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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 317, 446 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 553 |
| AccBSI | CCGCTC | 3 cut(s) | 61, 73, 453 |
| AccII | CGCG | 2 cut(s) | 240, 594 |
| AclWI | GGATC | 2 cut(s) | 148, 604 |
| AcoI | YGGCCR | 6 cut(s) | 45, 129, 183, 246, 555, 589 |
| AcuI | CTGAAG | 1 cut(s) | 143 |
| AcyI | GRCGYC | 2 cut(s) | 354, 374 |
| AfaI | GTAC | 1 cut(s) | 565 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 60, 244, 419, 436, 517, 531, 553 |
| AgsI | TTSAA | 1 cut(s) | 268 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 579 |
| AjnI | CCWGG | 2 cut(s) | 219, 552 |
| AluBI | AGCT | 1 cut(s) | 398 |
| AluI | AGCT | 1 cut(s) | 398 |
| Alw26I | GTCTC | 1 cut(s) | 566 |
| AlwI | GGATC | 2 cut(s) | 148, 604 |
| Ama87I | CYCGRG | 1 cut(s) | 454 |
| AoxI | GGCC | 9 cut(s) | 9, 45, 129, 183, 246, 312, 544, 555, 589 |
| ApeKI | GCWGC | 5 cut(s) | 23, 115, 242, 251, 612 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 213 |
| AspLEI | GCGC | 2 cut(s) | 242, 295 |
| AspS9I | GGNCC | 2 cut(s) | 64, 544 |
| AsuHPI | GGTGA | 1 cut(s) | 218 |
| AvaI | CYCGRG | 1 cut(s) | 454 |
| AvaII | GGWCC | 1 cut(s) | 64 |
| BaeGI | GKGCMC | 2 cut(s) | 322, 451 |
| BalI | TGGCCA | 1 cut(s) | 557 |
| BanI | GGYRCC | 2 cut(s) | 317, 446 |
| BbvCI | CCTCAGC | 1 cut(s) | 228 |
| BbvI | GCAGC | 5 cut(s) | 35, 102, 229, 238, 624 |
| BccI | CCATC | 1 cut(s) | 437 |
| BceAI | ACGGC | 2 cut(s) | 32, 212 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 36 |
| BciT130I | CCWGG | 2 cut(s) | 221, 554 |
| BclI | TGATCA | 1 cut(s) | 79 |
| BcoDI | GTCTC | 1 cut(s) | 566 |
| BfaI | CTAG | 4 cut(s) | 68, 177, 323, 585 |
| BfmI | CTRYAG | 1 cut(s) | 341 |
| BfoI | RGCGCY | 1 cut(s) | 296 |
| Bme1390I | CCNGG | 2 cut(s) | 221, 554 |
| Bme18I | GGWCC | 1 cut(s) | 64 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 579 |
| BmeT110I | CYCGRG | 1 cut(s) | 454 |
| BmgT120I | GGNCC | 2 cut(s) | 64, 544 |
| BmiI | GGNNCC | 3 cut(s) | 65, 319, 448 |
| BmrFI | CCNGG | 2 cut(s) | 221, 554 |
| BmrI | ACTGGG | 1 cut(s) | 505 |
| BmsI | GCATC | 5 cut(s) | 10, 19, 327, 394, 637 |
| BmuI | ACTGGG | 1 cut(s) | 505 |
| BpmI | CTGGAG | 1 cut(s) | 221 |
| Bpu10I | CCTNAGC | 2 cut(s) | 228, 399 |
| BsaHI | GRCGYC | 2 cut(s) | 354, 374 |
