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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 333 |
| AccB1I | GGYRCC | 1 cut(s) | 560 |
| AccBSI | CCGCTC | 1 cut(s) | 502 |
| AccII | CGCG | 4 cut(s) | 16, 192, 363, 420 |
| AccIII | TCCGGA | 1 cut(s) | 230 |
| AcoI | YGGCCR | 1 cut(s) | 358 |
| AcvI | CACGTG | 1 cut(s) | 526 |
| AcyI | GRCGYC | 2 cut(s) | 195, 561 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 60, 111, 378, 379, 492 |
| AleI | CACNNNNGTG | 1 cut(s) | 545 |
| AluBI | AGCT | 1 cut(s) | 209 |
| AluI | AGCT | 1 cut(s) | 209 |
| Alw21I | GWGCWC | 1 cut(s) | 531 |
| Alw26I | GTCTC | 2 cut(s) | 16, 228 |
| Ama87I | CYCGRG | 1 cut(s) | 20 |
| Aor13HI | TCCGGA | 1 cut(s) | 230 |
| AoxI | GGCC | 2 cut(s) | 358, 455 |
| ApeKI | GCWGC | 1 cut(s) | 50 |
| AspLEI | GCGC | 5 cut(s) | 334, 365, 414, 422, 563 |
| AspS9I | GGNCC | 3 cut(s) | 214, 455, 477 |
| AsuC2I | CCSGG | 1 cut(s) | 493 |
| AsuHPI | GGTGA | 2 cut(s) | 287, 409 |
| AsuNHI | GCTAGC | 1 cut(s) | 76 |
| AvaI | CYCGRG | 1 cut(s) | 20 |
| AvaII | GGWCC | 2 cut(s) | 214, 477 |
| BanI | GGYRCC | 1 cut(s) | 560 |
| BanII | GRGCYC | 2 cut(s) | 303, 441 |
| BbrPI | CACGTG | 1 cut(s) | 526 |
| Bbv12I | GWGCWC | 1 cut(s) | 531 |
| BbvI | GCAGC | 1 cut(s) | 37 |
| BccI | CCATC | 1 cut(s) | 490 |
| BceAI | ACGGC | 2 cut(s) | 350, 373 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 182, 216, 508, 542 |
| BcnI | CCSGG | 1 cut(s) | 493 |
| BcoDI | GTCTC | 2 cut(s) | 16, 228 |
| BfaI | CTAG | 2 cut(s) | 30, 77 |
| BfoI | RGCGCY | 1 cut(s) | 564 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 144 |
| BlpI | GCTNAGC | 1 cut(s) | 551 |
| Bme1390I | CCNGG | 1 cut(s) | 493 |
| Bme18I | GGWCC | 2 cut(s) | 214, 477 |
| BmeT110I | CYCGRG | 1 cut(s) | 20 |
| BmgT120I | GGNCC | 3 cut(s) | 214, 455, 477 |
| BmiI | GGNNCC | 5 cut(s) | 103, 438, 478, 516, 562 |
| BmrFI | CCNGG | 1 cut(s) | 493 |
| BmsI | GCATC | 1 cut(s) | 343 |
| BmtI | GCTAGC | 1 cut(s) | 80 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 551 |
| BpuMI | CCSGG | 1 cut(s) | 493 |
| BsaAI | YACGTR | 1 cut(s) | 526 |
| BsaHI | GRCGYC | 2 cut(s) | 195, 561 |
| BsaJI | CCNNGG | 3 cut(s) | 346, 458, 518 |
| BsaWI | WCCGGW | 2 cut(s) | 230, 314 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 225, 255 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 60, 111, 378, 379, 492 |
| Bse118I | RCCGGY | 2 cut(s) | 173, 290 |
| Bse3DI | GCAATG | 1 cut(s) | 358 |
| BseAI | TCCGGA | 1 cut(s) | 230 |
| BseDI | CCNNGG | 3 cut(s) | 346, 458, 518 |
| BseGI | GGATG | 1 cut(s) | 501 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 60, 111, 378, 379, 492 |
