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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 200 |
| Acc36I | ACCTGC | 1 cut(s) | 200 |
| AccB1I | GGYRCC | 3 cut(s) | 212, 248, 344 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AccII | CGCG | 1 cut(s) | 135 |
| AcoI | YGGCCR | 2 cut(s) | 24, 141 |
| AcuI | CTGAAG | 1 cut(s) | 38 |
| AfaI | GTAC | 2 cut(s) | 161, 310 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 12, 13, 58, 139, 258, 334 |
| AgsI | TTSAA | 2 cut(s) | 47, 341 |
| AjnI | CCWGG | 1 cut(s) | 328 |
| AluBI | AGCT | 1 cut(s) | 293 |
| AluI | AGCT | 1 cut(s) | 293 |
| AoxI | GGCC | 2 cut(s) | 24, 141 |
| ApeKI | GCWGC | 4 cut(s) | 10, 137, 200, 235 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 51 |
| AspLEI | GCGC | 2 cut(s) | 122, 137 |
| AsuC2I | CCSGG | 1 cut(s) | 380 |
| AsuHPI | GGTGA | 2 cut(s) | 97, 113 |
| BanI | GGYRCC | 3 cut(s) | 212, 248, 344 |
| BbvCI | CCTCAGC | 1 cut(s) | 81 |
| BbvI | GCAGC | 3 cut(s) | 124, 212, 222 |
| BccI | CCATC | 1 cut(s) | 260 |
| BceAI | ACGGC | 1 cut(s) | 134 |
| BciT130I | CCWGG | 1 cut(s) | 330 |
| BcnI | CCSGG | 1 cut(s) | 380 |
| BfaI | CTAG | 2 cut(s) | 354, 409 |
| BfmI | CTRYAG | 1 cut(s) | 236 |
| BfoI | RGCGCY | 1 cut(s) | 123 |
| BfuAI | ACCTGC | 1 cut(s) | 200 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BmcAI | AGTACT | 1 cut(s) | 310 |
| Bme1390I | CCNGG | 2 cut(s) | 330, 380 |
| BmiI | GGNNCC | 4 cut(s) | 131, 214, 250, 346 |
| BmrFI | CCNGG | 2 cut(s) | 330, 380 |
| BmrI | ACTGGG | 1 cut(s) | 268 |
| BmuI | ACTGGG | 1 cut(s) | 268 |
| Bpu10I | CCTNAGC | 2 cut(s) | 81, 116 |
| BpuMI | CCSGG | 1 cut(s) | 380 |
| BsaJI | CCNNGG | 5 cut(s) | 30, 123, 150, 216, 328 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 12, 13, 58, 139, 258, 334 |
| Bse1I | ACTGG | 1 cut(s) | 263 |
| Bse3DI | GCAATG | 1 cut(s) | 195 |
| BseBI | CCWGG | 1 cut(s) | 330 |
| BseDI | CCNNGG | 5 cut(s) | 30, 123, 150, 216, 328 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 12, 13, 58, 139, 258, 334 |
| BseMI | GCAATG | 1 cut(s) | 195 |
| BseMII | CTCAG | 2 cut(s) | 72, 107 |
| BseNI | ACTGG | 1 cut(s) | 263 |
| BseX3I | CGGCCG | 1 cut(s) | 141 |
| BseXI | GCAGC | 3 cut(s) | 124, 212, 222 |
| Bsh1236I | CGCG | 1 cut(s) | 135 |
| Bsh1285I | CGRYCG | 1 cut(s) | 144 |
| BshFI | GGCC | 2 cut(s) | 26, 143 |
| BshNI | GGYRCC | 3 cut(s) | 212, 248, 344 |
| BsiEI | CGRYCG | 1 cut(s) | 144 |
| BsiSI | CCGG | 1 cut(s) | 380 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 12, 13, 58, 139, 258, 334 |
| BsnI | GGCC | 2 cut(s) | 26, 143 |
