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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc36I | ACCTGC | 1 cut(s) | 652 |
| AccB1I | GGYRCC | 2 cut(s) | 335, 1775 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 540, 1785 |
| AccBSI | CCGCTC | 5 cut(s) | 1305, 1429, 1591, 1850, 1899 |
| AccI | GTMKAC | 3 cut(s) | 6, 978, 1328 |
| AccII | CGCG | 8 cut(s) | 62, 187, 432, 904, 969, 1177, 1233, 1974 |
| AccIII | TCCGGA | 1 cut(s) | 190 |
| AclI | AACGTT | 1 cut(s) | 1557 |
| AclWI | GGATC | 3 cut(s) | 484, 1638, 1657 |
| AcoI | YGGCCR | 2 cut(s) | 1832, 1879 |
| AcsI | RAATTY | 1 cut(s) | 73 |
| AcuI | CTGAAG | 5 cut(s) | 993, 1262, 1336, 1652, 1983 |
| AcyI | GRCGYC | 4 cut(s) | 9, 1406, 1539, 1776 |
| AfaI | GTAC | 6 cut(s) | 635, 728, 770, 1174, 1300, 1846 |
| AflIII | ACRYGT | 3 cut(s) | 537, 902, 1614 |
| AgsI | TTSAA | 3 cut(s) | 409, 952, 1889 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 721 |
| AjiI | CACGTC | 1 cut(s) | 1372 |
| AjnI | CCWGG | 9 cut(s) | 645, 987, 1281, 1398, 1419, 1437, 1479, 1876, 1996 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 38, 70 |
| AluBI | AGCT | 9 cut(s) | 697, 880, 890, 1240, 1435, 1489, 1552, 1603, 1829 |
| AluI | AGCT | 9 cut(s) | 697, 880, 890, 1240, 1435, 1489, 1552, 1603, 1829 |
| Alw21I | GWGCWC | 2 cut(s) | 439, 1437 |
| Alw26I | GTCTC | 2 cut(s) | 908, 1974 |
| Alw44I | GTGCAC | 1 cut(s) | 435 |
| AlwI | GGATC | 3 cut(s) | 484, 1638, 1657 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1261, 1420 |
| Ama87I | CYCGRG | 3 cut(s) | 452, 1265, 1900 |
| Aor13HI | TCCGGA | 1 cut(s) | 190 |
| AoxI | GGCC | 8 cut(s) | 933, 993, 1227, 1453, 1476, 1744, 1832, 1879 |
| ApaI | GGGCCC | 2 cut(s) | 1231, 1748 |
| ApaLI | GTGCAC | 1 cut(s) | 435 |
| ApeKI | GCWGC | 9 cut(s) | 215, 550, 880, 1237, 1624, 1762, 1765, 1813, 1859 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1183, 1215 |
| AspLEI | GCGC | 9 cut(s) | 62, 246, 691, 971, 1021, 1054, 1093, 1778, 1976 |
| AsuC2I | CCSGG | 2 cut(s) | 364, 1225 |
| AsuHPI | GGTGA | 5 cut(s) | 383, 1126, 1213, 1366, 1727 |
| AvaI | CYCGRG | 3 cut(s) | 452, 1265, 1900 |
| AvaII | GGWCC | 6 cut(s) | 593, 780, 964, 1036, 1067, 1179 |
| AxyI | CCTNAGG | 1 cut(s) | 710 |
| BaeGI | GKGCMC | 6 cut(s) | 439, 480, 533, 1231, 1371, 1748 |
| BalI | TGGCCA | 1 cut(s) | 1881 |
| BanI | GGYRCC | 2 cut(s) | 335, 1775 |