| BseMI | GCAATG | 1 cut(s) | 358 |
| BseMII | CTCAG | 1 cut(s) | 542 |
| BseRI | GAGGAG | 1 cut(s) | 142 |
| BseX3I | CGGCCG | 1 cut(s) | 358 |
| BseXI | GCAGC | 1 cut(s) | 37 |
| Bsh1236I | CGCG | 4 cut(s) | 16, 192, 363, 420 |
| Bsh1285I | CGRYCG | 2 cut(s) | 361, 506 |
| BshFI | GGCC | 2 cut(s) | 360, 457 |
| BshNI | GGYRCC | 1 cut(s) | 560 |
| BsiEI | CGRYCG | 2 cut(s) | 361, 506 |
| BsiHKAI | GWGCWC | 1 cut(s) | 531 |
| BsiHKCI | CYCGRG | 1 cut(s) | 20 |
| BsiSI | CCGG | 5 cut(s) | 174, 231, 291, 315, 492 |
| BslFI | GGGAC | 2 cut(s) | 3, 490 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 60, 111, 378, 379, 492 |
| BsmAI | GTCTC | 2 cut(s) | 16, 228 |
| BsmBI | CGTCTC | 1 cut(s) | 228 |
| BsmFI | GGGAC | 2 cut(s) | 3, 490 |
| BsmI | GAATGC | 1 cut(s) | 140 |
| BsnI | GGCC | 2 cut(s) | 360, 457 |
| BsoBI | CYCGRG | 1 cut(s) | 20 |
| Bsp1286I | GDGCHC | 3 cut(s) | 303, 441, 531 |
| Bsp13I | TCCGGA | 1 cut(s) | 230 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 551 |
| BspANI | GGCC | 2 cut(s) | 360, 457 |
| BspCNI | CTCAG | 1 cut(s) | 543 |
| BspEI | TCCGGA | 1 cut(s) | 230 |
| BspFNI | CGCG | 4 cut(s) | 16, 192, 363, 420 |
| BspLI | GGNNCC | 5 cut(s) | 103, 438, 478, 516, 562 |
| BspOI | GCTAGC | 1 cut(s) | 80 |
| BspT107I | GGYRCC | 1 cut(s) | 560 |
| BsrBI | CCGCTC | 1 cut(s) | 502 |
| BsrDI | GCAATG | 1 cut(s) | 358 |
| BsrFI | RCCGGY | 2 cut(s) | 173, 290 |
| BssAI | RCCGGY | 2 cut(s) | 173, 290 |
| BssECI | CCNNGG | 3 cut(s) | 346, 458, 518 |
| BssNI | GRCGYC | 2 cut(s) | 195, 561 |
| BssT1I | CCWWGG | 1 cut(s) | 346 |
| Bst4CI | ACNGT | 2 cut(s) | 218, 449 |
| BstACI | GRCGYC | 2 cut(s) | 195, 561 |
| BstBAI | YACGTR | 1 cut(s) | 526 |
| BstC8I | GCNNGC | 4 cut(s) | 78, 393, 441, 531 |
| BstDEI | CTNAG | 1 cut(s) | 551 |
| BstF5I | GGATG | 1 cut(s) | 501 |
| BstFNI | CGCG | 4 cut(s) | 16, 192, 363, 420 |
| BstH2I | RGCGCY | 1 cut(s) | 564 |
| BstHHI | GCGC | 5 cut(s) | 334, 365, 414, 422, 563 |
| BstMAI | GTCTC | 2 cut(s) | 16, 228 |
| BstMCI | CGRYCG | 2 cut(s) | 361, 506 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 41, 50, 70, 144, 329, 357, 383, 392 |
| BstSCI | CCNGG | 1 cut(s) | 491 |
| BstUI | CGCG | 4 cut(s) | 16, 192, 363, 420 |
| BstV1I | GCAGC | 1 cut(s) | 37 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 211 |
| BstZI | CGGCCG | 1 cut(s) | 358 |
| BsuRI | GGCC | 2 cut(s) | 360, 457 |
| BtsCI | GGATG | 1 cut(s) | 501 |
| Cac8I | GCNNGC | 4 cut(s) | 78, 393, 441, 531 |
| CfoI | GCGC | 5 cut(s) | 334, 365, 414, 422, 563 |
| Cfr10I | RCCGGY | 2 cut(s) | 173, 290 |
| Cfr13I | GGNCC | 3 cut(s) | 214, 455, 477 |
