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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 868 |
| Acc36I | ACCTGC | 2 cut(s) | 384, 429 |
| AccB1I | GGYRCC | 4 cut(s) | 911, 973, 1634, 1850 |
| AccBSI | CCGCTC | 5 cut(s) | 299, 727, 1036, 1063, 1276 |
| AccI | GTMKAC | 2 cut(s) | 311, 417 |
| AclWI | GGATC | 3 cut(s) | 356, 501, 1353 |
| AcoI | YGGCCR | 3 cut(s) | 678, 1464, 1527 |
| AcsI | RAATTY | 1 cut(s) | 511 |
| AcuI | CTGAAG | 4 cut(s) | 1108, 1418, 1493, 1944 |
| AcvI | CACGTG | 1 cut(s) | 1814 |
| AcyI | GRCGYC | 4 cut(s) | 974, 1178, 1311, 1941 |
| AfaI | GTAC | 4 cut(s) | 233, 530, 1010, 1729 |
| AflIII | ACRYGT | 1 cut(s) | 320 |
| AgsI | TTSAA | 4 cut(s) | 443, 1541, 1549, 1624 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 184, 1866 |
| AjiI | CACGTC | 1 cut(s) | 1669 |
| AjnI | CCWGG | 1 cut(s) | 672 |
| AleI | CACNNNNGTG | 1 cut(s) | 636 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1025, 1057 |
| Alw21I | GWGCWC | 5 cut(s) | 78, 754, 1209, 1272, 1520 |
| Alw26I | GTCTC | 6 cut(s) | 566, 876, 1252, 1372, 1691, 1853 |
| AlwI | GGATC | 3 cut(s) | 356, 501, 1353 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 944 |
| Ama87I | CYCGRG | 6 cut(s) | 1191, 1271, 1602, 1735, 1839, 1878 |
| ApaI | GGGCCC | 1 cut(s) | 1603 |
| ApeKI | GCWGC | 9 cut(s) | 114, 1186, 1393, 1441, 1523, 1532, 1740, 1777, 1928 |
| ApoI | RAATTY | 1 cut(s) | 511 |
| AsuC2I | CCSGG | 8 cut(s) | 453, 569, 1192, 1193, 1603, 1604, 1840, 1841 |
| AsuHPI | GGTGA | 5 cut(s) | 619, 650, 823, 980, 1499 |
| AvaI | CYCGRG | 6 cut(s) | 1191, 1271, 1602, 1735, 1839, 1878 |
| AvaII | GGWCC | 1 cut(s) | 669 |
| BaeGI | GKGCMC | 2 cut(s) | 916, 1603 |
| BanI | GGYRCC | 4 cut(s) | 911, 973, 1634, 1850 |
| BanII | GRGCYC | 3 cut(s) | 1209, 1272, 1603 |
| BbrPI | CACGTG | 1 cut(s) | 1814 |
| BbsI | GAAGAC | 1 cut(s) | 1577 |
| Bbv12I | GWGCWC | 5 cut(s) | 78, 754, 1209, 1272, 1520 |
| BbvCI | CCTCAGC | 1 cut(s) | 1509 |
| BbvI | GCAGC | 9 cut(s) | 101, 1198, 1380, 1453, 1510, 1519, 1752, 1789, 1915 |
| BccI | CCATC | 4 cut(s) | 604, 638, 1456, 1506 |
| BceAI | ACGGC | 6 cut(s) | 47, 244, 965, 1119, 1691, 1864 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 41, 75 |
| BciT130I | CCWGG | 1 cut(s) | 674 |
| BclI | TGATCA | 1 cut(s) | 1888 |
| BcnI | CCSGG | 8 cut(s) | 453, 569, 1192, 1193, 1603, 1604, 1840, 1841 |
| BcoDI | GTCTC | 6 cut(s) | 566, 876, 1252, 1372, 1691, 1853 |
| BfaI | CTAG | 2 cut(s) | 240, 1283 |