| BanII | GRGCYC | 6 cut(s) | 1061, 1231, 1437, 1748, 1897, 1992 |
| BauI | CACGAG | 2 cut(s) | 102, 494 |
| Bbv12I | GWGCWC | 2 cut(s) | 439, 1437 |
| BbvCI | CCTCAGC | 1 cut(s) | 1737 |
| BbvI | GCAGC | 9 cut(s) | 202, 537, 867, 1249, 1611, 1749, 1777, 1825, 1846 |
| BccI | CCATC | 4 cut(s) | 836, 1787, 1825, 1999 |
| BceAI | ACGGC | 7 cut(s) | 349, 771, 893, 1044, 1120, 1134, 1182 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 546, 580, 1511, 1545 |
| BciT130I | CCWGG | 9 cut(s) | 647, 989, 1283, 1400, 1421, 1439, 1481, 1878, 1998 |
| BciVI | GTATCC | 1 cut(s) | 298 |
| BcnI | CCSGG | 2 cut(s) | 364, 1225 |
| BcoDI | GTCTC | 2 cut(s) | 908, 1974 |
| BfaI | CTAG | 6 cut(s) | 131, 201, 248, 440, 473, 1709 |
| BfmI | CTRYAG | 4 cut(s) | 485, 1287, 1625, 1763 |
| BfoI | RGCGCY | 5 cut(s) | 247, 692, 1055, 1094, 1779 |
| BfuAI | ACCTGC | 1 cut(s) | 652 |
| BfuI | GTATCC | 1 cut(s) | 298 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1691 |
| BlpI | GCTNAGC | 1 cut(s) | 1055 |
| Bme18I | GGWCC | 6 cut(s) | 593, 780, 964, 1036, 1067, 1179 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 721 |
| BmeT110I | CYCGRG | 3 cut(s) | 452, 1265, 1900 |
| BmgBI | CACGTC | 1 cut(s) | 1372 |
| BmrI | ACTGGG | 3 cut(s) | 932, 1795, 1951 |
| BmsI | GCATC | 5 cut(s) | 191, 519, 1519, 1749, 1791 |
| BmuI | ACTGGG | 3 cut(s) | 932, 1795, 1951 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1334 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 203, 235, 1922, 1954 |
| BpmI | CTGGAG | 3 cut(s) | 1010, 1421, 1625 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1644, 1737 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1055 |
| BpuMI | CCSGG | 2 cut(s) | 364, 1225 |
| BsaAI | YACGTR | 1 cut(s) | 637 |
| BsaHI | GRCGYC | 4 cut(s) | 9, 1406, 1539, 1776 |
| BsaWI | WCCGGW | 1 cut(s) | 190 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 785, 815, 983, 1013 |
| Bse118I | RCCGGY | 3 cut(s) | 1069, 1093, 1804 |
| Bse1I | ACTGG | 5 cut(s) | 734, 868, 927, 1790, 1957 |
| Bse21I | CCTNAGG | 1 cut(s) | 710 |
| Bse3DI | GCAATG | 2 cut(s) | 747, 966 |
| BseAI | TCCGGA | 1 cut(s) | 190 |
| BseBI | CCWGG | 9 cut(s) | 647, 989, 1283, 1400, 1421, 1439, 1481, 1878, 1998 |
| BseGI | GGATG | 3 cut(s) | 828, 1429, 2010 |
| BseMI | GCAATG | 2 cut(s) | 747, 966 |
| BseMII | CTCAG | 7 cut(s) | 685, 701, 867, 1046, 1686, 1728, 1955 |
| BseNI | ACTGG | 5 cut(s) | 734, 868, 927, 1790, 1957 |