| CseI | GACGC | 2 cut(s) | 5, 203 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 433, 468 |
| CviAII | CATG | 1 cut(s) | 65 |
| DdeI | CTNAG | 1 cut(s) | 551 |
| DinI | GGCGCC | 1 cut(s) | 562 |
| EaeI | YGGCCR | 1 cut(s) | 358 |
| EagI | CGGCCG | 1 cut(s) | 358 |
| EciI | GGCGGA | 1 cut(s) | 94 |
| EclXI | CGGCCG | 1 cut(s) | 358 |
| Eco130I | CCWWGG | 1 cut(s) | 346 |
| Eco24I | GRGCYC | 2 cut(s) | 303, 441 |
| Eco47I | GGWCC | 2 cut(s) | 214, 477 |
| Eco52I | CGGCCG | 1 cut(s) | 358 |
| Eco72I | CACGTG | 1 cut(s) | 526 |
| Eco88I | CYCGRG | 1 cut(s) | 20 |
| EcoT14I | CCWWGG | 1 cut(s) | 346 |
| EcoT22I | ATGCAT | 1 cut(s) | 248 |
| EcoT38I | GRGCYC | 2 cut(s) | 303, 441 |
| EgeI | GGCGCC | 1 cut(s) | 562 |
| EheI | GGCGCC | 1 cut(s) | 562 |
| ErhI | CCWWGG | 1 cut(s) | 346 |
| Esp3I | CGTCTC | 1 cut(s) | 228 |
| FaeI | CATG | 1 cut(s) | 68 |
| FaiI | YATR | 5 cut(s) | 66, 212, 244, 248, 330 |
| FaqI | GGGAC | 2 cut(s) | 3, 490 |
| FatI | CATG | 1 cut(s) | 64 |
| FauI | CCCGC | 3 cut(s) | 370, 384, 448 |
| FokI | GGATG | 1 cut(s) | 508 |
| FriOI | GRGCYC | 2 cut(s) | 303, 441 |
| FspAI | RTGCGCAY | 1 cut(s) | 333 |
| FspBI | CTAG | 2 cut(s) | 30, 77 |
| FspI | TGCGCA | 1 cut(s) | 333 |
| GlaI | GCGC | 5 cut(s) | 333, 364, 413, 421, 562 |
| HaeII | RGCGCY | 1 cut(s) | 564 |
| HaeIII | GGCC | 2 cut(s) | 360, 457 |
| HapII | CCGG | 5 cut(s) | 174, 231, 291, 315, 492 |
| HgaI | GACGC | 2 cut(s) | 5, 203 |
| HhaI | GCGC | 5 cut(s) | 334, 365, 414, 422, 563 |
| Hin1I | GRCGYC | 2 cut(s) | 195, 561 |
| Hin1II | CATG | 1 cut(s) | 68 |
| Hin6I | GCGC | 5 cut(s) | 332, 363, 412, 420, 561 |
| HinP1I | GCGC | 5 cut(s) | 332, 363, 412, 420, 561 |
| HinfI | GANTC | 2 cut(s) | 141, 574 |
| HpaII | CCGG | 5 cut(s) | 174, 231, 291, 315, 492 |
| HphI | GGTGA | 2 cut(s) | 287, 409 |
| Hpy166II | GTNNAC | 1 cut(s) | 278 |
| Hpy188I | TCNGA | 2 cut(s) | 161, 462 |
| Hpy188III | TCNNGA | 2 cut(s) | 20, 231 |
| Hpy8I | GTNNAC | 1 cut(s) | 278 |
| Hpy99I | CGWCG | 5 cut(s) | 113, 165, 197, 371, 453 |
| HpyAV | CCTTC | 3 cut(s) | 396, 460, 551 |
| HpyCH4III | ACNGT | 2 cut(s) | 218, 449 |
| HpyCH4IV | ACGT | 1 cut(s) | 525 |
| HpyCH4V | TGCA | 1 cut(s) | 246 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 41, 50, 70, 144, 329, 357, 383, 392 |
| HpyF3I | CTNAG | 1 cut(s) | 551 |
| HpySE526I | ACGT | 1 cut(s) | 525 |
| Hsp92I | GRCGYC | 2 cut(s) | 195, 561 |
| Hsp92II | CATG | 1 cut(s) | 68 |
| HspAI | GCGC | 5 cut(s) | 332, 363, 412, 420, 561 |
| KasI | GGCGCC | 1 cut(s) | 560 |
| Kpn2I | TCCGGA | 1 cut(s) | 230 |
| LmnI | GCTCC | 3 cut(s) | 436, 499, 514 |