| BfmI | CTRYAG | 2 cut(s) | 558, 1722 |
| BfoI | RGCGCY | 6 cut(s) | 40, 109, 155, 584, 845, 977 |
| BfuAI | ACCTGC | 2 cut(s) | 384, 429 |
| BglII | AGATCT | 1 cut(s) | 1225 |
| BlpI | GCTNAGC | 1 cut(s) | 584 |
| Bme1390I | CCNGG | 9 cut(s) | 453, 569, 674, 1192, 1193, 1603, 1604, 1840, 1841 |
| Bme18I | GGWCC | 1 cut(s) | 669 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 184, 1866 |
| BmeT110I | CYCGRG | 6 cut(s) | 1191, 1271, 1602, 1735, 1839, 1878 |
| BmgBI | CACGTC | 1 cut(s) | 1669 |
| BmrFI | CCNGG | 9 cut(s) | 453, 569, 674, 1192, 1193, 1603, 1604, 1840, 1841 |
| BmrI | ACTGGG | 1 cut(s) | 1860 |
| BmsI | GCATC | 2 cut(s) | 606, 720 |
| BmuI | ACTGGG | 1 cut(s) | 1860 |
| BpiI | GAAGAC | 1 cut(s) | 1577 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1352, 1384 |
| BpmI | CTGGAG | 4 cut(s) | 866, 1214, 1370, 1847 |
| Bpu10I | CCTNAGC | 2 cut(s) | 753, 1509 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 584 |
| BpuEI | CTTGAG | 2 cut(s) | 154, 1193 |
| BpuMI | CCSGG | 8 cut(s) | 453, 569, 1192, 1193, 1603, 1604, 1840, 1841 |
| BsaAI | YACGTR | 1 cut(s) | 1814 |
| BsaHI | GRCGYC | 4 cut(s) | 974, 1178, 1311, 1941 |
| BsaI | GGTCTC | 1 cut(s) | 1853 |
| BsaWI | WCCGGW | 2 cut(s) | 369, 601 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 512, 542, 882, 912, 1025, 1055 |
| Bse118I | RCCGGY | 3 cut(s) | 141, 680, 1675 |
| Bse1I | ACTGG | 6 cut(s) | 403, 589, 625, 803, 1266, 1866 |
| BseBI | CCWGG | 1 cut(s) | 674 |
| BseGI | GGATG | 3 cut(s) | 735, 1467, 1759 |
| BseMII | CTCAG | 8 cut(s) | 164, 270, 575, 731, 767, 1493, 1500, 1551 |
| BseNI | ACTGG | 6 cut(s) | 403, 589, 625, 803, 1266, 1866 |
| BseRI | GAGGAG | 2 cut(s) | 1214, 1217 |
| BseSI | GKGCMC | 2 cut(s) | 916, 1603 |
| BseX3I | CGGCCG | 2 cut(s) | 678, 1527 |
| BseXI | GCAGC | 9 cut(s) | 101, 1198, 1380, 1453, 1510, 1519, 1752, 1789, 1915 |
| BseYI | CCCAGC | 6 cut(s) | 549, 827, 1066, 1480, 1717, 1788 |
| BsgI | GTGCAG | 2 cut(s) | 680, 1460 |
| Bsh1285I | CGRYCG | 7 cut(s) | 681, 711, 1530, 1680, 1875, 1904, 1908 |
| BshNI | GGYRCC | 4 cut(s) | 911, 973, 1634, 1850 |
| BsiEI | CGRYCG | 7 cut(s) | 681, 711, 1530, 1680, 1875, 1904, 1908 |
| BsiHKAI | GWGCWC | 5 cut(s) | 78, 754, 1209, 1272, 1520 |
| BsiHKCI | CYCGRG | 6 cut(s) | 1191, 1271, 1602, 1735, 1839, 1878 |
| BslFI | GGGAC | 5 cut(s) | 191, 214, 315, 682, 1293 |
| BsmAI | GTCTC | 6 cut(s) | 566, 876, 1252, 1372, 1691, 1853 |
| BsmBI | CGTCTC | 1 cut(s) | 566 |
| BsmFI | GGGAC | 5 cut(s) | 191, 214, 315, 682, 1293 |
