I | GATC | 9 cut(s) | 18, 348, 714, 748, 784, 870, 1362, 1546, 1578 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 950 |
| Bsp19I | CCATGG | 3 cut(s) | 171, 504, 855 |
| BspANI | GGCC | 7 cut(s) | 357, 414, 914, 1005, 1280, 1328, 1898 |
| BspCNI | CTCAG | 8 cut(s) | 205, 942, 949, 952, 1365, 1603, 1858, 1879 |
| BspFNI | CGCG | 1 cut(s) | 1461 |
| BspMAI | CTGCAG | 1 cut(s) | 109 |
| BspMI | ACCTGC | 1 cut(s) | 773 |
| BspOI | GCTAGC | 2 cut(s) | 9, 270 |
| BspPI | GGATC | 3 cut(s) | 722, 1554, 1573 |
| BspT104I | TTCGAA | 1 cut(s) | 846 |
| BspT107I | GGYRCC | 9 cut(s) | 477, 1040, 1105, 1144, 1198, 1228, 1422, 1796, 1919 |
| BspTNI | GGTCTC | 2 cut(s) | 1376, 1882 |
| BsrBI | CCGCTC | 4 cut(s) | 27, 1196, 1652, 1946 |
| BsrDI | GCAATG | 2 cut(s) | 86, 135 |
| BsrI | ACTGG | 3 cut(s) | 1085, 1160, 1733 |
| BssMI | GATC | 9 cut(s) | 18, 348, 714, 748, 784, 870, 1362, 1546, 1578 |
| BssNI | GRCGYC | 3 cut(s) | 1145, 1670, 1724 |
| BssSI | CACGAG | 3 cut(s) | 341, 798, 1947 |
| BssT1I | CCWWGG | 5 cut(s) | 171, 504, 855, 969, 1431 |
| Bst2BI | CACGAG | 3 cut(s) | 341, 798, 1947 |
| Bst2UI | CCWGG | 7 cut(s) | 40, 160, 359, 819, 1049, 1070, 1259 |
| Bst4CI | ACNGT | 2 cut(s) | 737, 863 |
| Bst6I | CTCTTC | 1 cut(s) | 690 |
| BstACI | GRCGYC | 3 cut(s) | 1145, 1670, 1724 |
| BstBAI | YACGTR | 1 cut(s) | 761 |
| BstBI | TTCGAA | 1 cut(s) | 846 |
| BstDSI | CCRYGG | 4 cut(s) | 171, 504, 855, 1459 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 554, 1430, 1541, 1586 |
| BstF5I | GGATG | 5 cut(s) | 304, 589, 1276, 1417, 1921 |
| BstFNI | CGCG | 1 cut(s) | 1461 |
| BstH2I | RGCGCY | 4 cut(s) | 464, 706, 950, 1148 |
| BstHHI | GCGC | 4 cut(s) | 463, 705, 949, 1147 |
| BstKTI | GATC | 9 cut(s) | 21, 351, 717, 751, 787, 873, 1365, 1549, 1581 |
| BstMAI | GTCTC | 5 cut(s) | 914, 1283, 1376, 1516, 1882 |
| BstMBI | GATC | 9 cut(s) | 18, 348, 714, 748, 784, 870, 1362, 1546, 1578 |
| BstMCI | CGRYCG | 1 cut(s) | 1281 |
| BstNI | CCWGG | 7 cut(s) | 40, 160, 359, 819, 1049, 1070, 1259 |
| BstNSI | RCATGY | 3 cut(s) | 332, 445, 895 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 926 |
| BstSCI | CCNGG | 8 cut(s) | 38, 116, 158, 357, 817, 1047, 1068, 1257 |
| BstSFI | CTRYAG | 3 cut(s) | 105, 146, 1674 |
| BstSLI | GKGCMC | 3 cut(s) | 1110, 1203, 1801 |
| BstSNI | TACGTA | 1 cut(s) | 761 |
| BstUI | CGCG | 1 cut(s) | 1461 |
| BstV1I | GCAGC | 6 cut(s) | 504, 821, 1102, 1357, 1360, 1568 |
| BstX2I | RGATCY | 4 cut(s) | 18, 714, 748, 1578 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1736 |
