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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 842, 878, 983 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 888 |
| AccBSI | CCGCTC | 2 cut(s) | 586, 598 |
| AccI | GTMKAC | 2 cut(s) | 344, 695 |
| AccII | CGCG | 1 cut(s) | 159 |
| AcoI | YGGCCR | 4 cut(s) | 654, 771, 917, 1167 |
| AcuI | CTGAAG | 4 cut(s) | 74, 352, 668, 1206 |
| AcyI | GRCGYC | 4 cut(s) | 843, 879, 899, 1058 |
| AfaI | GTAC | 3 cut(s) | 226, 791, 949 |
| AfeI | AGCGCT | 1 cut(s) | 751 |
| AflIII | ACRYGT | 1 cut(s) | 630 |
| AgsI | TTSAA | 4 cut(s) | 57, 426, 677, 980 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1116 |
| AjnI | CCWGG | 4 cut(s) | 234, 495, 591, 1074 |
| AleI | CACNNNNGTG | 1 cut(s) | 83 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 270, 302 |
| AluBI | AGCT | 4 cut(s) | 310, 451, 568, 767 |
| AluI | AGCT | 4 cut(s) | 310, 451, 568, 767 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 1 cut(s) | 1103 |
| Ama87I | CYCGRG | 4 cut(s) | 191, 991, 1089, 1128 |
| Aor51HI | AGCGCT | 1 cut(s) | 751 |
| ApaI | GGGCCC | 2 cut(s) | 157, 1137 |
| ApeKI | GCWGC | 5 cut(s) | 307, 400, 767, 776, 868 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 681 |
| AspLEI | GCGC | 4 cut(s) | 6, 752, 845, 881 |
| AspS9I | GGNCC | 5 cut(s) | 153, 154, 493, 1133, 1134 |
| AsuC2I | CCSGG | 3 cut(s) | 151, 1090, 1091 |
| AsuHPI | GGTGA | 5 cut(s) | 13, 58, 287, 287, 743 |
| AvaI | CYCGRG | 4 cut(s) | 191, 991, 1089, 1128 |
| BaeGI | GKGCMC | 3 cut(s) | 157, 387, 1137 |
| BanI | GGYRCC | 3 cut(s) | 842, 878, 983 |
| BanII | GRGCYC | 3 cut(s) | 157, 453, 1137 |
| BauI | CACGAG | 2 cut(s) | 79, 404 |
| BbsI | GAAGAC | 1 cut(s) | 141 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BbvCI | CCTCAGC | 1 cut(s) | 753 |
| BbvI | GCAGC | 5 cut(s) | 319, 387, 754, 763, 880 |
| BccI | CCATC | 4 cut(s) | 266, 808, 890, 1091 |
| BceAI | ACGGC | 5 cut(s) | 50, 87, 234, 390, 764 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 527, 561 |
| BciT130I | CCWGG | 4 cut(s) | 236, 497, 593, 1076 |
| BcnI | CCSGG | 3 cut(s) | 151, 1090, 1091 |
| BcoDI | GTCTC | 1 cut(s) | 1103 |
| BfaI | CTAG | 1 cut(s) | 969 |
| BfmI | CTRYAG | 1 cut(s) | 473 |
| BfoI | RGCGCY | 3 cut(s) | 753, 846, 882 |
| BmcAI | AGTACT | 1 cut(s) | 949 |
| Bme1390I | CCNGG | 7 cut(s) | 151, 236, 497, 593, 1076, 1090, 1091 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1116 |
| BmeT110I | CYCGRG | 4 cut(s) | 191, 991, 1089, 1128 |
| BmgT120I | GGNCC | 5 cut(s) | 153, 154, 493, 1133, 1134 |
| BmrFI | CCNGG | 7 cut(s) | 151, 236, 497, 593, 1076, 1090, 1091 |
| BmrI | ACTGGG | 3 cut(s) | 898, 1042, 1110 |
| BmsI | GCATC | 3 cut(s) | 535, 894, 1171 |
| BmuI | ACTGGG | 3 cut(s) | 898, 1042, 1110 |
