Encoded by
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1947 |
| Acc36I | ACCTGC | 2 cut(s) | 720, 1996 |
| Acc65I | GGTACC | 1 cut(s) | 1063 |
| AccB1I | GGYRCC | 5 cut(s) | 164, 352, 1063, 1312, 2003 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 417 |
| AccBSI | CCGCTC | 4 cut(s) | 73, 1375, 2010, 2114 |
| AccI | GTMKAC | 1 cut(s) | 753 |
| AccII | CGCG | 8 cut(s) | 66, 308, 807, 1583, 1593, 1802, 1997, 2172 |
| AccIII | TCCGGA | 2 cut(s) | 292, 458 |
| AcoI | YGGCCR | 4 cut(s) | 385, 1014, 1608, 1803 |
| AcsI | RAATTY | 3 cut(s) | 380, 402, 780 |
| AcuI | CTGAAG | 3 cut(s) | 993, 1919, 2214 |
| AcvI | CACGTG | 1 cut(s) | 2084 |
| AcyI | GRCGYC | 6 cut(s) | 281, 1313, 1454, 1555, 1578, 1587 |
| AfaI | GTAC | 4 cut(s) | 866, 1065, 1841, 1986 |
| AfeI | AGCGCT | 1 cut(s) | 91 |
| AflIII | ACRYGT | 2 cut(s) | 414, 1440 |
| AgeI | ACCGGT | 1 cut(s) | 734 |
| AgsI | TTSAA | 6 cut(s) | 110, 365, 779, 818, 1787, 1825 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 139, 2136 |
| AhlI | ACTAGT | 1 cut(s) | 59 |
| AjiI | CACGTC | 1 cut(s) | 17 |
| AjnI | CCWGG | 4 cut(s) | 369, 558, 852, 2037 |
| Alw21I | GWGCWC | 4 cut(s) | 13, 29, 315, 1485 |
| Alw26I | GTCTC | 8 cut(s) | 902, 1109, 1235, 1508, 1648, 1938, 2055, 2123 |
| Alw44I | GTGCAC | 1 cut(s) | 311 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1468 |
| Ama87I | CYCGRG | 2 cut(s) | 905, 2148 |
| Aor13HI | TCCGGA | 2 cut(s) | 292, 458 |
| Aor51HI | AGCGCT | 1 cut(s) | 91 |
| ApaI | GGGCCC | 1 cut(s) | 1879 |
| ApaLI | GTGCAC | 1 cut(s) | 311 |
| ApoI | RAATTY | 3 cut(s) | 380, 402, 780 |
| AsiGI | ACCGGT | 1 cut(s) | 734 |
| Asp718I | GGTACC | 1 cut(s) | 1063 |
| AsuC2I | CCSGG | 5 cut(s) | 215, 240, 524, 789, 1171 |
| AsuHPI | GGTGA | 7 cut(s) | 50, 229, 259, 910, 986, 1382, 1759 |
| AsuNHI | GCTAGC | 1 cut(s) | 95 |
| AvaI | CYCGRG | 2 cut(s) | 905, 2148 |
| AvaII | GGWCC | 4 cut(s) | 615, 829, 1082, 1252 |
| AxyI | CCTNAGG | 1 cut(s) | 1778 |
| BaeGI | GKGCMC | 4 cut(s) | 315, 1879, 1966, 2008 |
| BalI | TGGCCA | 2 cut(s) | 387, 1610 |
| BanI | GGYRCC | 5 cut(s) | 164, 352, 1063, 1312, 2003 |
| BanII | GRGCYC | 3 cut(s) | 29, 1485, 1879 |
| BauI | CACGAG | 1 cut(s) | 314 |
| BbrPI | CACGTG | 1 cut(s) | 2084 |
| BbsI | GAAGAC | 1 cut(s) | 896 |
| Bbv12I | GWGCWC | 4 cut(s) | 13, 29, 315, 1485 |
| BccI | CCATC | 5 cut(s) | 155, 975, 1361, 1619, 2111 |
| BceAI | ACGGC | 3 cut(s) | 155, 191, 1568 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2163, 2197 |
| BciT130I | CCWGG | 4 cut(s) | 371, 560, 854, 2039 |
| BcnI | CCSGG | 5 cut(s) | 215, 240, 524, 789, 1171 |