| BsaI | GGTCTC | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 4 cut(s) | 186, 220, 552, 592 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 60, 244, 419, 436, 517, 531, 553 |
| Bse118I | RCCGGY | 1 cut(s) | 314 |
| Bse1I | ACTGG | 1 cut(s) | 511 |
| BseBI | CCWGG | 2 cut(s) | 221, 554 |
| BseDI | CCNNGG | 4 cut(s) | 186, 220, 552, 592 |
| BseGI | GGATG | 3 cut(s) | 409, 493, 619 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 60, 244, 419, 436, 517, 531, 553 |
| BseMII | CTCAG | 2 cut(s) | 219, 449 |
| BseNI | ACTGG | 1 cut(s) | 511 |
| BseSI | GKGCMC | 2 cut(s) | 322, 451 |
| BseX3I | CGGCCG | 1 cut(s) | 246 |
| BseXI | GCAGC | 5 cut(s) | 35, 102, 229, 238, 624 |
| BseYI | CCCAGC | 2 cut(s) | 495, 530 |
| Bsh1236I | CGCG | 2 cut(s) | 240, 594 |
| Bsh1285I | CGRYCG | 2 cut(s) | 249, 387 |
| BshFI | GGCC | 9 cut(s) | 11, 47, 131, 185, 248, 314, 546, 557, 591 |
| BshNI | GGYRCC | 2 cut(s) | 317, 446 |
| BsiEI | CGRYCG | 2 cut(s) | 249, 387 |
| BsiHKCI | CYCGRG | 1 cut(s) | 454 |
| BsiSI | CCGG | 1 cut(s) | 315 |
| BslFI | GGGAC | 3 cut(s) | 77, 94, 508 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 60, 244, 419, 436, 517, 531, 553 |
| BsmAI | GTCTC | 1 cut(s) | 566 |
| BsmFI | GGGAC | 3 cut(s) | 77, 94, 508 |
| BsnI | GGCC | 9 cut(s) | 11, 47, 131, 185, 248, 314, 546, 557, 591 |
| Bso31I | GGTCTC | 1 cut(s) | 566 |
| BsoBI | CYCGRG | 1 cut(s) | 454 |
| Bsp1286I | GDGCHC | 2 cut(s) | 322, 451 |
| Bsp143I | GATC | 4 cut(s) | 79, 121, 153, 596 |
| BspANI | GGCC | 9 cut(s) | 11, 47, 131, 185, 248, 314, 546, 557, 591 |
| BspCNI | CTCAG | 2 cut(s) | 220, 448 |
| BspFNI | CGCG | 2 cut(s) | 240, 594 |
| BspLI | GGNNCC | 3 cut(s) | 65, 319, 448 |
| BspPI | GGATC | 2 cut(s) | 148, 604 |
| BspT107I | GGYRCC | 2 cut(s) | 317, 446 |
| BspTNI | GGTCTC | 1 cut(s) | 566 |
| BsrBI | CCGCTC | 3 cut(s) | 61, 73, 453 |
| BsrFI | RCCGGY | 1 cut(s) | 314 |
| BsrI | ACTGG | 1 cut(s) | 511 |
| BssAI | RCCGGY | 1 cut(s) | 314 |
| BssECI | CCNNGG | 4 cut(s) | 186, 220, 552, 592 |
| BssMI | GATC | 4 cut(s) | 79, 121, 153, 596 |
| BssNI | GRCGYC | 2 cut(s) | 354, 374 |
| Bst2UI | CCWGG | 2 cut(s) | 221, 554 |
| Bst4CI | ACNGT | 1 cut(s) | 17 |
| BstACI | GRCGYC | 2 cut(s) | 354, 374 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 29 |
| BstC8I | GCNNGC | 6 cut(s) | 183, 396, 414, 451, 544, 633 |
| BstDEI | CTNAG | 3 cut(s) | 228, 399, 435 |