| BoxI | GACNNNNGTC | 1 cut(s) | 350 |
| BpiI | GAAGAC | 1 cut(s) | 141 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1013, 1045 |
| BpmI | CTGGAG | 1 cut(s) | 614 |
| Bpu10I | CCTNAGC | 3 cut(s) | 452, 746, 753 |
| BpuMI | CCSGG | 3 cut(s) | 151, 1090, 1091 |
| BsaHI | GRCGYC | 4 cut(s) | 843, 879, 899, 1058 |
| BsaI | GGTCTC | 1 cut(s) | 1103 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 275, 305 |
| Bse118I | RCCGGY | 3 cut(s) | 43, 839, 907 |
| Bse1I | ACTGG | 3 cut(s) | 893, 1048, 1116 |
| BseBI | CCWGG | 4 cut(s) | 236, 497, 593, 1076 |
| BseGI | GGATG | 1 cut(s) | 1102 |
| BseMII | CTCAG | 4 cut(s) | 466, 737, 744, 1046 |
| BseNI | ACTGG | 3 cut(s) | 893, 1048, 1116 |
| BseRI | GAGGAG | 2 cut(s) | 143, 473 |
| BseSI | GKGCMC | 3 cut(s) | 157, 387, 1137 |
| BseX3I | CGGCCG | 1 cut(s) | 771 |
| BseXI | GCAGC | 5 cut(s) | 319, 387, 754, 763, 880 |
| BseYI | CCCAGC | 3 cut(s) | 7, 310, 1204 |
| BsgI | GTGCAG | 1 cut(s) | 386 |
| Bsh1236I | CGCG | 1 cut(s) | 159 |
| Bsh1285I | CGRYCG | 4 cut(s) | 344, 351, 774, 912 |
| BshNI | GGYRCC | 3 cut(s) | 842, 878, 983 |
| BsiEI | CGRYCG | 4 cut(s) | 344, 351, 774, 912 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsiHKCI | CYCGRG | 4 cut(s) | 191, 991, 1089, 1128 |
| BsiSI | CCGG | 6 cut(s) | 44, 117, 150, 840, 908, 1090 |
| BslFI | GGGAC | 4 cut(s) | 494, 619, 1045, 1104 |
| BsmAI | GTCTC | 1 cut(s) | 1103 |
| BsmFI | GGGAC | 4 cut(s) | 494, 619, 1045, 1104 |
| Bso31I | GGTCTC | 1 cut(s) | 1103 |
| BsoBI | CYCGRG | 4 cut(s) | 191, 991, 1089, 1128 |
| Bsp120I | GGGCCC | 2 cut(s) | 153, 1133 |
| Bsp1286I | GDGCHC | 4 cut(s) | 157, 387, 453, 1137 |
| BspCNI | CTCAG | 4 cut(s) | 465, 738, 745, 1045 |
| BspFNI | CGCG | 1 cut(s) | 159 |
| BspT107I | GGYRCC | 3 cut(s) | 842, 878, 983 |
| BspTNI | GGTCTC | 1 cut(s) | 1103 |
| BsrBI | CCGCTC | 2 cut(s) | 586, 598 |
| BsrFI | RCCGGY | 3 cut(s) | 43, 839, 907 |
| BsrI | ACTGG | 3 cut(s) | 893, 1048, 1116 |
| BssAI | RCCGGY | 3 cut(s) | 43, 839, 907 |
| BssNI | GRCGYC | 4 cut(s) | 843, 879, 899, 1058 |
| BssSI | CACGAG | 2 cut(s) | 79, 404 |
| BssT1I | CCWWGG | 1 cut(s) | 660 |
| Bst2BI | CACGAG | 2 cut(s) | 79, 404 |
| Bst2UI | CCWGG | 4 cut(s) | 236, 497, 593, 1076 |
| Bst4CI | ACNGT | 3 cut(s) | 352, 609, 723 |
| Bst6I | CTCTTC | 1 cut(s) | 120 |
| BstACI | GRCGYC | 4 cut(s) | 843, 879, 899, 1058 |
| BstDEI | CTNAG | 4 cut(s) | 452, 746, 753, 1032 |
| BstDSI | CCRYGG | 2 cut(s) | 559, 780 |
| BstF5I | GGATG | 1 cut(s) | 1102 |
| BstFNI | CGCG | 1 cut(s) | 159 |
| BstH2I | RGCGCY | 3 cut(s) | 753, 846, 882 |
| BstHHI | GCGC | 4 cut(s) | 6, 752, 845, 881 |
| BstMAI | GTCTC | 1 cut(s) | 1103 |
| BstMCI | CGRYCG | 4 cut(s) | 344, 351, 774, 912 |
| BstNI | CCWGG | 4 cut(s) | 236, 497, 593, 1076 |