| BcoDI | GTCTC | 8 cut(s) | 902, 1109, 1235, 1508, 1648, 1938, 2055, 2123 |
| BcuI | ACTAGT | 1 cut(s) | 59 |
| BfaI | CTAG | 4 cut(s) | 30, 60, 96, 1880 |
| BfmI | CTRYAG | 1 cut(s) | 1673 |
| BfoI | RGCGCY | 7 cut(s) | 93, 569, 920, 1187, 1201, 1316, 1914 |
| BfuAI | ACCTGC | 2 cut(s) | 720, 1996 |
| BlpI | GCTNAGC | 1 cut(s) | 920 |
| Bme1390I | CCNGG | 9 cut(s) | 215, 240, 371, 524, 560, 789, 854, 1171, 2039 |
| Bme18I | GGWCC | 4 cut(s) | 615, 829, 1082, 1252 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 139, 2136 |
| BmeT110I | CYCGRG | 2 cut(s) | 905, 2148 |
| BmgBI | CACGTC | 1 cut(s) | 17 |
| BmrFI | CCNGG | 9 cut(s) | 215, 240, 371, 524, 560, 789, 854, 1171, 2039 |
| BmrI | ACTGGG | 1 cut(s) | 2062 |
| BmsI | GCATC | 4 cut(s) | 417, 942, 1933, 2194 |
| BmtI | GCTAGC | 1 cut(s) | 99 |
| BmuI | ACTGGG | 1 cut(s) | 2062 |
| BpiI | GAAGAC | 1 cut(s) | 896 |
| BpmI | CTGGAG | 4 cut(s) | 875, 1241, 1490, 1778 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1484, 1692, 2011 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 920 |
| BpuEI | CTTGAG | 3 cut(s) | 140, 568, 1208 |
| BpuMI | CCSGG | 5 cut(s) | 215, 240, 524, 789, 1171 |
| BsaAI | YACGTR | 1 cut(s) | 2084 |
| BsaHI | GRCGYC | 6 cut(s) | 281, 1313, 1454, 1555, 1578, 1587 |
| BsaI | GGTCTC | 2 cut(s) | 2055, 2123 |
| BsaWI | WCCGGW | 5 cut(s) | 231, 292, 458, 734, 937 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 848, 878 |
| Bse118I | RCCGGY | 5 cut(s) | 734, 1016, 1108, 1144, 1200 |
| Bse1I | ACTGG | 5 cut(s) | 611, 918, 925, 1323, 2068 |
| Bse21I | CCTNAGG | 1 cut(s) | 1778 |
| Bse3DI | GCAATG | 1 cut(s) | 831 |
| BseAI | TCCGGA | 2 cut(s) | 292, 458 |
| BseBI | CCWGG | 4 cut(s) | 371, 560, 854, 2039 |
| BseGI | GGATG | 9 cut(s) | 166, 198, 231, 277, 467, 1240, 1372, 1611, 2122 |
| BseMI | GCAATG | 1 cut(s) | 831 |
| BseMII | CTCAG | 8 cut(s) | 129, 911, 1498, 1550, 1769, 1949, 2025, 2066 |
| BseNI | ACTGG | 5 cut(s) | 611, 918, 925, 1323, 2068 |
| BseRI | GAGGAG | 2 cut(s) | 1151, 1244 |
| BseSI | GKGCMC | 4 cut(s) | 315, 1879, 1966, 2008 |
| BseX3I | CGGCCG | 1 cut(s) | 1803 |
| BseYI | CCCAGC | 2 cut(s) | 653, 1871 |
| BsgI | GTGCAG | 2 cut(s) | 1124, 1736 |
| Bsh1236I | CGCG | 8 cut(s) | 66, 308, 807, 1583, 1593, 1802, 1997, 2172 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1806 |
| BshNI | GGYRCC | 5 cut(s) | 164, 352, 1063, 1312, 2003 |
| BshTI | ACCGGT | 1 cut(s) | 734 |
| BsiEI | CGRYCG | 1 cut(s) | 1806 |
| BsiHKAI | GWGCWC | 4 cut(s) | 13, 29, 315, 1485 |
| BsiHKCI | CYCGRG | 2 cut(s) | 905, 2148 |
| BslFI | GGGAC | 4 cut(s) | 628, 1068, 1634, 2124 |