| BstDSI | CCRYGG | 1 cut(s) | 592 |
| BstF5I | GGATG | 3 cut(s) | 409, 493, 619 |
| BstFNI | CGCG | 2 cut(s) | 240, 594 |
| BstH2I | RGCGCY | 1 cut(s) | 296 |
| BstHHI | GCGC | 2 cut(s) | 242, 295 |
| BstKTI | GATC | 4 cut(s) | 82, 124, 156, 599 |
| BstMAI | GTCTC | 1 cut(s) | 566 |
| BstMBI | GATC | 4 cut(s) | 79, 121, 153, 596 |
| BstMCI | CGRYCG | 2 cut(s) | 249, 387 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 29, 182, 248, 251, 404, 413, 671 |
| BstNI | CCWGG | 2 cut(s) | 221, 554 |
| BstNSI | RCATGY | 1 cut(s) | 635 |
| BstSCI | CCNGG | 2 cut(s) | 219, 552 |
| BstSFI | CTRYAG | 1 cut(s) | 341 |
| BstSLI | GKGCMC | 2 cut(s) | 322, 451 |
| BstUI | CGCG | 2 cut(s) | 240, 594 |
| BstV1I | GCAGC | 5 cut(s) | 35, 102, 229, 238, 624 |
| BstX2I | RGATCY | 2 cut(s) | 153, 596 |
| BstYI | RGATCY | 2 cut(s) | 153, 596 |
| BstZI | CGGCCG | 1 cut(s) | 246 |
| BsuRI | GGCC | 9 cut(s) | 11, 47, 131, 185, 248, 314, 546, 557, 591 |
| BtgI | CCRYGG | 1 cut(s) | 592 |
| BtsCI | GGATG | 3 cut(s) | 409, 493, 619 |
| Cac8I | GCNNGC | 6 cut(s) | 183, 396, 414, 451, 544, 633 |
| CciNI | GCGGCCGC | 1 cut(s) | 246 |
| CfoI | GCGC | 2 cut(s) | 242, 295 |
| Cfr10I | RCCGGY | 1 cut(s) | 314 |
| Cfr13I | GGNCC | 2 cut(s) | 64, 544 |
| Cfr42I | CCGCGG | 1 cut(s) | 595 |
| CseI | GACGC | 2 cut(s) | 343, 363 |
| Csp6I | GTAC | 1 cut(s) | 564 |
| CviAII | CATG | 3 cut(s) | 35, 379, 632 |
| CviQI | GTAC | 1 cut(s) | 564 |
| DdeI | CTNAG | 3 cut(s) | 228, 399, 435 |
| DpnI | GATC | 4 cut(s) | 81, 123, 155, 598 |
| DpnII | GATC | 4 cut(s) | 79, 121, 153, 596 |
| DriI | GACNNNNNGTC | 1 cut(s) | 579 |
| EaeI | YGGCCR | 6 cut(s) | 45, 129, 183, 246, 555, 589 |
| EagI | CGGCCG | 1 cut(s) | 246 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 579 |
| EciI | GGCGGA | 1 cut(s) | 612 |
| EclXI | CGGCCG | 1 cut(s) | 246 |
| Eco31I | GGTCTC | 1 cut(s) | 566 |
| Eco47I | GGWCC | 1 cut(s) | 64 |
| Eco52I | CGGCCG | 1 cut(s) | 246 |
| Eco57I | CTGAAG | 1 cut(s) | 143 |
| Eco88I | CYCGRG | 1 cut(s) | 454 |
| EcoO109I | RGGNCCY | 1 cut(s) | 64 |
| EcoRII | CCWGG | 2 cut(s) | 219, 552 |
| FaeI | CATG | 3 cut(s) | 38, 382, 635 |
| FaiI | YATR | 5 cut(s) | 36, 285, 380, 549, 633 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 460, 492 |
| FaqI | GGGAC | 3 cut(s) | 77, 94, 508 |
| FatI | CATG | 3 cut(s) | 34, 378, 631 |
| FauI | CCCGC | 4 cut(s) | 54, 458, 535, 679 |