| BseRI | GAGGAG | 1 cut(s) | 1090 |
| BseSI | GKGCMC | 6 cut(s) | 439, 480, 533, 1231, 1371, 1748 |
| BseXI | GCAGC | 9 cut(s) | 202, 537, 867, 1249, 1611, 1749, 1777, 1825, 1846 |
| BseYI | CCCAGC | 2 cut(s) | 758, 1976 |
| BsgI | GTGCAG | 2 cut(s) | 126, 1832 |
| Bsh1236I | CGCG | 8 cut(s) | 62, 187, 432, 904, 969, 1177, 1233, 1974 |
| Bsh1285I | CGRYCG | 2 cut(s) | 600, 1809 |
| BshFI | GGCC | 8 cut(s) | 935, 995, 1229, 1455, 1478, 1746, 1834, 1881 |
| BshNI | GGYRCC | 2 cut(s) | 335, 1775 |
| BsiEI | CGRYCG | 2 cut(s) | 600, 1809 |
| BsiHKAI | GWGCWC | 2 cut(s) | 439, 1437 |
| BsiHKCI | CYCGRG | 3 cut(s) | 452, 1265, 1900 |
| BsiSI | CCGG | 7 cut(s) | 39, 191, 364, 1070, 1094, 1224, 1805 |
| BslFI | GGGAC | 5 cut(s) | 176, 728, 1080, 1478, 1603 |
| BsmAI | GTCTC | 2 cut(s) | 908, 1974 |
| BsmFI | GGGAC | 5 cut(s) | 176, 728, 1080, 1478, 1603 |
| BsnI | GGCC | 8 cut(s) | 935, 995, 1229, 1455, 1478, 1746, 1834, 1881 |
| BsoBI | CYCGRG | 3 cut(s) | 452, 1265, 1900 |
| Bsp120I | GGGCCC | 2 cut(s) | 1227, 1744 |
| Bsp13I | TCCGGA | 1 cut(s) | 190 |
| Bsp143I | GATC | 5 cut(s) | 489, 699, 1630, 1662, 1698 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1055 |
| BspANI | GGCC | 8 cut(s) | 935, 995, 1229, 1455, 1478, 1746, 1834, 1881 |
| BspCNI | CTCAG | 7 cut(s) | 684, 702, 868, 1047, 1687, 1729, 1954 |
| BspEI | TCCGGA | 1 cut(s) | 190 |
| BspFNI | CGCG | 8 cut(s) | 62, 187, 432, 904, 969, 1177, 1233, 1974 |
| BspHI | TCATGA | 1 cut(s) | 1387 |
| BspMAI | CTGCAG | 2 cut(s) | 1629, 1767 |
| BspMI | ACCTGC | 1 cut(s) | 652 |
| BspPI | GGATC | 3 cut(s) | 484, 1638, 1657 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BspT107I | GGYRCC | 2 cut(s) | 335, 1775 |
| BsrBI | CCGCTC | 5 cut(s) | 1305, 1429, 1591, 1850, 1899 |
| BsrDI | GCAATG | 2 cut(s) | 747, 966 |
| BsrFI | RCCGGY | 3 cut(s) | 1069, 1093, 1804 |
| BsrI | ACTGG | 5 cut(s) | 734, 868, 927, 1790, 1957 |
| BssAI | RCCGGY | 3 cut(s) | 1069, 1093, 1804 |
| BssMI | GATC | 5 cut(s) | 489, 699, 1630, 1662, 1698 |
| BssNI | GRCGYC | 4 cut(s) | 9, 1406, 1539, 1776 |
| BssSI | CACGAG | 2 cut(s) | 102, 494 |
| BssT1I | CCWWGG | 1 cut(s) | 682 |
| Bst2BI | CACGAG | 2 cut(s) | 102, 494 |
| Bst2UI | CCWGG | 9 cut(s) | 647, 989, 1283, 1400, 1421, 1439, 1481, 1878, 1998 |
| Bst4CI | ACNGT | 8 cut(s) | 392, 601, 941, 1104, 1114, 1128, 1378, 2013 |
| Bst6I | CTCTTC | 1 cut(s) | 234 |