| BstYI | RGATCY | 4 cut(s) | 18, 714, 748, 1578 |
| BstZI | CGGCCG | 1 cut(s) | 1278 |
| BsuRI | GGCC | 7 cut(s) | 357, 414, 914, 1005, 1280, 1328, 1898 |
| BtgI | CCRYGG | 4 cut(s) | 171, 504, 855, 1459 |
| BtrI | CACGTC | 2 cut(s) | 1492, 1510 |
| BtsCI | GGATG | 5 cut(s) | 304, 589, 1276, 1417, 1921 |
| BtsIMutI | CAGTG | 2 cut(s) | 1092, 1167 |
| BveI | ACCTGC | 1 cut(s) | 773 |
| CfoI | GCGC | 4 cut(s) | 463, 705, 949, 1147 |
| Cfr13I | GGNCC | 9 cut(s) | 497, 560, 602, 859, 913, 1004, 1072, 1327, 1953 |
| Cfr42I | CCGCGG | 1 cut(s) | 1462 |
| CseI | GACGC | 4 cut(s) | 80, 297, 1659, 1713 |
| CsiI | ACCWGGT | 1 cut(s) | 1257 |
| Csp6I | GTAC | 5 cut(s) | 762, 895, 1229, 1708, 1920 |
| CviAII | CATG | 8 cut(s) | 172, 329, 337, 442, 505, 543, 856, 892 |
| CviQI | GTAC | 5 cut(s) | 762, 895, 1229, 1708, 1920 |
| DinI | GGCGCC | 1 cut(s) | 1146 |
| DpnI | GATC | 9 cut(s) | 20, 350, 716, 750, 786, 872, 1364, 1548, 1580 |
| DpnII | GATC | 9 cut(s) | 18, 348, 714, 748, 784, 870, 1362, 1546, 1578 |
| EaeI | YGGCCR | 3 cut(s) | 355, 1278, 1896 |
| EagI | CGGCCG | 1 cut(s) | 1278 |
| Eam1104I | CTCTTC | 1 cut(s) | 690 |
| EarI | CTCTTC | 1 cut(s) | 690 |
| EciI | GGCGGA | 8 cut(s) | 80, 524, 804, 1292, 1403, 1424, 1718, 1850 |
| EclXI | CGGCCG | 1 cut(s) | 1278 |
| Eco105I | TACGTA | 1 cut(s) | 761 |
| Eco130I | CCWWGG | 5 cut(s) | 171, 504, 855, 969, 1431 |
| Eco24I | GRGCYC | 2 cut(s) | 805, 1940 |
| Eco31I | GGTCTC | 2 cut(s) | 1376, 1882 |
| Eco47I | GGWCC | 6 cut(s) | 497, 560, 602, 859, 1072, 1953 |
| Eco52I | CGGCCG | 1 cut(s) | 1278 |
| Eco57I | CTGAAG | 2 cut(s) | 314, 1568 |
| Eco88I | CYCGRG | 2 cut(s) | 22, 1908 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 554, 1430, 1541, 1586 |
| EcoO109I | RGGNCCY | 3 cut(s) | 560, 1072, 1327 |
| EcoRI | GAATTC | 1 cut(s) | 640 |
| EcoRII | CCWGG | 7 cut(s) | 38, 158, 357, 817, 1047, 1068, 1257 |
| EcoT14I | CCWWGG | 5 cut(s) | 171, 504, 855, 969, 1431 |
| EcoT38I | GRGCYC | 2 cut(s) | 805, 1940 |
| EgeI | GGCGCC | 1 cut(s) | 1146 |
| EheI | GGCGCC | 1 cut(s) | 1146 |
| ErhI | CCWWGG | 5 cut(s) | 171, 504, 855, 969, 1431 |
| Esp3I | CGTCTC | 1 cut(s) | 1516 |
| FaeI | CATG | 8 cut(s) | 175, 332, 340, 445, 508, 546, 859, 895 |
| FaqI | GGGAC | 4 cut(s) | 246, 573, 1058, 1711 |
| FatI | CATG | 8 cut(s) | 171, 328, 336, 441, 504, 542, 855, 891 |
| FauI | CCCGC | 6 cut(s) | 271, 381, 1117, 1466, 1805, 1863 |
| FblI | GTMKAC | 4 cut(s) | 930, 1263, 1607, 1673 |
| FokI | GGATG | 5 cut(s) | 311, 596, 1283, 1424, 1928 |