| FbaI | TGATCA | 1 cut(s) | 79 |
| FokI | GGATG | 3 cut(s) | 416, 500, 606 |
| FspBI | CTAG | 4 cut(s) | 68, 177, 323, 585 |
| GlaI | GCGC | 2 cut(s) | 241, 294 |
| GsaI | CCCAGC | 2 cut(s) | 499, 534 |
| GsuI | CTGGAG | 1 cut(s) | 221 |
| HaeII | RGCGCY | 1 cut(s) | 296 |
| HaeIII | GGCC | 9 cut(s) | 11, 47, 131, 185, 248, 314, 546, 557, 591 |
| HapII | CCGG | 1 cut(s) | 315 |
| HgaI | GACGC | 2 cut(s) | 343, 363 |
| HhaI | GCGC | 2 cut(s) | 242, 295 |
| Hin1I | GRCGYC | 2 cut(s) | 354, 374 |
| Hin1II | CATG | 3 cut(s) | 38, 382, 635 |
| Hin6I | GCGC | 2 cut(s) | 240, 293 |
| HinP1I | GCGC | 2 cut(s) | 240, 293 |
| HinfI | GANTC | 4 cut(s) | 167, 260, 491, 502 |
| HpaII | CCGG | 1 cut(s) | 315 |
| HphI | GGTGA | 1 cut(s) | 218 |
| Hpy188I | TCNGA | 3 cut(s) | 483, 517, 601 |
| Hpy99I | CGWCG | 2 cut(s) | 53, 487 |
| HpyAV | CCTTC | 6 cut(s) | 167, 296, 304, 364, 632, 647 |
| HpyCH4III | ACNGT | 1 cut(s) | 17 |
| HpyCH4V | TGCA | 2 cut(s) | 23, 118 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 29, 182, 248, 251, 404, 413, 671 |
| HpyF3I | CTNAG | 3 cut(s) | 228, 399, 435 |
| Hsp92I | GRCGYC | 2 cut(s) | 354, 374 |
| Hsp92II | CATG | 3 cut(s) | 38, 382, 635 |
| HspAI | GCGC | 2 cut(s) | 240, 293 |
| Ksp22I | TGATCA | 1 cut(s) | 79 |
| KspI | CCGCGG | 1 cut(s) | 595 |
| Kzo9I | GATC | 4 cut(s) | 79, 121, 153, 596 |
| Lsp1109I | GCAGC | 5 cut(s) | 35, 102, 229, 238, 624 |
| LweI | GCATC | 5 cut(s) | 10, 19, 327, 394, 637 |
| MaeI | CTAG | 4 cut(s) | 68, 177, 323, 585 |
| MaeIII | GTNAC | 1 cut(s) | 472 |
| MalI | GATC | 4 cut(s) | 81, 123, 155, 598 |
| MbiI | CCGCTC | 3 cut(s) | 61, 73, 453 |
| MboI | GATC | 4 cut(s) | 79, 121, 153, 596 |
| MflI | RGATCY | 2 cut(s) | 153, 596 |
| MhlI | GDGCHC | 2 cut(s) | 322, 451 |
| MlsI | TGGCCA | 1 cut(s) | 557 |
| MluCI | AATT | 1 cut(s) | 83 |
| MluNI | TGGCCA | 1 cut(s) | 557 |
| MlyI | GAGTC | 4 cut(s) | 176, 269, 485, 496 |
| MmeI | TCCRAC | 2 cut(s) | 495, 506 |
| MnlI | CCTC | 5 cut(s) | 181, 196, 223, 442, 511 |
| Mox20I | TGGCCA | 1 cut(s) | 557 |
| MroXI | GAANNNNTTC | 1 cut(s) | 213 |
| MscI | TGGCCA | 1 cut(s) | 557 |
| MseI | TTAA | 1 cut(s) | 192 |
| Msp20I | TGGCCA | 1 cut(s) | 557 |
| MspA1I | CMGCKG | 2 cut(s) | 251, 594 |
| MspI | CCGG | 1 cut(s) | 315 |
| MspR9I | CCNGG | 2 cut(s) | 221, 554 |
| MvaI | CCWGG | 2 cut(s) | 221, 554 |