| BstACI | GRCGYC | 4 cut(s) | 9, 1406, 1539, 1776 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1261 |
| BstBAI | YACGTR | 1 cut(s) | 637 |
| BstDEI | CTNAG | 8 cut(s) | 671, 710, 876, 1055, 1644, 1695, 1737, 1941 |
| BstDSI | CCRYGG | 6 cut(s) | 158, 430, 600, 753, 1061, 1543 |
| BstEII | GGTNACC | 1 cut(s) | 1219 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1625 |
| BstF5I | GGATG | 3 cut(s) | 828, 1429, 2010 |
| BstFNI | CGCG | 8 cut(s) | 62, 187, 432, 904, 969, 1177, 1233, 1974 |
| BstH2I | RGCGCY | 5 cut(s) | 247, 692, 1055, 1094, 1779 |
| BstHHI | GCGC | 9 cut(s) | 62, 246, 691, 971, 1021, 1054, 1093, 1778, 1976 |
| BstKTI | GATC | 5 cut(s) | 492, 702, 1633, 1665, 1701 |
| BstMAI | GTCTC | 2 cut(s) | 908, 1974 |
| BstMBI | GATC | 5 cut(s) | 489, 699, 1630, 1662, 1698 |
| BstMCI | CGRYCG | 2 cut(s) | 600, 1809 |
| BstNI | CCWGG | 9 cut(s) | 647, 989, 1283, 1400, 1421, 1439, 1481, 1878, 1998 |
| BstNSI | RCATGY | 2 cut(s) | 541, 1618 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1334 |
| BstPI | GGTNACC | 1 cut(s) | 1219 |
| BstSFI | CTRYAG | 4 cut(s) | 485, 1287, 1625, 1763 |
| BstSLI | GKGCMC | 6 cut(s) | 439, 480, 533, 1231, 1371, 1748 |
| BstUI | CGCG | 8 cut(s) | 62, 187, 432, 904, 969, 1177, 1233, 1974 |
| BstV1I | GCAGC | 9 cut(s) | 202, 537, 867, 1249, 1611, 1749, 1777, 1825, 1846 |
| BstX2I | RGATCY | 2 cut(s) | 489, 1662 |
| BstYI | RGATCY | 2 cut(s) | 489, 1662 |
| Bsu36I | CCTNAGG | 1 cut(s) | 710 |
| BsuI | GTATCC | 1 cut(s) | 298 |
| BsuRI | GGCC | 8 cut(s) | 935, 995, 1229, 1455, 1478, 1746, 1834, 1881 |
| BtgI | CCRYGG | 6 cut(s) | 158, 430, 600, 753, 1061, 1543 |
| BtgZI | GCGATG | 3 cut(s) | 168, 496, 1542 |
| BtrI | CACGTC | 1 cut(s) | 1372 |
| BtsCI | GGATG | 3 cut(s) | 828, 1429, 2010 |
| BtsI | GCAGTG | 4 cut(s) | 34, 116, 1854, 1866 |
| BtsIMutI | CAGTG | 6 cut(s) | 34, 116, 557, 920, 1854, 1866 |
| BveI | ACCTGC | 1 cut(s) | 652 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1261, 1420 |
| CciI | TCATGA | 1 cut(s) | 1387 |
| CfoI | GCGC | 9 cut(s) | 62, 246, 691, 971, 1021, 1054, 1093, 1778, 1976 |
| Cfr10I | RCCGGY | 3 cut(s) | 1069, 1093, 1804 |
| Cfr42I | CCGCGG | 1 cut(s) | 433 |
| CseI | GACGC | 8 cut(s) | 80, 176, 910, 953, 1395, 1515, 1547, 1785 |
| Csp6I | GTAC | 6 cut(s) | 634, 727, 769, 1173, 1299, 1845 |
| CviAII | CATG | 9 cut(s) | 172, 236, 368, 538, 721, 997, 1388, 1615, 1883 |