| LpnPI | CCDG | 7 cut(s) | 21, 187, 244, 304, 328, 505, 519 |
| Lsp1109I | GCAGC | 1 cut(s) | 37 |
| LweI | GCATC | 1 cut(s) | 343 |
| MaeI | CTAG | 2 cut(s) | 30, 77 |
| MaeII | ACGT | 1 cut(s) | 525 |
| MaeIII | GTNAC | 1 cut(s) | 176 |
| MbiI | CCGCTC | 1 cut(s) | 502 |
| MhlI | GDGCHC | 3 cut(s) | 303, 441, 531 |
| MluCI | AATT | 1 cut(s) | 225 |
| Mly113I | GGCGCC | 1 cut(s) | 561 |
| MlyI | GAGTC | 2 cut(s) | 150, 568 |
| MmeI | TCCRAC | 1 cut(s) | 184 |
| MnlI | CCTC | 5 cut(s) | 120, 426, 456, 468, 513 |
| Mph1103I | ATGCAT | 1 cut(s) | 248 |
| MroI | TCCGGA | 1 cut(s) | 230 |
| MslI | CAYNNNNRTG | 1 cut(s) | 545 |
| MspA1I | CMGCKG | 1 cut(s) | 50 |
| MspI | CCGG | 5 cut(s) | 174, 231, 291, 315, 492 |
| MspR9I | CCNGG | 1 cut(s) | 493 |
| Mva1269I | GAATGC | 1 cut(s) | 140 |
| MvnI | CGCG | 4 cut(s) | 16, 192, 363, 420 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 41, 50, 70, 144, 329, 357, 383, 392 |
| NarI | GGCGCC | 1 cut(s) | 561 |
| NciI | CCSGG | 1 cut(s) | 493 |
| NheI | GCTAGC | 1 cut(s) | 76 |
| NlaIII | CATG | 1 cut(s) | 68 |
| NlaIV | GGNNCC | 5 cut(s) | 103, 438, 478, 516, 562 |
| NmeAIII | GCCGAG | 4 cut(s) | 164, 242, 543, 556 |
| NsbI | TGCGCA | 1 cut(s) | 333 |
| NsiI | ATGCAT | 1 cut(s) | 248 |
| OliI | CACNNNNGTG | 1 cut(s) | 545 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 13, 363 |
| PctI | GAATGC | 1 cut(s) | 140 |
| PleI | GAGTC | 2 cut(s) | 149, 568 |
| PluTI | GGCGCC | 1 cut(s) | 564 |
| PmaCI | CACGTG | 1 cut(s) | 526 |
| PmlI | CACGTG | 1 cut(s) | 526 |
| PpsI | GAGTC | 2 cut(s) | 149, 568 |
| Ppu21I | YACGTR | 1 cut(s) | 526 |
| PspCI | CACGTG | 1 cut(s) | 526 |
| PspN4I | GGNNCC | 5 cut(s) | 103, 438, 478, 516, 562 |
| PspPI | GGNCC | 3 cut(s) | 214, 455, 477 |
| RseI | CAYNNNNRTG | 1 cut(s) | 545 |
| Sau96I | GGNCC | 3 cut(s) | 214, 455, 477 |
| SchI | GAGTC | 2 cut(s) | 150, 568 |
| ScrFI | CCNGG | 1 cut(s) | 493 |
| SduI | GDGCHC | 3 cut(s) | 303, 441, 531 |
| SetI | ASST | 4 cut(s) | 211, 329, 348, 528 |
| SfaNI | GCATC | 1 cut(s) | 343 |
| SfoI | GGCGCC | 1 cut(s) | 562 |
| SinI | GGWCC | 2 cut(s) | 214, 477 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 545 |
| Sse9I | AATT | 1 cut(s) | 225 |
| SspDI | GGCGCC | 1 cut(s) | 560 |
| SspMI | CTAG | 2 cut(s) | 30, 77 |
| StyD4I | CCNGG | 1 cut(s) | 491 |
| StyI | CCWWGG | 1 cut(s) | 346 |
| TaaI | ACNGT | 2 cut(s) | 218, 449 |
| TaiI | ACGT | 1 cut(s) | 528 |
| TaqI | TCGA | 1 cut(s) | 307 |
| TasI | AATT | 1 cut(s) | 225 |
| TseI | GCWGC | 1 cut(s) | 50 |
| VpaK11BI | GGWCC | 2 cut(s) | 214, 477 |
| XspI | CTAG | 2 cut(s) | 30, 77 |
| Zsp2I | ATGCAT | 1 cut(s) | 248 |