| BsmAI | GTCTC | 8 cut(s) | 902, 1109, 1235, 1508, 1648, 1938, 2055, 2123 |
| BsmBI | CGTCTC | 1 cut(s) | 1648 |
| BsmFI | GGGAC | 4 cut(s) | 628, 1068, 1634, 2124 |
| BsmI | GAATGC | 1 cut(s) | 1820 |
| Bso31I | GGTCTC | 2 cut(s) | 2055, 2123 |
| BsoBI | CYCGRG | 2 cut(s) | 905, 2148 |
| Bsp120I | GGGCCC | 1 cut(s) | 1875 |
| Bsp1286I | GDGCHC | 7 cut(s) | 13, 29, 315, 1485, 1879, 1966, 2008 |
| Bsp13I | TCCGGA | 2 cut(s) | 292, 458 |
| Bsp1407I | TGTACA | 1 cut(s) | 864 |
| Bsp143I | GATC | 2 cut(s) | 576, 2158 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 920 |
| Bsp68I | TCGCGA | 2 cut(s) | 66, 807 |
| BspCNI | CTCAG | 8 cut(s) | 130, 912, 1497, 1551, 1770, 1948, 2024, 2065 |
| BspEI | TCCGGA | 2 cut(s) | 292, 458 |
| BspFNI | CGCG | 8 cut(s) | 66, 308, 807, 1583, 1593, 1802, 1997, 2172 |
| BspMAI | CTGCAG | 1 cut(s) | 1677 |
| BspMI | ACCTGC | 2 cut(s) | 720, 1996 |
| BspOI | GCTAGC | 1 cut(s) | 99 |
| BspT107I | GGYRCC | 5 cut(s) | 164, 352, 1063, 1312, 2003 |
| BspTNI | GGTCTC | 2 cut(s) | 2055, 2123 |
| BsrBI | CCGCTC | 4 cut(s) | 73, 1375, 2010, 2114 |
| BsrDI | GCAATG | 1 cut(s) | 831 |
| BsrFI | RCCGGY | 5 cut(s) | 734, 1016, 1108, 1144, 1200 |
| BsrGI | TGTACA | 1 cut(s) | 864 |
| BsrI | ACTGG | 5 cut(s) | 611, 918, 925, 1323, 2068 |
| BssAI | RCCGGY | 5 cut(s) | 734, 1016, 1108, 1144, 1200 |
| BssMI | GATC | 2 cut(s) | 576, 2158 |
| BssNI | GRCGYC | 6 cut(s) | 281, 1313, 1454, 1555, 1578, 1587 |
| BssSI | CACGAG | 1 cut(s) | 314 |
| BssT1I | CCWWGG | 3 cut(s) | 331, 1130, 1178 |
| Bst2BI | CACGAG | 1 cut(s) | 314 |
| Bst2UI | CCWGG | 4 cut(s) | 371, 560, 854, 2039 |
| Bst4CI | ACNGT | 9 cut(s) | 268, 833, 895, 983, 1042, 1102, 1120, 1606, 1830 |
| Bst6I | CTCTTC | 3 cut(s) | 1215, 1221, 1391 |
| BstACI | GRCGYC | 6 cut(s) | 281, 1313, 1454, 1555, 1578, 1587 |
| BstAUI | TGTACA | 1 cut(s) | 864 |
| BstBAI | YACGTR | 1 cut(s) | 2084 |
| BstDSI | CCRYGG | 4 cut(s) | 306, 1581, 1591, 1995 |
| BstEII | GGTNACC | 1 cut(s) | 1684 |
| BstF5I | GGATG | 9 cut(s) | 166, 198, 231, 277, 467, 1240, 1372, 1611, 2122 |
| BstFNI | CGCG | 8 cut(s) | 66, 308, 807, 1583, 1593, 1802, 1997, 2172 |
| BstH2I | RGCGCY | 7 cut(s) | 93, 569, 920, 1187, 1201, 1316, 1914 |
| BstKTI | GATC | 2 cut(s) | 579, 2161 |
| BstMAI | GTCTC | 8 cut(s) | 902, 1109, 1235, 1508, 1648, 1938, 2055, 2123 |
| BstMBI | GATC | 2 cut(s) | 576, 2158 |
| BstMCI | CGRYCG | 1 cut(s) | 1806 |
| BstNI | CCWGG | 4 cut(s) | 371, 560, 854, 2039 |
| BstNSI | RCATGY | 4 cut(s) | 418, 1078, 1444, 2192 |
| BstPI | GGTNACC | 1 cut(s) | 1684 |
| BstSCI | CCNGG | 9 cut(s) | 213, 238, 369, 522, 558, 787, 852, 1169, 2037 |