| CviQI | GTAC | 6 cut(s) | 634, 727, 769, 1173, 1299, 1845 |
| DdeI | CTNAG | 8 cut(s) | 671, 710, 876, 1055, 1644, 1695, 1737, 1941 |
| DinI | GGCGCC | 1 cut(s) | 1777 |
| DpnI | GATC | 5 cut(s) | 491, 701, 1632, 1664, 1700 |
| DpnII | GATC | 5 cut(s) | 489, 699, 1630, 1662, 1698 |
| DriI | GACNNNNNGTC | 1 cut(s) | 721 |
| EaeI | YGGCCR | 2 cut(s) | 1832, 1879 |
| Eam1104I | CTCTTC | 1 cut(s) | 234 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 721 |
| EarI | CTCTTC | 1 cut(s) | 234 |
| EciI | GGCGGA | 5 cut(s) | 80, 373, 620, 1669, 1935 |
| Ecl136II | GAGCTC | 1 cut(s) | 1435 |
| Eco130I | CCWWGG | 1 cut(s) | 682 |
| Eco24I | GRGCYC | 6 cut(s) | 1061, 1231, 1437, 1748, 1897, 1992 |
| Eco47I | GGWCC | 6 cut(s) | 593, 780, 964, 1036, 1067, 1179 |
| Eco53kI | GAGCTC | 1 cut(s) | 1435 |
| Eco57I | CTGAAG | 5 cut(s) | 993, 1262, 1336, 1652, 1983 |
| Eco81I | CCTNAGG | 1 cut(s) | 710 |
| Eco88I | CYCGRG | 3 cut(s) | 452, 1265, 1900 |
| Eco91I | GGTNACC | 1 cut(s) | 1219 |
| EcoICRI | GAGCTC | 1 cut(s) | 1435 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1625 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1227, 1744, 1745 |
| EcoO65I | GGTNACC | 1 cut(s) | 1219 |
| EcoRII | CCWGG | 9 cut(s) | 645, 987, 1281, 1398, 1419, 1437, 1479, 1876, 1996 |
| EcoT14I | CCWWGG | 1 cut(s) | 682 |
| EcoT38I | GRGCYC | 6 cut(s) | 1061, 1231, 1437, 1748, 1897, 1992 |
| EgeI | GGCGCC | 1 cut(s) | 1777 |
| EheI | GGCGCC | 1 cut(s) | 1777 |
| ErhI | CCWWGG | 1 cut(s) | 682 |
| FaeI | CATG | 9 cut(s) | 175, 239, 371, 541, 724, 1000, 1391, 1618, 1886 |
| FaqI | GGGAC | 5 cut(s) | 176, 728, 1080, 1478, 1603 |
| FatI | CATG | 9 cut(s) | 171, 235, 367, 537, 720, 996, 1387, 1614, 1882 |
| FblI | GTMKAC | 3 cut(s) | 6, 978, 1328 |
| FokI | GGATG | 2 cut(s) | 815, 1436 |
| FriOI | GRGCYC | 6 cut(s) | 1061, 1231, 1437, 1748, 1897, 1992 |
| FspBI | CTAG | 6 cut(s) | 131, 201, 248, 440, 473, 1709 |
| GlaI | GCGC | 9 cut(s) | 61, 245, 690, 970, 1020, 1053, 1092, 1777, 1975 |
| GsaI | CCCAGC | 2 cut(s) | 762, 1980 |
| GsuI | CTGGAG | 3 cut(s) | 1010, 1421, 1625 |
| HaeII | RGCGCY | 5 cut(s) | 247, 692, 1055, 1094, 1779 |
| HaeIII | GGCC | 8 cut(s) | 935, 995, 1229, 1455, 1478, 1746, 1834, 1881 |
| HapII | CCGG | 7 cut(s) | 39, 191, 364, 1070, 1094, 1224, 1805 |
| HgaI | GACGC | 8 cut(s) | 80, 176, 910, 953, 1395, 1515, 1547, 1785 |
| HhaI | GCGC | 9 cut(s) | 62, 246, 691, 971, 1021, 1054, 1093, 1778, 1976 |