| FriOI | GRGCYC | 2 cut(s) | 805, 1940 |
| GlaI | GCGC | 4 cut(s) | 462, 704, 948, 1146 |
| GsaI | CCCAGC | 2 cut(s) | 772, 1732 |
| GsuI | CTGGAG | 2 cut(s) | 374, 1199 |
| HaeII | RGCGCY | 4 cut(s) | 464, 706, 950, 1148 |
| HaeIII | GGCC | 7 cut(s) | 357, 414, 914, 1005, 1280, 1328, 1898 |
| HapII | CCGG | 2 cut(s) | 118, 486 |
| HgaI | GACGC | 4 cut(s) | 80, 297, 1659, 1713 |
| HhaI | GCGC | 4 cut(s) | 463, 705, 949, 1147 |
| Hin1I | GRCGYC | 3 cut(s) | 1145, 1670, 1724 |
| Hin1II | CATG | 8 cut(s) | 175, 332, 340, 445, 508, 546, 859, 895 |
| Hin6I | GCGC | 4 cut(s) | 461, 703, 947, 1145 |
| HinP1I | GCGC | 4 cut(s) | 461, 703, 947, 1145 |
| HincII | GTYRAC | 2 cut(s) | 931, 1264 |
| HindII | GTYRAC | 2 cut(s) | 931, 1264 |
| HinfI | GANTC | 9 cut(s) | 50, 83, 538, 809, 1299, 1592, 1621, 1660, 1841 |
| HpaII | CCGG | 2 cut(s) | 118, 486 |
| HphI | GGTGA | 4 cut(s) | 41, 539, 1008, 1627 |
| Hpy166II | GTNNAC | 5 cut(s) | 795, 931, 1264, 1608, 1674 |
| Hpy188III | TCNNGA | 4 cut(s) | 22, 391, 655, 1625 |
| Hpy8I | GTNNAC | 5 cut(s) | 795, 931, 1264, 1608, 1674 |
| Hpy99I | CGWCG | 6 cut(s) | 14, 313, 695, 932, 1208, 1268 |
| HpyAV | CCTTC | 6 cut(s) | 289, 573, 1126, 1309, 1330, 1592 |
| HpyCH4III | ACNGT | 2 cut(s) | 737, 863 |
| HpyCH4IV | ACGT | 4 cut(s) | 60, 760, 1491, 1509 |
| HpySE526I | ACGT | 4 cut(s) | 60, 760, 1491, 1509 |
| Hsp92I | GRCGYC | 3 cut(s) | 1145, 1670, 1724 |
| Hsp92II | CATG | 8 cut(s) | 175, 332, 340, 445, 508, 546, 859, 895 |
| HspAI | GCGC | 4 cut(s) | 461, 703, 947, 1145 |
| KasI | GGCGCC | 1 cut(s) | 1144 |
| KpnI | GGTACC | 2 cut(s) | 1232, 1923 |
| KspI | CCGCGG | 1 cut(s) | 1462 |
| Kzo9I | GATC | 9 cut(s) | 18, 348, 714, 748, 784, 870, 1362, 1546, 1578 |
| LmnI | GCTCC | 8 cut(s) | 772, 1034, 1180, 1193, 1342, 1381, 1495, 1649 |
| Lsp1109I | GCAGC | 6 cut(s) | 504, 821, 1102, 1357, 1360, 1568 |
| LweI | GCATC | 6 cut(s) | 972, 997, 1264, 1402, 1435, 1444 |
| MabI | ACCWGGT | 1 cut(s) | 1257 |
| MaeII | ACGT | 4 cut(s) | 60, 760, 1491, 1509 |
| MaeIII | GTNAC | 5 cut(s) | 364, 545, 821, 1162, 1216 |
| MalI | GATC | 9 cut(s) | 20, 350, 716, 750, 786, 872, 1364, 1548, 1580 |
| MbiI | CCGCTC | 4 cut(s) | 27, 1196, 1652, 1946 |
| MboI | GATC | 9 cut(s) | 18, 348, 714, 748, 784, 870, 1362, 1546, 1578 |
| MboII | GAAGA | 5 cut(s) | 343, 707, 1324, 1579, 1630 |
| MflI | RGATCY | 4 cut(s) | 18, 714, 748, 1578 |
| MhlI | GDGCHC | 5 cut(s) | 805, 1110, 1203, 1801, 1940 |
| MluCI | AATT | 3 cut(s) | 407, 640, 739 |