| Bso31I | GGTCTC | 1 cut(s) | 1853 |
| BsoBI | CYCGRG | 6 cut(s) | 1191, 1271, 1602, 1735, 1839, 1878 |
| Bsp120I | GGGCCC | 1 cut(s) | 1599 |
| Bsp1286I | GDGCHC | 7 cut(s) | 78, 754, 916, 1209, 1272, 1520, 1603 |
| Bsp143I | GATC | 8 cut(s) | 348, 493, 988, 1218, 1225, 1345, 1888, 1901 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 584 |
| Bsp19I | CCATGG | 1 cut(s) | 489 |
| BspCNI | CTCAG | 8 cut(s) | 165, 271, 576, 730, 766, 1494, 1501, 1552 |
| BspHI | TCATGA | 1 cut(s) | 1020 |
| BspMI | ACCTGC | 2 cut(s) | 384, 429 |
| BspPI | GGATC | 3 cut(s) | 356, 501, 1353 |
| BspT107I | GGYRCC | 4 cut(s) | 911, 973, 1634, 1850 |
| BspTNI | GGTCTC | 1 cut(s) | 1853 |
| BsrBI | CCGCTC | 5 cut(s) | 299, 727, 1036, 1063, 1276 |
| BsrFI | RCCGGY | 3 cut(s) | 141, 680, 1675 |
| BsrI | ACTGG | 6 cut(s) | 403, 589, 625, 803, 1266, 1866 |
| BssAI | RCCGGY | 3 cut(s) | 141, 680, 1675 |
| BssMI | GATC | 8 cut(s) | 348, 493, 988, 1218, 1225, 1345, 1888, 1901 |
| BssNAI | GTATAC | 1 cut(s) | 312 |
| BssNI | GRCGYC | 4 cut(s) | 974, 1178, 1311, 1941 |
| BssT1I | CCWWGG | 6 cut(s) | 109, 489, 634, 1251, 1287, 1416 |
| Bst1107I | GTATAC | 1 cut(s) | 312 |
| Bst2UI | CCWGG | 1 cut(s) | 674 |
| Bst4CI | ACNGT | 4 cut(s) | 224, 559, 865, 955 |
| Bst6I | CTCTTC | 3 cut(s) | 324, 879, 888 |
| BstACI | GRCGYC | 4 cut(s) | 974, 1178, 1311, 1941 |
| BstBAI | YACGTR | 1 cut(s) | 1814 |
| BstDEI | CTNAG | 8 cut(s) | 173, 279, 584, 717, 753, 1502, 1509, 1560 |
| BstDSI | CCRYGG | 4 cut(s) | 63, 118, 489, 1315 |
| BstEII | GGTNACC | 1 cut(s) | 1492 |
| BstF5I | GGATG | 3 cut(s) | 735, 1467, 1759 |
| BstH2I | RGCGCY | 6 cut(s) | 40, 109, 155, 584, 845, 977 |
| BstKTI | GATC | 8 cut(s) | 351, 496, 991, 1221, 1228, 1348, 1891, 1904 |
| BstMAI | GTCTC | 6 cut(s) | 566, 876, 1252, 1372, 1691, 1853 |
| BstMBI | GATC | 8 cut(s) | 348, 493, 988, 1218, 1225, 1345, 1888, 1901 |
| BstMCI | CGRYCG | 7 cut(s) | 681, 711, 1530, 1680, 1875, 1904, 1908 |
| BstNI | CCWGG | 1 cut(s) | 674 |
| BstNSI | RCATGY | 1 cut(s) | 1367 |
| BstPI | GGTNACC | 1 cut(s) | 1492 |
| BstSCI | CCNGG | 9 cut(s) | 451, 567, 672, 1190, 1191, 1601, 1602, 1838, 1839 |
| BstSFI | CTRYAG | 2 cut(s) | 558, 1722 |
| BstSLI | GKGCMC | 2 cut(s) | 916, 1603 |
| BstV1I | GCAGC | 9 cut(s) | 101, 1198, 1380, 1453, 1510, 1519, 1752, 1789, 1915 |
| BstV2I | GAAGAC | 1 cut(s) | 1577 |
| BstX2I | RGATCY | 2 cut(s) | 1225, 1345 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 746 |