| Bsp19I | CCATGG | 1 cut(s) | 216 |
| BspANI | GGCC | 2 cut(s) | 26, 143 |
| BspCNI | CTCAG | 2 cut(s) | 73, 108 |
| BspFNI | CGCG | 1 cut(s) | 135 |
| BspLI | GGNNCC | 4 cut(s) | 131, 214, 250, 346 |
| BspMAI | CTGCAG | 1 cut(s) | 240 |
| BspMI | ACCTGC | 1 cut(s) | 200 |
| BspT107I | GGYRCC | 3 cut(s) | 212, 248, 344 |
| BsrDI | GCAATG | 1 cut(s) | 195 |
| BsrI | ACTGG | 1 cut(s) | 263 |
| BssECI | CCNNGG | 5 cut(s) | 30, 123, 150, 216, 328 |
| BssT1I | CCWWGG | 2 cut(s) | 30, 216 |
| Bst2UI | CCWGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 1 cut(s) | 93 |
| BstC8I | GCNNGC | 2 cut(s) | 112, 349 |
| BstDEI | CTNAG | 2 cut(s) | 81, 116 |
| BstDSI | CCRYGG | 2 cut(s) | 150, 216 |
| BstFNI | CGCG | 1 cut(s) | 135 |
| BstH2I | RGCGCY | 1 cut(s) | 123 |
| BstHHI | GCGC | 2 cut(s) | 122, 137 |
| BstMCI | CGRYCG | 1 cut(s) | 144 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 77, 143, 146, 206 |
| BstNI | CCWGG | 1 cut(s) | 330 |
| BstSCI | CCNGG | 2 cut(s) | 328, 378 |
| BstSFI | CTRYAG | 1 cut(s) | 236 |
| BstUI | CGCG | 1 cut(s) | 135 |
| BstV1I | GCAGC | 3 cut(s) | 124, 212, 222 |
| BstZI | CGGCCG | 1 cut(s) | 141 |
| BsuRI | GGCC | 2 cut(s) | 26, 143 |
| BtgI | CCRYGG | 2 cut(s) | 150, 216 |
| BveI | ACCTGC | 1 cut(s) | 200 |
| Cac8I | GCNNGC | 2 cut(s) | 112, 349 |
| CciNI | GCGGCCGC | 1 cut(s) | 141 |
| CfoI | GCGC | 2 cut(s) | 122, 137 |
| Csp6I | GTAC | 2 cut(s) | 160, 309 |
| CviAII | CATG | 1 cut(s) | 217 |
| CviJI | RGCY | 6 cut(s) | 26, 80, 132, 143, 221, 293 |
| CviKI_1 | RGCY | 6 cut(s) | 26, 80, 132, 143, 221, 293 |
| CviQI | GTAC | 2 cut(s) | 160, 309 |
| DdeI | CTNAG | 2 cut(s) | 81, 116 |
| EaeI | YGGCCR | 2 cut(s) | 24, 141 |
| EagI | CGGCCG | 1 cut(s) | 141 |
| EciI | GGCGGA | 1 cut(s) | 285 |
| EclXI | CGGCCG | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 2 cut(s) | 30, 216 |
| Eco52I | CGGCCG | 1 cut(s) | 141 |
| Eco57I | CTGAAG | 1 cut(s) | 38 |
| EcoRII | CCWGG | 1 cut(s) | 328 |
| EcoT14I | CCWWGG | 2 cut(s) | 30, 216 |
| ErhI | CCWWGG | 2 cut(s) | 30, 216 |
| FaeI | CATG | 1 cut(s) | 220 |
| FaiI | YATR | 1 cut(s) | 218 |
| FatI | CATG | 1 cut(s) | 216 |
| FauI | CCCGC | 3 cut(s) | 6, 51, 119 |
| FspBI | CTAG | 2 cut(s) | 354, 409 |
| GlaI | GCGC | 2 cut(s) | 121, 136 |
| HaeII | RGCGCY | 1 cut(s) | 123 |
| HaeIII | GGCC | 2 cut(s) | 26, 143 |
| HapII | CCGG | 1 cut(s) | 380 |
| HhaI | GCGC | 2 cut(s) | 122, 137 |
| Hin1II | CATG | 1 cut(s) | 220 |
| Hin6I | GCGC | 2 cut(s) | 120, 135 |
| HinP1I | GCGC | 2 cut(s) | 120, 135 |
| HinfI | GANTC | 4 cut(s) | 62, 155, 375, 400 |