| BstNSI | RCATGY | 1 cut(s) | 634 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 350 |
| BstSCI | CCNGG | 7 cut(s) | 149, 234, 495, 591, 1074, 1088, 1089 |
| BstSFI | CTRYAG | 1 cut(s) | 473 |
| BstSLI | GKGCMC | 3 cut(s) | 157, 387, 1137 |
| BstUI | CGCG | 1 cut(s) | 159 |
| BstV1I | GCAGC | 5 cut(s) | 319, 387, 754, 763, 880 |
| BstV2I | GAAGAC | 1 cut(s) | 141 |
| BstZI | CGGCCG | 1 cut(s) | 771 |
| BtgI | CCRYGG | 2 cut(s) | 559, 780 |
| BtsCI | GGATG | 1 cut(s) | 1102 |
| BtsIMutI | CAGTG | 1 cut(s) | 818 |
| CciNI | GCGGCCGC | 1 cut(s) | 771 |
| CfoI | GCGC | 4 cut(s) | 6, 752, 845, 881 |
| Cfr10I | RCCGGY | 3 cut(s) | 43, 839, 907 |
| Cfr13I | GGNCC | 5 cut(s) | 153, 154, 493, 1133, 1134 |
| Cfr9I | CCCGGG | 1 cut(s) | 1089 |
| CseI | GACGC | 3 cut(s) | 531, 888, 1047 |
| Csp6I | GTAC | 3 cut(s) | 225, 790, 948 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 425, 460 |
| CviAII | CATG | 2 cut(s) | 526, 631 |
| CviQI | GTAC | 3 cut(s) | 225, 790, 948 |
| DdeI | CTNAG | 4 cut(s) | 452, 746, 753, 1032 |
| DinI | GGCGCC | 2 cut(s) | 844, 880 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1116 |
| EaeI | YGGCCR | 4 cut(s) | 654, 771, 917, 1167 |
| EagI | CGGCCG | 1 cut(s) | 771 |
| Eam1104I | CTCTTC | 1 cut(s) | 120 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1116 |
| EarI | CTCTTC | 1 cut(s) | 120 |
| EciI | GGCGGA | 3 cut(s) | 177, 1026, 1109 |
| Ecl136II | GAGCTC | 1 cut(s) | 451 |
| EclXI | CGGCCG | 1 cut(s) | 771 |
| Eco130I | CCWWGG | 1 cut(s) | 660 |
| Eco147I | AGGCCT | 1 cut(s) | 61 |
| Eco24I | GRGCYC | 3 cut(s) | 157, 453, 1137 |
| Eco31I | GGTCTC | 1 cut(s) | 1103 |
| Eco47III | AGCGCT | 1 cut(s) | 751 |
| Eco52I | CGGCCG | 1 cut(s) | 771 |
| Eco53kI | GAGCTC | 1 cut(s) | 451 |
| Eco57I | CTGAAG | 4 cut(s) | 74, 352, 668, 1206 |
| Eco88I | CYCGRG | 4 cut(s) | 191, 991, 1089, 1128 |
| EcoICRI | GAGCTC | 1 cut(s) | 451 |
| EcoO109I | RGGNCCY | 2 cut(s) | 153, 1133 |
| EcoRII | CCWGG | 4 cut(s) | 234, 495, 591, 1074 |
| EcoT14I | CCWWGG | 1 cut(s) | 660 |
| EcoT38I | GRGCYC | 3 cut(s) | 157, 453, 1137 |
| EgeI | GGCGCC | 2 cut(s) | 844, 880 |
| EheI | GGCGCC | 2 cut(s) | 844, 880 |
| ErhI | CCWWGG | 1 cut(s) | 660 |
| FaeI | CATG | 2 cut(s) | 529, 634 |
| FaiI | YATR | 3 cut(s) | 26, 527, 632 |
| FaqI | GGGAC | 4 cut(s) | 494, 619, 1045, 1104 |
| FatI | CATG | 2 cut(s) | 525, 630 |
| FauI | CCCGC | 7 cut(s) | 22, 113, 164, 214, 636, 681, 942 |
| FblI | GTMKAC | 2 cut(s) | 344, 695 |
| FokI | GGATG | 1 cut(s) | 1109 |
| FriOI | GRGCYC | 3 cut(s) | 157, 453, 1137 |
| FspBI | CTAG | 1 cut(s) | 969 |
| GlaI | GCGC | 4 cut(s) | 5, 751, 844, 880 |
| GsaI | CCCAGC | 3 cut(s) | 11, 314, 1208 |
| GsuI | CTGGAG | 1 cut(s) | 614 |
| HaeII | RGCGCY | 3 cut(s) | 753, 846, 882 |