| BstYI | RGATCY | 2 cut(s) | 1225, 1345 |
| BstZ17I | GTATAC | 1 cut(s) | 312 |
| BstZI | CGGCCG | 2 cut(s) | 678, 1527 |
| BtgI | CCRYGG | 4 cut(s) | 63, 118, 489, 1315 |
| BtgZI | GCGATG | 2 cut(s) | 35, 629 |
| BtrI | CACGTC | 1 cut(s) | 1669 |
| BtsCI | GGATG | 3 cut(s) | 735, 1467, 1759 |
| BveI | ACCTGC | 2 cut(s) | 384, 429 |
| CaiI | CAGNNNCTG | 1 cut(s) | 944 |
| CciI | TCATGA | 1 cut(s) | 1020 |
| CciNI | GCGGCCGC | 1 cut(s) | 1527 |
| Cfr10I | RCCGGY | 3 cut(s) | 141, 680, 1675 |
| Cfr42I | CCGCGG | 1 cut(s) | 1318 |
| Cfr9I | CCCGGG | 3 cut(s) | 1191, 1602, 1839 |
| CseI | GACGC | 4 cut(s) | 328, 845, 1167, 1319 |
| Csp6I | GTAC | 4 cut(s) | 232, 529, 1009, 1728 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 936, 971 |
| CviAII | CATG | 5 cut(s) | 184, 490, 526, 1021, 1364 |
| CviQI | GTAC | 4 cut(s) | 232, 529, 1009, 1728 |
| DdeI | CTNAG | 8 cut(s) | 173, 279, 584, 717, 753, 1502, 1509, 1560 |
| DinI | GGCGCC | 1 cut(s) | 975 |
| DpnI | GATC | 8 cut(s) | 350, 495, 990, 1220, 1227, 1347, 1890, 1903 |
| DpnII | GATC | 8 cut(s) | 348, 493, 988, 1218, 1225, 1345, 1888, 1901 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 868 |
| DriI | GACNNNNNGTC | 2 cut(s) | 184, 1866 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 868 |
| EaeI | YGGCCR | 3 cut(s) | 678, 1464, 1527 |
| EagI | CGGCCG | 2 cut(s) | 678, 1527 |
| Eam1104I | CTCTTC | 3 cut(s) | 324, 879, 888 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 184, 1866 |
| EarI | CTCTTC | 3 cut(s) | 324, 879, 888 |
| Ecl136II | GAGCTC | 2 cut(s) | 1207, 1270 |
| EclXI | CGGCCG | 2 cut(s) | 678, 1527 |
| Eco130I | CCWWGG | 6 cut(s) | 109, 489, 634, 1251, 1287, 1416 |
| Eco24I | GRGCYC | 3 cut(s) | 1209, 1272, 1603 |
| Eco31I | GGTCTC | 1 cut(s) | 1853 |
| Eco47I | GGWCC | 1 cut(s) | 669 |
| Eco52I | CGGCCG | 2 cut(s) | 678, 1527 |
| Eco53kI | GAGCTC | 2 cut(s) | 1207, 1270 |
| Eco57I | CTGAAG | 4 cut(s) | 1108, 1418, 1493, 1944 |
| Eco72I | CACGTG | 1 cut(s) | 1814 |
| Eco88I | CYCGRG | 6 cut(s) | 1191, 1271, 1602, 1735, 1839, 1878 |
| Eco91I | GGTNACC | 1 cut(s) | 1492 |
| EcoICRI | GAGCTC | 2 cut(s) | 1207, 1270 |
| EcoO109I | RGGNCCY | 3 cut(s) | 56, 669, 1599 |
| EcoO65I | GGTNACC | 1 cut(s) | 1492 |
| EcoRII | CCWGG | 1 cut(s) | 672 |
| EcoT14I | CCWWGG | 6 cut(s) | 109, 489, 634, 1251, 1287, 1416 |
| EcoT38I | GRGCYC | 3 cut(s) | 1209, 1272, 1603 |
| EgeI | GGCGCC | 1 cut(s) | 975 |
| EheI | GGCGCC | 1 cut(s) | 975 |
| ErhI | CCWWGG | 6 cut(s) | 109, 489, 634, 1251, 1287, 1416 |