| BstSFI | CTRYAG | 1 cut(s) | 1673 |
| BstSLI | GKGCMC | 4 cut(s) | 315, 1879, 1966, 2008 |
| BstUI | CGCG | 8 cut(s) | 66, 308, 807, 1583, 1593, 1802, 1997, 2172 |
| BstV2I | GAAGAC | 1 cut(s) | 896 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1330 |
| BstZI | CGGCCG | 1 cut(s) | 1803 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1778 |
| BtgI | CCRYGG | 4 cut(s) | 306, 1581, 1591, 1995 |
| BtgZI | GCGATG | 1 cut(s) | 1648 |
| BtrI | CACGTC | 1 cut(s) | 17 |
| BtsCI | GGATG | 9 cut(s) | 166, 198, 231, 277, 467, 1240, 1372, 1611, 2122 |
| BtsI | GCAGTG | 1 cut(s) | 1122 |
| BtsIMutI | CAGTG | 5 cut(s) | 911, 1017, 1047, 1122, 1330 |
| BtuMI | TCGCGA | 2 cut(s) | 66, 807 |
| BveI | ACCTGC | 2 cut(s) | 720, 1996 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1468 |
| CciNI | GCGGCCGC | 1 cut(s) | 1803 |
| Cfr10I | RCCGGY | 5 cut(s) | 734, 1016, 1108, 1144, 1200 |
| Cfr42I | CCGCGG | 4 cut(s) | 309, 1584, 1594, 1998 |
| CseI | GACGC | 9 cut(s) | 143, 270, 613, 818, 1443, 1544, 1586, 1595, 1630 |
| Csp6I | GTAC | 4 cut(s) | 865, 1064, 1840, 1985 |
| CspAI | ACCGGT | 1 cut(s) | 734 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1060, 1095 |
| CviAII | CATG | 7 cut(s) | 389, 415, 598, 1075, 1436, 1441, 2189 |
| CviQI | GTAC | 4 cut(s) | 865, 1064, 1840, 1985 |
| DinI | GGCGCC | 1 cut(s) | 1314 |
| DpnI | GATC | 2 cut(s) | 578, 2160 |
| DpnII | GATC | 2 cut(s) | 576, 2158 |
| DriI | GACNNNNNGTC | 2 cut(s) | 139, 2136 |
| EaeI | YGGCCR | 4 cut(s) | 385, 1014, 1608, 1803 |
| EagI | CGGCCG | 1 cut(s) | 1803 |
| Eam1104I | CTCTTC | 3 cut(s) | 1215, 1221, 1391 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 139, 2136 |
| EarI | CTCTTC | 3 cut(s) | 1215, 1221, 1391 |
| Ecl136II | GAGCTC | 2 cut(s) | 27, 1483 |
| EclXI | CGGCCG | 1 cut(s) | 1803 |
| Eco130I | CCWWGG | 3 cut(s) | 331, 1130, 1178 |
| Eco24I | GRGCYC | 3 cut(s) | 29, 1485, 1879 |
| Eco31I | GGTCTC | 2 cut(s) | 2055, 2123 |
| Eco47I | GGWCC | 4 cut(s) | 615, 829, 1082, 1252 |
| Eco47III | AGCGCT | 1 cut(s) | 91 |
| Eco52I | CGGCCG | 1 cut(s) | 1803 |
| Eco53kI | GAGCTC | 2 cut(s) | 27, 1483 |
| Eco57I | CTGAAG | 3 cut(s) | 993, 1919, 2214 |
| Eco72I | CACGTG | 1 cut(s) | 2084 |
| Eco81I | CCTNAGG | 1 cut(s) | 1778 |
| Eco88I | CYCGRG | 2 cut(s) | 905, 2148 |
| Eco91I | GGTNACC | 1 cut(s) | 1684 |
| EcoICRI | GAGCTC | 2 cut(s) | 27, 1483 |
| EcoO109I | RGGNCCY | 6 cut(s) | 470, 615, 1252, 1849, 1875, 1876 |
| EcoO65I | GGTNACC | 1 cut(s) | 1684 |
| EcoRII | CCWGG | 4 cut(s) | 369, 558, 852, 2037 |
| EcoT14I | CCWWGG | 3 cut(s) | 331, 1130, 1178 |