| HapII | CCGG | 6 cut(s) | 44, 117, 150, 840, 908, 1090 |
| HgaI | GACGC | 3 cut(s) | 531, 888, 1047 |
| HhaI | GCGC | 4 cut(s) | 6, 752, 845, 881 |
| Hin1I | GRCGYC | 4 cut(s) | 843, 879, 899, 1058 |
| Hin1II | CATG | 2 cut(s) | 529, 634 |
| Hin6I | GCGC | 4 cut(s) | 4, 750, 843, 879 |
| HinP1I | GCGC | 4 cut(s) | 4, 750, 843, 879 |
| HincII | GTYRAC | 2 cut(s) | 345, 355 |
| HindII | GTYRAC | 2 cut(s) | 345, 355 |
| HinfI | GANTC | 7 cut(s) | 113, 239, 692, 785, 1014, 1028, 1039 |
| HpaII | CCGG | 6 cut(s) | 44, 117, 150, 840, 908, 1090 |
| HphI | GGTGA | 5 cut(s) | 13, 58, 287, 287, 743 |
| Hpy166II | GTNNAC | 4 cut(s) | 278, 345, 355, 696 |
| Hpy188I | TCNGA | 1 cut(s) | 1054 |
| Hpy188III | TCNNGA | 1 cut(s) | 265 |
| Hpy8I | GTNNAC | 4 cut(s) | 278, 345, 355, 696 |
| Hpy99I | CGWCG | 5 cut(s) | 71, 349, 398, 525, 904 |
| HpyAV | CCTTC | 9 cut(s) | 376, 664, 692, 829, 868, 889, 919, 974, 1181 |
| HpyCH4III | ACNGT | 3 cut(s) | 352, 609, 723 |
| HpyCH4IV | ACGT | 1 cut(s) | 138 |
| HpyCH4V | TGCA | 2 cut(s) | 403, 868 |
| HpyF3I | CTNAG | 4 cut(s) | 452, 746, 753, 1032 |
| HpySE526I | ACGT | 1 cut(s) | 138 |
| Hsp92I | GRCGYC | 4 cut(s) | 843, 879, 899, 1058 |
| Hsp92II | CATG | 2 cut(s) | 529, 634 |
| HspAI | GCGC | 4 cut(s) | 4, 750, 843, 879 |
| KasI | GGCGCC | 2 cut(s) | 842, 878 |
| KroI | GCCGGC | 1 cut(s) | 839 |
| KroNI | GCCGGC | 1 cut(s) | 841 |
| LmnI | GCTCC | 7 cut(s) | 37, 190, 448, 595, 622, 759, 1196 |
| Lsp1109I | GCAGC | 5 cut(s) | 319, 387, 754, 763, 880 |
| LweI | GCATC | 3 cut(s) | 535, 894, 1171 |
| MaeI | CTAG | 1 cut(s) | 969 |
| MaeII | ACGT | 1 cut(s) | 138 |
| MaeIII | GTNAC | 1 cut(s) | 19 |
| MbiI | CCGCTC | 2 cut(s) | 586, 598 |
| MboII | GAAGA | 3 cut(s) | 137, 146, 181 |
| MhlI | GDGCHC | 4 cut(s) | 157, 387, 453, 1137 |
| Mly113I | GGCGCC | 2 cut(s) | 843, 879 |
| MlyI | GAGTC | 7 cut(s) | 107, 233, 701, 794, 1008, 1022, 1033 |
| MmeI | TCCRAC | 2 cut(s) | 15, 600 |
| MroNI | GCCGGC | 1 cut(s) | 839 |
| MroXI | GAANNNNTTC | 1 cut(s) | 681 |
| MseI | TTAA | 1 cut(s) | 717 |
| MslI | CAYNNNNRTG | 1 cut(s) | 83 |
| MspA1I | CMGCKG | 6 cut(s) | 11, 310, 688, 776, 1036, 1165 |
| MspI | CCGG | 6 cut(s) | 44, 117, 150, 840, 908, 1090 |
| MspR9I | CCNGG | 7 cut(s) | 151, 236, 497, 593, 1076, 1090, 1091 |
| MvaI | CCWGG | 4 cut(s) | 236, 497, 593, 1076 |
| MvnI | CGCG | 1 cut(s) | 159 |
| NaeI | GCCGGC | 1 cut(s) | 841 |
| NarI | GGCGCC | 2 cut(s) | 843, 879 |
| NciI | CCSGG | 3 cut(s) | 151, 1090, 1091 |
| NgoMIV | GCCGGC | 1 cut(s) | 839 |
| NlaIII | CATG | 2 cut(s) | 529, 634 |
| NmeAIII | GCCGAG | 3 cut(s) | 283, 736, 788 |
| NmuCI | GTSAC | 1 cut(s) | 19 |
| NotI | GCGGCCGC | 1 cut(s) | 771 |
| NspI | RCATGY | 1 cut(s) | 634 |
| OliI | CACNNNNGTG | 1 cut(s) | 83 |