| Hin1I | GRCGYC | 4 cut(s) | 9, 1406, 1539, 1776 |
| Hin1II | CATG | 9 cut(s) | 175, 239, 371, 541, 724, 1000, 1391, 1618, 1886 |
| Hin6I | GCGC | 9 cut(s) | 60, 244, 689, 969, 1019, 1052, 1091, 1776, 1974 |
| HinP1I | GCGC | 9 cut(s) | 60, 244, 689, 969, 1019, 1052, 1091, 1776, 1974 |
| HincII | GTYRAC | 4 cut(s) | 7, 346, 1140, 1329 |
| HindII | GTYRAC | 4 cut(s) | 7, 346, 1140, 1329 |
| HpaII | CCGG | 7 cut(s) | 39, 191, 364, 1070, 1094, 1224, 1805 |
| HphI | GGTGA | 5 cut(s) | 383, 1126, 1213, 1366, 1727 |
| Hpy166II | GTNNAC | 9 cut(s) | 7, 346, 437, 634, 667, 979, 1036, 1140, 1329 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 817, 833, 877, 1207, 1963 |
| Hpy188III | TCNNGA | 5 cut(s) | 191, 703, 952, 1354, 1388 |
| Hpy8I | GTNNAC | 9 cut(s) | 7, 346, 437, 634, 667, 979, 1036, 1140, 1329 |
| Hpy99I | CGWCG | 5 cut(s) | 11, 681, 802, 1509, 1801 |
| HpyCH4III | ACNGT | 8 cut(s) | 392, 601, 941, 1104, 1114, 1128, 1378, 2013 |
| HpyCH4IV | ACGT | 6 cut(s) | 9, 165, 636, 800, 1371, 1557 |
| HpyCH4V | TGCA | 9 cut(s) | 107, 182, 235, 437, 747, 1186, 1627, 1765, 1813 |
| HpyF3I | CTNAG | 8 cut(s) | 671, 710, 876, 1055, 1644, 1695, 1737, 1941 |
| HpySE526I | ACGT | 6 cut(s) | 9, 165, 636, 800, 1371, 1557 |
| Hsp92I | GRCGYC | 4 cut(s) | 9, 1406, 1539, 1776 |
| Hsp92II | CATG | 9 cut(s) | 175, 239, 371, 541, 724, 1000, 1391, 1618, 1886 |
| HspAI | GCGC | 9 cut(s) | 60, 244, 689, 969, 1019, 1052, 1091, 1776, 1974 |
| KasI | GGCGCC | 1 cut(s) | 1775 |
| Kpn2I | TCCGGA | 1 cut(s) | 190 |
| KroI | GCCGGC | 1 cut(s) | 1093 |
| KroNI | GCCGGC | 1 cut(s) | 1095 |
| KspI | CCGCGG | 1 cut(s) | 433 |
| Kzo9I | GATC | 5 cut(s) | 489, 699, 1630, 1662, 1698 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| Lsp1109I | GCAGC | 9 cut(s) | 202, 537, 867, 1249, 1611, 1749, 1777, 1825, 1846 |
| LweI | GCATC | 5 cut(s) | 191, 519, 1519, 1749, 1791 |
| MaeI | CTAG | 6 cut(s) | 131, 201, 248, 440, 473, 1709 |
| MaeII | ACGT | 6 cut(s) | 9, 165, 636, 800, 1371, 1557 |
| MaeIII | GTNAC | 6 cut(s) | 423, 460, 941, 1114, 1219, 1372 |
| MalI | GATC | 5 cut(s) | 491, 701, 1632, 1664, 1700 |
| MbiI | CCGCTC | 5 cut(s) | 1305, 1429, 1591, 1850, 1899 |
| MboI | GATC | 5 cut(s) | 489, 699, 1630, 1662, 1698 |
| MboII | GAAGA | 4 cut(s) | 44, 251, 1255, 1663 |
| MflI | RGATCY | 2 cut(s) | 489, 1662 |
| MlsI | TGGCCA | 1 cut(s) | 1881 |
| MluCI | AATT | 3 cut(s) | 73, 626, 807 |