| Esp3I | CGTCTC | 1 cut(s) | 566 |
| FaeI | CATG | 5 cut(s) | 187, 493, 529, 1024, 1367 |
| FaqI | GGGAC | 5 cut(s) | 191, 214, 315, 682, 1293 |
| FatI | CATG | 5 cut(s) | 183, 489, 525, 1020, 1363 |
| FbaI | TGATCA | 1 cut(s) | 1888 |
| FblI | GTMKAC | 2 cut(s) | 311, 417 |
| FokI | GGATG | 3 cut(s) | 742, 1474, 1746 |
| FriOI | GRGCYC | 3 cut(s) | 1209, 1272, 1603 |
| FspBI | CTAG | 2 cut(s) | 240, 1283 |
| GsaI | CCCAGC | 6 cut(s) | 553, 831, 1070, 1484, 1721, 1792 |
| GsuI | CTGGAG | 4 cut(s) | 866, 1214, 1370, 1847 |
| HaeII | RGCGCY | 6 cut(s) | 40, 109, 155, 584, 845, 977 |
| HgaI | GACGC | 4 cut(s) | 328, 845, 1167, 1319 |
| Hin1I | GRCGYC | 4 cut(s) | 974, 1178, 1311, 1941 |
| Hin1II | CATG | 5 cut(s) | 187, 493, 529, 1024, 1367 |
| HincII | GTYRAC | 1 cut(s) | 418 |
| HindII | GTYRAC | 1 cut(s) | 418 |
| HindIII | AAGCTT | 2 cut(s) | 1322, 1427 |
| HinfI | GANTC | 8 cut(s) | 136, 169, 179, 869, 995, 1071, 1448, 1541 |
| HphI | GGTGA | 5 cut(s) | 619, 650, 823, 980, 1499 |
| Hpy166II | GTNNAC | 4 cut(s) | 130, 312, 418, 565 |
| Hpy188III | TCNNGA | 7 cut(s) | 166, 875, 992, 1021, 1231, 1349, 1826 |
| Hpy8I | GTNNAC | 4 cut(s) | 130, 312, 418, 565 |
| Hpy99I | CGWCG | 5 cut(s) | 224, 861, 1105, 1804, 1943 |
| HpyAV | CCTTC | 9 cut(s) | 248, 715, 922, 1009, 1022, 1132, 1393, 1624, 1763 |
| HpyCH4III | ACNGT | 4 cut(s) | 224, 559, 865, 955 |
| HpyCH4IV | ACGT | 3 cut(s) | 575, 1668, 1813 |
| HpyCH4V | TGCA | 3 cut(s) | 661, 947, 1441 |
| HpyF3I | CTNAG | 8 cut(s) | 173, 279, 584, 717, 753, 1502, 1509, 1560 |
| HpySE526I | ACGT | 3 cut(s) | 575, 1668, 1813 |
| Hsp92I | GRCGYC | 4 cut(s) | 974, 1178, 1311, 1941 |
| Hsp92II | CATG | 5 cut(s) | 187, 493, 529, 1024, 1367 |
| KasI | GGCGCC | 1 cut(s) | 973 |
| KflI | GGGWCCC | 1 cut(s) | 669 |
| KroI | GCCGGC | 2 cut(s) | 141, 680 |
| KroNI | GCCGGC | 2 cut(s) | 143, 682 |
| Ksp22I | TGATCA | 1 cut(s) | 1888 |
| KspI | CCGCGG | 1 cut(s) | 1318 |
| Kzo9I | GATC | 8 cut(s) | 348, 493, 988, 1218, 1225, 1345, 1888, 1901 |
| Lsp1109I | GCAGC | 9 cut(s) | 101, 1198, 1380, 1453, 1510, 1519, 1752, 1789, 1915 |
| LweI | GCATC | 2 cut(s) | 606, 720 |
| MaeI | CTAG | 2 cut(s) | 240, 1283 |
| MaeII | ACGT | 3 cut(s) | 575, 1668, 1813 |
| MaeIII | GTNAC | 5 cut(s) | 784, 811, 1155, 1492, 1809 |
| MalI | GATC | 8 cut(s) | 350, 495, 990, 1220, 1227, 1347, 1890, 1903 |
| MbiI | CCGCTC | 5 cut(s) | 299, 727, 1036, 1063, 1276 |
| MboI | GATC | 8 cut(s) | 348, 493, 988, 1218, 1225, 1345, 1888, 1901 |