| Mly113I | GGCGCC | 1 cut(s) | 1145 |
| MlyI | GAGTC | 5 cut(s) | 59, 77, 803, 1308, 1835 |
| MmeI | TCCRAC | 5 cut(s) | 524, 617, 629, 669, 1039 |
| MseI | TTAA | 2 cut(s) | 632, 1692 |
| MslI | CAYNNNNRTG | 1 cut(s) | 475 |
| MspA1I | CMGCKG | 5 cut(s) | 292, 1309, 1451, 1461, 1679 |
| MspI | CCGG | 2 cut(s) | 118, 486 |
| MspR9I | CCNGG | 8 cut(s) | 40, 118, 160, 359, 819, 1049, 1070, 1259 |
| MvaI | CCWGG | 7 cut(s) | 40, 160, 359, 819, 1049, 1070, 1259 |
| MvnI | CGCG | 1 cut(s) | 1461 |
| NarI | GGCGCC | 1 cut(s) | 1145 |
| NciI | CCSGG | 1 cut(s) | 118 |
| NcoI | CCATGG | 3 cut(s) | 171, 504, 855 |
| NdeII | GATC | 9 cut(s) | 18, 348, 714, 748, 784, 870, 1362, 1546, 1578 |
| NheI | GCTAGC | 2 cut(s) | 5, 266 |
| NlaIII | CATG | 8 cut(s) | 175, 332, 340, 445, 508, 546, 859, 895 |
| NmeAIII | GCCGAG | 5 cut(s) | 349, 892, 981, 1810, 1959 |
| NmuCI | GTSAC | 4 cut(s) | 364, 545, 1162, 1216 |
| NspI | RCATGY | 3 cut(s) | 332, 445, 895 |
| NspV | TTCGAA | 1 cut(s) | 846 |
| PaeI | GCATGC | 1 cut(s) | 332 |
| PaeR7I | CTCGAG | 1 cut(s) | 22 |
| PasI | CCCWGGG | 2 cut(s) | 159, 1048 |
| PciI | ACATGT | 1 cut(s) | 441 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1761 |
| PfeI | GAWTC | 4 cut(s) | 538, 1592, 1621, 1660 |
| PflFI | GACNNNGTC | 2 cut(s) | 1259, 1508 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 397 |
| PleI | GAGTC | 5 cut(s) | 58, 77, 803, 1307, 1835 |
| PluTI | GGCGCC | 1 cut(s) | 1148 |
| PpsI | GAGTC | 5 cut(s) | 58, 77, 803, 1307, 1835 |
| Ppu21I | YACGTR | 1 cut(s) | 761 |
| PpuMI | RGGWCCY | 2 cut(s) | 560, 1072 |
| PscI | ACATGT | 1 cut(s) | 441 |
| PshAI | GACNNNNGTC | 1 cut(s) | 926 |
| PsiI | TTATAA | 1 cut(s) | 1928 |
| Psp5II | RGGWCCY | 2 cut(s) | 560, 1072 |
| Psp6I | CCWGG | 7 cut(s) | 38, 158, 357, 817, 1047, 1068, 1257 |
| PspFI | CCCAGC | 2 cut(s) | 768, 1728 |
| PspGI | CCWGG | 7 cut(s) | 38, 158, 357, 817, 1047, 1068, 1257 |
| PspPI | GGNCC | 9 cut(s) | 497, 560, 602, 859, 913, 1004, 1072, 1327, 1953 |
| PspPPI | RGGWCCY | 2 cut(s) | 560, 1072 |
| PstI | CTGCAG | 1 cut(s) | 109 |
| PsuI | RGATCY | 4 cut(s) | 18, 714, 748, 1578 |
| PsyI | GACNNNGTC | 2 cut(s) | 1259, 1508 |
| PvuII | CAGCTG | 1 cut(s) | 1679 |
| RsaI | GTAC | 5 cut(s) | 763, 896, 1230, 1709, 1921 |
| RsaNI | GTAC | 5 cut(s) | 762, 895, 1229, 1708, 1920 |
| RseI | CAYNNNNRTG | 1 cut(s) | 475 |
| SacII | CCGCGG | 1 cut(s) | 1462 |
| SalI | GTCGAC | 2 cut(s) | 929, 1262 |
| SaqAI | TTAA | 2 cut(s) | 632, 1692 |
| Sau3AI | GATC | 9 cut(s) | 18, 348, 714, 748, 784, 870, 1362, 1546, 1578 |