| MluI | ACGCGT | 1 cut(s) | 902 |
| MluNI | TGGCCA | 1 cut(s) | 1881 |
| Mly113I | GGCGCC | 1 cut(s) | 1776 |
| MlyI | GAGTC | 6 cut(s) | 320, 431, 710, 910, 1685, 1931 |
| MmeI | TCCRAC | 3 cut(s) | 807, 1110, 1147 |
| Mox20I | TGGCCA | 1 cut(s) | 1881 |
| MreI | CGCCGGCG | 1 cut(s) | 1093 |
| MroI | TCCGGA | 1 cut(s) | 190 |
| MroNI | GCCGGC | 1 cut(s) | 1093 |
| MscI | TGGCCA | 1 cut(s) | 1881 |
| MseI | TTAA | 2 cut(s) | 81, 810 |
| Msp20I | TGGCCA | 1 cut(s) | 1881 |
| MspI | CCGG | 7 cut(s) | 39, 191, 364, 1070, 1094, 1224, 1805 |
| MvaI | CCWGG | 9 cut(s) | 647, 989, 1283, 1400, 1421, 1439, 1481, 1878, 1998 |
| MvnI | CGCG | 8 cut(s) | 62, 187, 432, 904, 969, 1177, 1233, 1974 |
| NaeI | GCCGGC | 1 cut(s) | 1095 |
| NarI | GGCGCC | 1 cut(s) | 1776 |
| NciI | CCSGG | 2 cut(s) | 364, 1225 |
| NdeII | GATC | 5 cut(s) | 489, 699, 1630, 1662, 1698 |
| NgoMIV | GCCGGC | 1 cut(s) | 1093 |
| NlaIII | CATG | 9 cut(s) | 175, 239, 371, 541, 724, 1000, 1391, 1618, 1886 |
| NmeAIII | GCCGAG | 1 cut(s) | 1810 |
| NmuCI | GTSAC | 6 cut(s) | 423, 460, 941, 1114, 1219, 1372 |
| NspI | RCATGY | 2 cut(s) | 541, 1618 |
| PagI | TCATGA | 1 cut(s) | 1387 |
| PasI | CCCWGGG | 1 cut(s) | 646 |
| PciI | ACATGT | 2 cut(s) | 537, 1614 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 50, 92, 184, 1118, 1148 |
| PdiI | GCCGGC | 1 cut(s) | 1095 |
| PfeI | GAWTC | 4 cut(s) | 35, 1208, 1343, 1923 |
| PflFI | GACNNNGTC | 1 cut(s) | 167 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 540, 1785 |
| PfoI | TCCNGGA | 2 cut(s) | 987, 1437 |
| PleI | GAGTC | 6 cut(s) | 319, 430, 710, 910, 1684, 1931 |
| PluTI | GGCGCC | 1 cut(s) | 1779 |
| PpsI | GAGTC | 6 cut(s) | 319, 430, 710, 910, 1684, 1931 |
| Ppu21I | YACGTR | 1 cut(s) | 637 |
| PscI | ACATGT | 2 cut(s) | 537, 1614 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1334 |
| Psp124BI | GAGCTC | 1 cut(s) | 1437 |
| Psp1406I | AACGTT | 1 cut(s) | 1557 |
| Psp6I | CCWGG | 9 cut(s) | 645, 987, 1281, 1398, 1419, 1437, 1479, 1876, 1996 |
| PspEI | GGTNACC | 1 cut(s) | 1219 |
| PspFI | CCCAGC | 2 cut(s) | 758, 1976 |
| PspGI | CCWGG | 9 cut(s) | 645, 987, 1281, 1398, 1419, 1437, 1479, 1876, 1996 |
| PspOMI | GGGCCC | 2 cut(s) | 1227, 1744 |
| PstI | CTGCAG | 2 cut(s) | 1629, 1767 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1261, 1420 |
| PsuI | RGATCY | 2 cut(s) | 489, 1662 |
| PsyI | GACNNNGTC | 1 cut(s) | 167 |