| PceI | AGGCCT | 1 cut(s) | 61 |
| PciI | ACATGT | 1 cut(s) | 630 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 224, 402 |
| PdiI | GCCGGC | 1 cut(s) | 841 |
| PdmI | GAANNNNTTC | 1 cut(s) | 681 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 888 |
| PleI | GAGTC | 7 cut(s) | 107, 233, 700, 793, 1008, 1022, 1033 |
| PluTI | GGCGCC | 2 cut(s) | 846, 882 |
| PpsI | GAGTC | 7 cut(s) | 107, 233, 700, 793, 1008, 1022, 1033 |
| PscI | ACATGT | 1 cut(s) | 630 |
| PshAI | GACNNNNGTC | 1 cut(s) | 350 |
| Psp124BI | GAGCTC | 1 cut(s) | 453 |
| Psp6I | CCWGG | 4 cut(s) | 234, 495, 591, 1074 |
| PspFI | CCCAGC | 3 cut(s) | 7, 310, 1204 |
| PspGI | CCWGG | 4 cut(s) | 234, 495, 591, 1074 |
| PspOMI | GGGCCC | 2 cut(s) | 153, 1133 |
| PspPI | GGNCC | 5 cut(s) | 153, 154, 493, 1133, 1134 |
| PvuII | CAGCTG | 1 cut(s) | 310 |
| RsaI | GTAC | 3 cut(s) | 226, 791, 949 |
| RsaNI | GTAC | 3 cut(s) | 225, 790, 948 |
| RseI | CAYNNNNRTG | 1 cut(s) | 83 |
| SacI | GAGCTC | 1 cut(s) | 453 |
| SalI | GTCGAC | 1 cut(s) | 343 |
| SaqAI | TTAA | 1 cut(s) | 717 |
| Sau96I | GGNCC | 5 cut(s) | 153, 154, 493, 1133, 1134 |
| ScaI | AGTACT | 1 cut(s) | 949 |
| SchI | GAGTC | 7 cut(s) | 107, 233, 701, 794, 1008, 1022, 1033 |
| ScrFI | CCNGG | 7 cut(s) | 151, 236, 497, 593, 1076, 1090, 1091 |
| SduI | GDGCHC | 4 cut(s) | 157, 387, 453, 1137 |
| SfaNI | GCATC | 3 cut(s) | 535, 894, 1171 |
| SfcI | CTRYAG | 1 cut(s) | 473 |
| SfoI | GGCGCC | 2 cut(s) | 844, 880 |
| SgrAI | CRCCGGYG | 1 cut(s) | 43 |
| SmaI | CCCGGG | 1 cut(s) | 1091 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 83 |
| SseBI | AGGCCT | 1 cut(s) | 61 |
| SspDI | GGCGCC | 2 cut(s) | 842, 878 |
| SspMI | CTAG | 1 cut(s) | 969 |
| SstI | GAGCTC | 1 cut(s) | 453 |
| StuI | AGGCCT | 1 cut(s) | 61 |
| StyD4I | CCNGG | 7 cut(s) | 149, 234, 495, 591, 1074, 1088, 1089 |
| StyI | CCWWGG | 1 cut(s) | 660 |
| TaaI | ACNGT | 3 cut(s) | 352, 609, 723 |
| TaiI | ACGT | 1 cut(s) | 141 |
| TaqI | TCGA | 4 cut(s) | 344, 516, 885, 902 |
| TaqII | GACCGA | 1 cut(s) | 839 |
| TatI | WGTACW | 1 cut(s) | 947 |
| Tru1I | TTAA | 1 cut(s) | 717 |
| Tru9I | TTAA | 1 cut(s) | 717 |
| TscAI | CASTG | 1 cut(s) | 825 |
| TseFI | GTSAC | 1 cut(s) | 19 |
| TseI | GCWGC | 5 cut(s) | 307, 400, 767, 776, 868 |
| Tsp45I | GTSAC | 1 cut(s) | 19 |
| TspGWI | ACGGA | 1 cut(s) | 382 |
| TspMI | CCCGGG | 1 cut(s) | 1089 |
| TspRI | CASTG | 1 cut(s) | 825 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 888 |
| XceI | RCATGY | 1 cut(s) | 634 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 31 |
| XmaI | CCCGGG | 1 cut(s) | 1089 |
| XmiI | GTMKAC | 2 cut(s) | 344, 695 |
| XmnI | GAANNNNTTC | 1 cut(s) | 681 |
| XspI | CTAG | 1 cut(s) | 969 |
| ZrmI | AGTACT | 1 cut(s) | 949 |