| MboII | GAAGA | 9 cut(s) | 263, 338, 341, 653, 896, 905, 937, 1417, 1582 |
| MfeI | CAATTG | 1 cut(s) | 1107 |
| MflI | RGATCY | 2 cut(s) | 1225, 1345 |
| MhlI | GDGCHC | 7 cut(s) | 78, 754, 916, 1209, 1272, 1520, 1603 |
| MluCI | AATT | 2 cut(s) | 511, 1107 |
| MluI | ACGCGT | 1 cut(s) | 320 |
| Mly113I | GGCGCC | 1 cut(s) | 974 |
| MlyI | GAGTC | 5 cut(s) | 145, 173, 878, 989, 1457 |
| MmeI | TCCRAC | 5 cut(s) | 310, 839, 1356, 1782, 1895 |
| MroNI | GCCGGC | 2 cut(s) | 141, 680 |
| MseI | TTAA | 3 cut(s) | 273, 1326, 1566 |
| MslI | CAYNNNNRTG | 1 cut(s) | 636 |
| MspA1I | CMGCKG | 9 cut(s) | 827, 1151, 1317, 1444, 1523, 1532, 1721, 1743, 1950 |
| MspR9I | CCNGG | 9 cut(s) | 453, 569, 674, 1192, 1193, 1603, 1604, 1840, 1841 |
| MunI | CAATTG | 1 cut(s) | 1107 |
| MvaI | CCWGG | 1 cut(s) | 674 |
| NaeI | GCCGGC | 2 cut(s) | 143, 682 |
| NarI | GGCGCC | 1 cut(s) | 974 |
| NciI | CCSGG | 8 cut(s) | 453, 569, 1192, 1193, 1603, 1604, 1840, 1841 |
| NcoI | CCATGG | 1 cut(s) | 489 |
| NdeII | GATC | 8 cut(s) | 348, 493, 988, 1218, 1225, 1345, 1888, 1901 |
| NgoMIV | GCCGGC | 2 cut(s) | 141, 680 |
| NlaIII | CATG | 5 cut(s) | 187, 493, 529, 1024, 1367 |
| NmeAIII | GCCGAG | 3 cut(s) | 559, 1030, 1109 |
| NmuCI | GTSAC | 3 cut(s) | 784, 811, 1809 |
| NotI | GCGGCCGC | 1 cut(s) | 1527 |
| NspI | RCATGY | 1 cut(s) | 1367 |
| OliI | CACNNNNGTG | 1 cut(s) | 636 |
| PaeR7I | CTCGAG | 1 cut(s) | 1271 |
| PagI | TCATGA | 1 cut(s) | 1020 |
| PdiI | GCCGGC | 2 cut(s) | 143, 682 |
| PfeI | GAWTC | 3 cut(s) | 169, 1071, 1541 |
| PflFI | GACNNNGTC | 1 cut(s) | 1798 |
| Ple19I | CGATCG | 1 cut(s) | 1904 |
| PleI | GAGTC | 5 cut(s) | 144, 173, 877, 989, 1456 |
| PluTI | GGCGCC | 1 cut(s) | 977 |
| PmaCI | CACGTG | 1 cut(s) | 1814 |
| PmlI | CACGTG | 1 cut(s) | 1814 |
| PpsI | GAGTC | 5 cut(s) | 144, 173, 877, 989, 1456 |
| Ppu21I | YACGTR | 1 cut(s) | 1814 |
| PpuMI | RGGWCCY | 1 cut(s) | 669 |
| Psp124BI | GAGCTC | 2 cut(s) | 1209, 1272 |
| Psp5II | RGGWCCY | 1 cut(s) | 669 |
| Psp6I | CCWGG | 1 cut(s) | 672 |
| PspCI | CACGTG | 1 cut(s) | 1814 |
| PspEI | GGTNACC | 1 cut(s) | 1492 |
| PspFI | CCCAGC | 6 cut(s) | 549, 827, 1066, 1480, 1717, 1788 |
| PspGI | CCWGG | 1 cut(s) | 672 |
| PspOMI | GGGCCC | 1 cut(s) | 1599 |
| PspPPI | RGGWCCY | 1 cut(s) | 669 |
| PspXI | VCTCGAGB | 1 cut(s) | 1271 |
| PstNI | CAGNNNCTG | 1 cut(s) | 944 |
| PsuI | RGATCY | 2 cut(s) | 1225, 1345 |
| PsyI | GACNNNGTC | 1 cut(s) | 1798 |
| PvuI | CGATCG | 1 cut(s) | 1904 |