| PvuII | CAGCTG | 1 cut(s) | 1240 |
| RsaI | GTAC | 6 cut(s) | 635, 728, 770, 1174, 1300, 1846 |
| RsaNI | GTAC | 6 cut(s) | 634, 727, 769, 1173, 1299, 1845 |
| SacI | GAGCTC | 1 cut(s) | 1437 |
| SacII | CCGCGG | 1 cut(s) | 433 |
| SalI | GTCGAC | 2 cut(s) | 5, 1327 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 2 cut(s) | 81, 810 |
| Sau3AI | GATC | 5 cut(s) | 489, 699, 1630, 1662, 1698 |
| SchI | GAGTC | 6 cut(s) | 320, 431, 710, 910, 1685, 1931 |
| SfaNI | GCATC | 5 cut(s) | 191, 519, 1519, 1749, 1791 |
| SfcI | CTRYAG | 4 cut(s) | 485, 1287, 1625, 1763 |
| SfoI | GGCGCC | 1 cut(s) | 1777 |
| Sfr303I | CCGCGG | 1 cut(s) | 433 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1093 |
| SgrBI | CCGCGG | 1 cut(s) | 433 |
| SinI | GGWCC | 6 cut(s) | 593, 780, 964, 1036, 1067, 1179 |
| Sse9I | AATT | 3 cut(s) | 73, 626, 807 |
| SspDI | GGCGCC | 1 cut(s) | 1775 |
| SspMI | CTAG | 6 cut(s) | 131, 201, 248, 440, 473, 1709 |
| SstI | GAGCTC | 1 cut(s) | 1437 |
| StyI | CCWWGG | 1 cut(s) | 682 |
| TaaI | ACNGT | 8 cut(s) | 392, 601, 941, 1104, 1114, 1128, 1378, 2013 |
| TaiI | ACGT | 6 cut(s) | 12, 168, 639, 803, 1374, 1560 |
| TaqI | TCGA | 9 cut(s) | 6, 23, 138, 327, 702, 1328, 1500, 1782, 1799 |
| TaqII | GACCGA | 1 cut(s) | 610 |
| TasI | AATT | 3 cut(s) | 73, 626, 807 |
| TfiI | GAWTC | 4 cut(s) | 35, 1208, 1343, 1923 |
| Tru1I | TTAA | 2 cut(s) | 81, 810 |
| Tru9I | TTAA | 2 cut(s) | 81, 810 |
| TscAI | CASTG | 6 cut(s) | 34, 123, 564, 927, 1861, 1873 |
| TseFI | GTSAC | 6 cut(s) | 423, 460, 941, 1114, 1219, 1372 |
| TseI | GCWGC | 9 cut(s) | 215, 550, 880, 1237, 1624, 1762, 1765, 1813, 1859 |
| Tsp45I | GTSAC | 6 cut(s) | 423, 460, 941, 1114, 1219, 1372 |
| TspDTI | ATGAA | 2 cut(s) | 252, 1376 |
| TspGWI | ACGGA | 3 cut(s) | 84, 147, 1324 |
| TspRI | CASTG | 6 cut(s) | 34, 123, 564, 927, 1861, 1873 |
| Tth111I | GACNNNGTC | 1 cut(s) | 167 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 540, 1785 |
| VneI | GTGCAC | 1 cut(s) | 435 |
| VpaK11BI | GGWCC | 6 cut(s) | 593, 780, 964, 1036, 1067, 1179 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1625 |
| XapI | RAATTY | 1 cut(s) | 73 |
| XceI | RCATGY | 2 cut(s) | 541, 1618 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1417 |
| XmiI | GTMKAC | 3 cut(s) | 6, 978, 1328 |
| XspI | CTAG | 6 cut(s) | 131, 201, 248, 440, 473, 1709 |
| ZraI | GACGTC | 1 cut(s) | 10 |