| HpaII | CCGG | 1 cut(s) | 380 |
| HphI | GGTGA | 2 cut(s) | 97, 113 |
| Hpy166II | GTNNAC | 1 cut(s) | 374 |
| Hpy8I | GTNNAC | 1 cut(s) | 374 |
| HpyAV | CCTTC | 7 cut(s) | 34, 62, 178, 199, 238, 259, 335 |
| HpyCH4III | ACNGT | 1 cut(s) | 93 |
| HpyCH4V | TGCA | 1 cut(s) | 238 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 77, 143, 146, 206 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 116 |
| Hsp92II | CATG | 1 cut(s) | 220 |
| HspAI | GCGC | 2 cut(s) | 120, 135 |
| LmnI | GCTCC | 2 cut(s) | 129, 298 |
| Lsp1109I | GCAGC | 3 cut(s) | 124, 212, 222 |
| MaeI | CTAG | 2 cut(s) | 354, 409 |
| MboII | GAAGA | 2 cut(s) | 253, 298 |
| MlyI | GAGTC | 4 cut(s) | 71, 164, 369, 394 |
| MmeI | TCCRAC | 1 cut(s) | 75 |
| MnlI | CCTC | 4 cut(s) | 76, 91, 118, 376 |
| MroXI | GAANNNNTTC | 1 cut(s) | 51 |
| MspA1I | CMGCKG | 1 cut(s) | 58 |
| MspI | CCGG | 1 cut(s) | 380 |
| MspR9I | CCNGG | 2 cut(s) | 330, 380 |
| MvaI | CCWGG | 1 cut(s) | 330 |
| MvnI | CGCG | 1 cut(s) | 135 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 77, 143, 146, 206 |
| NciI | CCSGG | 1 cut(s) | 380 |
| NcoI | CCATGG | 1 cut(s) | 216 |
| NlaIII | CATG | 1 cut(s) | 220 |
| NlaIV | GGNNCC | 4 cut(s) | 131, 214, 250, 346 |
| NmeAIII | GCCGAG | 1 cut(s) | 148 |
| NotI | GCGGCCGC | 1 cut(s) | 141 |
| PaqCI | CACCTGC | 1 cut(s) | 200 |
| PdmI | GAANNNNTTC | 1 cut(s) | 51 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PfoI | TCCNGGA | 1 cut(s) | 378 |
| PleI | GAGTC | 4 cut(s) | 70, 163, 369, 394 |
| PpsI | GAGTC | 4 cut(s) | 70, 163, 369, 394 |
| Psp6I | CCWGG | 1 cut(s) | 328 |
| PspGI | CCWGG | 1 cut(s) | 328 |
| PspN4I | GGNNCC | 4 cut(s) | 131, 214, 250, 346 |
| PstI | CTGCAG | 1 cut(s) | 240 |
| RsaI | GTAC | 2 cut(s) | 161, 310 |
| RsaNI | GTAC | 2 cut(s) | 160, 309 |
| ScaI | AGTACT | 1 cut(s) | 310 |
| SchI | GAGTC | 4 cut(s) | 71, 164, 369, 394 |
| ScrFI | CCNGG | 2 cut(s) | 330, 380 |
| SetI | ASST | 7 cut(s) | 45, 87, 214, 295, 339, 346, 410 |
| SfcI | CTRYAG | 1 cut(s) | 236 |
| SspMI | CTAG | 2 cut(s) | 354, 409 |
| StyD4I | CCNGG | 2 cut(s) | 328, 378 |
| StyI | CCWWGG | 2 cut(s) | 30, 216 |
| TaaI | ACNGT | 1 cut(s) | 93 |
| TaqI | TCGA | 1 cut(s) | 255 |
| TaqII | GACCGA | 1 cut(s) | 209 |
| TatI | WGTACW | 1 cut(s) | 308 |
| TauI | GCSGC | 7 cut(s) | 29, 71, 135, 143, 146, 149, 280 |
| TseI | GCWGC | 4 cut(s) | 10, 137, 200, 235 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 223 |
| XmnI | GAANNNNTTC | 1 cut(s) | 51 |
| XspI | CTAG | 2 cut(s) | 354, 409 |
| ZrmI | AGTACT | 1 cut(s) | 310 |