| Sau96I | GGNCC | 9 cut(s) | 497, 560, 602, 859, 913, 1004, 1072, 1327, 1953 |
| SbfI | CCTGCAGG | 1 cut(s) | 109 |
| SchI | GAGTC | 5 cut(s) | 59, 77, 803, 1308, 1835 |
| ScrFI | CCNGG | 8 cut(s) | 40, 118, 160, 359, 819, 1049, 1070, 1259 |
| SdaI | CCTGCAGG | 1 cut(s) | 109 |
| SduI | GDGCHC | 5 cut(s) | 805, 1110, 1203, 1801, 1940 |
| SexAI | ACCWGGT | 1 cut(s) | 1257 |
| SfaNI | GCATC | 6 cut(s) | 972, 997, 1264, 1402, 1435, 1444 |
| SfcI | CTRYAG | 3 cut(s) | 105, 146, 1674 |
| SfoI | GGCGCC | 1 cut(s) | 1146 |
| Sfr274I | CTCGAG | 1 cut(s) | 22 |
| Sfr303I | CCGCGG | 1 cut(s) | 1462 |
| SfuI | TTCGAA | 1 cut(s) | 846 |
| SgrBI | CCGCGG | 1 cut(s) | 1462 |
| SinI | GGWCC | 6 cut(s) | 497, 560, 602, 859, 1072, 1953 |
| SlaI | CTCGAG | 1 cut(s) | 22 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 475 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| SnaBI | TACGTA | 1 cut(s) | 761 |
| SphI | GCATGC | 1 cut(s) | 332 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 109 |
| Sse9I | AATT | 3 cut(s) | 407, 640, 739 |
| SspDI | GGCGCC | 1 cut(s) | 1144 |
| StyD4I | CCNGG | 8 cut(s) | 38, 116, 158, 357, 817, 1047, 1068, 1257 |
| StyI | CCWWGG | 5 cut(s) | 171, 504, 855, 969, 1431 |
| TaaI | ACNGT | 2 cut(s) | 737, 863 |
| TaiI | ACGT | 4 cut(s) | 63, 763, 1494, 1512 |
| TaqI | TCGA | 8 cut(s) | 23, 654, 783, 846, 930, 1263, 1334, 1365 |
| TaqII | GACCGA | 1 cut(s) | 301 |
| TasI | AATT | 3 cut(s) | 407, 640, 739 |
| TatI | WGTACW | 1 cut(s) | 1707 |
| TfiI | GAWTC | 4 cut(s) | 538, 1592, 1621, 1660 |
| Tru1I | TTAA | 2 cut(s) | 632, 1692 |
| Tru9I | TTAA | 2 cut(s) | 632, 1692 |
| TscAI | CASTG | 2 cut(s) | 1092, 1167 |
| TseFI | GTSAC | 4 cut(s) | 364, 545, 1162, 1216 |
| TseI | GCWGC | 6 cut(s) | 517, 834, 1090, 1345, 1348, 1556 |
| Tsp45I | GTSAC | 4 cut(s) | 364, 545, 1162, 1216 |
| TspDTI | ATGAA | 1 cut(s) | 420 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspRI | CASTG | 2 cut(s) | 1092, 1167 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1259, 1508 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 397 |
| VpaK11BI | GGWCC | 6 cut(s) | 497, 560, 602, 859, 1072, 1953 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 554, 1430, 1541, 1586 |
| XapI | RAATTY | 2 cut(s) | 407, 640 |
| XbaI | TCTAGA | 1 cut(s) | 1624 |
| XceI | RCATGY | 3 cut(s) | 332, 445, 895 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1055 |
| XhoI | CTCGAG | 1 cut(s) | 22 |
| XmiI | GTMKAC | 4 cut(s) | 930, 1263, 1607, 1673 |