| MvnI | CGCG | 2 cut(s) | 240, 594 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 29, 182, 248, 251, 404, 413, 671 |
| NdeII | GATC | 4 cut(s) | 79, 121, 153, 596 |
| NlaIII | CATG | 3 cut(s) | 38, 382, 635 |
| NlaIV | GGNNCC | 3 cut(s) | 65, 319, 448 |
| NmeAIII | GCCGAG | 1 cut(s) | 211 |
| NmuCI | GTSAC | 1 cut(s) | 472 |
| NotI | GCGGCCGC | 1 cut(s) | 246 |
| NspI | RCATGY | 1 cut(s) | 635 |
| PaeI | GCATGC | 1 cut(s) | 635 |
| PdmI | GAANNNNTTC | 1 cut(s) | 213 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 553 |
| PleI | GAGTC | 4 cut(s) | 175, 268, 485, 496 |
| PpsI | GAGTC | 4 cut(s) | 175, 268, 485, 496 |
| PpuMI | RGGWCCY | 1 cut(s) | 64 |
| Psp5II | RGGWCCY | 1 cut(s) | 64 |
| Psp6I | CCWGG | 2 cut(s) | 219, 552 |
| PspFI | CCCAGC | 2 cut(s) | 495, 530 |
| PspGI | CCWGG | 2 cut(s) | 219, 552 |
| PspN4I | GGNNCC | 3 cut(s) | 65, 319, 448 |
| PspPI | GGNCC | 2 cut(s) | 64, 544 |
| PspPPI | RGGWCCY | 1 cut(s) | 64 |
| PsuI | RGATCY | 2 cut(s) | 153, 596 |
| RsaI | GTAC | 1 cut(s) | 565 |
| RsaNI | GTAC | 1 cut(s) | 564 |
| SacII | CCGCGG | 1 cut(s) | 595 |
| SaqAI | TTAA | 1 cut(s) | 192 |
| Sau3AI | GATC | 4 cut(s) | 79, 121, 153, 596 |
| Sau96I | GGNCC | 2 cut(s) | 64, 544 |
| SchI | GAGTC | 4 cut(s) | 176, 269, 485, 496 |
| ScrFI | CCNGG | 2 cut(s) | 221, 554 |
| SduI | GDGCHC | 2 cut(s) | 322, 451 |
| SetI | ASST | 7 cut(s) | 69, 150, 192, 400, 441, 522, 643 |
| SfaNI | GCATC | 5 cut(s) | 10, 19, 327, 394, 637 |
| SfcI | CTRYAG | 1 cut(s) | 341 |
| Sfr303I | CCGCGG | 1 cut(s) | 595 |
| SgrBI | CCGCGG | 1 cut(s) | 595 |
| SinI | GGWCC | 1 cut(s) | 64 |
| SphI | GCATGC | 1 cut(s) | 635 |
| Sse9I | AATT | 1 cut(s) | 83 |
| SspMI | CTAG | 4 cut(s) | 68, 177, 323, 585 |
| StyD4I | CCNGG | 2 cut(s) | 219, 552 |
| TaaI | ACNGT | 1 cut(s) | 17 |
| TaqII | GACCGA | 2 cut(s) | 314, 373 |
| TasI | AATT | 1 cut(s) | 83 |
| TauI | GCSGC | 7 cut(s) | 134, 176, 240, 248, 251, 394, 594 |
| Tru1I | TTAA | 1 cut(s) | 192 |
| Tru9I | TTAA | 1 cut(s) | 192 |
| TseFI | GTSAC | 1 cut(s) | 472 |
| TseI | GCWGC | 5 cut(s) | 23, 115, 242, 251, 612 |
| Tsp45I | GTSAC | 1 cut(s) | 472 |
| TspGWI | ACGGA | 1 cut(s) | 500 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 553 |
| VpaK11BI | GGWCC | 1 cut(s) | 64 |
| XceI | RCATGY | 1 cut(s) | 635 |
| XmnI | GAANNNNTTC | 1 cut(s) | 213 |
| XspI | CTAG | 4 cut(s) | 68, 177, 323, 585 |