| PvuII | CAGCTG | 1 cut(s) | 1721 |
| RsaI | GTAC | 4 cut(s) | 233, 530, 1010, 1729 |
| RsaNI | GTAC | 4 cut(s) | 232, 529, 1009, 1728 |
| RseI | CAYNNNNRTG | 1 cut(s) | 636 |
| SacI | GAGCTC | 2 cut(s) | 1209, 1272 |
| SacII | CCGCGG | 1 cut(s) | 1318 |
| SalI | GTCGAC | 1 cut(s) | 416 |
| SaqAI | TTAA | 3 cut(s) | 273, 1326, 1566 |
| Sau3AI | GATC | 8 cut(s) | 348, 493, 988, 1218, 1225, 1345, 1888, 1901 |
| SchI | GAGTC | 5 cut(s) | 145, 173, 878, 989, 1457 |
| ScrFI | CCNGG | 9 cut(s) | 453, 569, 674, 1192, 1193, 1603, 1604, 1840, 1841 |
| SduI | GDGCHC | 7 cut(s) | 78, 754, 916, 1209, 1272, 1520, 1603 |
| SfaNI | GCATC | 2 cut(s) | 606, 720 |
| SfcI | CTRYAG | 2 cut(s) | 558, 1722 |
| SfoI | GGCGCC | 1 cut(s) | 975 |
| Sfr274I | CTCGAG | 1 cut(s) | 1271 |
| Sfr303I | CCGCGG | 1 cut(s) | 1318 |
| SgrBI | CCGCGG | 1 cut(s) | 1318 |
| SinI | GGWCC | 1 cut(s) | 669 |
| SlaI | CTCGAG | 1 cut(s) | 1271 |
| SmaI | CCCGGG | 3 cut(s) | 1193, 1604, 1841 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 636 |
| SmlI | CTYRAG | 3 cut(s) | 133, 1208, 1271 |
| SmoI | CTYRAG | 3 cut(s) | 133, 1208, 1271 |
| SrfI | GCCCGGGC | 1 cut(s) | 1604 |
| Sse9I | AATT | 2 cut(s) | 511, 1107 |
| SspDI | GGCGCC | 1 cut(s) | 973 |
| SspMI | CTAG | 2 cut(s) | 240, 1283 |
| SstI | GAGCTC | 2 cut(s) | 1209, 1272 |
| StyD4I | CCNGG | 9 cut(s) | 451, 567, 672, 1190, 1191, 1601, 1602, 1838, 1839 |
| StyI | CCWWGG | 6 cut(s) | 109, 489, 634, 1251, 1287, 1416 |
| TaaI | ACNGT | 4 cut(s) | 224, 559, 865, 955 |
| TaiI | ACGT | 3 cut(s) | 578, 1671, 1816 |
| TaqI | TCGA | 5 cut(s) | 165, 295, 417, 1272, 1680 |
| TaqII | GACCGA | 1 cut(s) | 1894 |
| TasI | AATT | 2 cut(s) | 511, 1107 |
| TfiI | GAWTC | 3 cut(s) | 169, 1071, 1541 |
| Tru1I | TTAA | 3 cut(s) | 273, 1326, 1566 |
| Tru9I | TTAA | 3 cut(s) | 273, 1326, 1566 |
| TseFI | GTSAC | 3 cut(s) | 784, 811, 1809 |
| TseI | GCWGC | 9 cut(s) | 114, 1186, 1393, 1441, 1523, 1532, 1740, 1777, 1928 |
| Tsp45I | GTSAC | 3 cut(s) | 784, 811, 1809 |
| TspDTI | ATGAA | 3 cut(s) | 38, 1009, 1040 |
| TspMI | CCCGGG | 3 cut(s) | 1191, 1602, 1839 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1798 |
| VpaK11BI | GGWCC | 1 cut(s) | 669 |
| XapI | RAATTY | 1 cut(s) | 511 |
| XceI | RCATGY | 1 cut(s) | 1367 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 632, 1258 |
| XhoI | CTCGAG | 1 cut(s) | 1271 |
| XmaI | CCCGGG | 3 cut(s) | 1191, 1602, 1839 |
| XmiI | GTMKAC | 2 cut(s) | 311, 417 |
| XspI | CTAG | 2 cut(s) | 240, 1283 |