| EcoT38I | GRGCYC | 3 cut(s) | 29, 1485, 1879 |
| EgeI | GGCGCC | 1 cut(s) | 1314 |
| EheI | GGCGCC | 1 cut(s) | 1314 |
| ErhI | CCWWGG | 3 cut(s) | 331, 1130, 1178 |
| Esp3I | CGTCTC | 1 cut(s) | 1648 |
| FaeI | CATG | 7 cut(s) | 392, 418, 601, 1078, 1439, 1444, 2192 |
| FaqI | GGGAC | 4 cut(s) | 628, 1068, 1634, 2124 |
| FatI | CATG | 7 cut(s) | 388, 414, 597, 1074, 1435, 1440, 2188 |
| FblI | GTMKAC | 1 cut(s) | 753 |
| FokI | GGATG | 9 cut(s) | 173, 205, 238, 284, 474, 1247, 1379, 1598, 2129 |
| FriOI | GRGCYC | 3 cut(s) | 29, 1485, 1879 |
| FspBI | CTAG | 4 cut(s) | 30, 60, 96, 1880 |
| FspI | TGCGCA | 1 cut(s) | 1947 |
| GsaI | CCCAGC | 2 cut(s) | 657, 1875 |
| GsuI | CTGGAG | 4 cut(s) | 875, 1241, 1490, 1778 |
| HaeII | RGCGCY | 7 cut(s) | 93, 569, 920, 1187, 1201, 1316, 1914 |
| HgaI | GACGC | 9 cut(s) | 143, 270, 613, 818, 1443, 1544, 1586, 1595, 1630 |
| Hin1I | GRCGYC | 6 cut(s) | 281, 1313, 1454, 1555, 1578, 1587 |
| Hin1II | CATG | 7 cut(s) | 392, 418, 601, 1078, 1439, 1444, 2192 |
| HincII | GTYRAC | 3 cut(s) | 175, 211, 754 |
| HindII | GTYRAC | 3 cut(s) | 175, 211, 754 |
| HphI | GGTGA | 7 cut(s) | 50, 229, 259, 910, 986, 1382, 1759 |
| Hpy166II | GTNNAC | 7 cut(s) | 175, 211, 313, 544, 754, 867, 901 |
| Hpy188I | TCNGA | 5 cut(s) | 732, 931, 1560, 2074, 2158 |
| Hpy188III | TCNNGA | 8 cut(s) | 20, 65, 293, 459, 580, 806, 1507, 1777 |
| Hpy8I | GTNNAC | 7 cut(s) | 175, 211, 313, 544, 754, 867, 901 |
| Hpy99I | CGWCG | 8 cut(s) | 71, 268, 629, 679, 755, 812, 983, 2185 |
| HpyCH4III | ACNGT | 9 cut(s) | 268, 833, 895, 983, 1042, 1102, 1120, 1606, 1830 |
| HpyCH4IV | ACGT | 4 cut(s) | 16, 677, 1887, 2083 |
| HpyCH4V | TGCA | 6 cut(s) | 313, 531, 1105, 1435, 1675, 1717 |
| HpySE526I | ACGT | 4 cut(s) | 16, 677, 1887, 2083 |
| Hsp92I | GRCGYC | 6 cut(s) | 281, 1313, 1454, 1555, 1578, 1587 |
| Hsp92II | CATG | 7 cut(s) | 392, 418, 601, 1078, 1439, 1444, 2192 |
| KasI | GGCGCC | 1 cut(s) | 1312 |
| Kpn2I | TCCGGA | 2 cut(s) | 292, 458 |
| KpnI | GGTACC | 1 cut(s) | 1067 |
| KroI | GCCGGC | 3 cut(s) | 1016, 1108, 1200 |
| KroNI | GCCGGC | 3 cut(s) | 1018, 1110, 1202 |
| KspI | CCGCGG | 4 cut(s) | 309, 1584, 1594, 1998 |
| Kzo9I | GATC | 2 cut(s) | 576, 2158 |
| LmnI | GCTCC | 9 cut(s) | 16, 107, 563, 742, 776, 1138, 1285, 1480, 1654 |
| LweI | GCATC | 4 cut(s) | 417, 942, 1933, 2194 |
| MaeI | CTAG | 4 cut(s) | 30, 60, 96, 1880 |
| MaeII | ACGT | 4 cut(s) | 16, 677, 1887, 2083 |
| MaeIII | GTNAC | 8 cut(s) | 337, 791, 974, 1120, 1325, 1574, 1684, 2079 |
| MalI | GATC | 2 cut(s) | 578, 2160 |
| MbiI | CCGCTC | 4 cut(s) | 73, 1375, 2010, 2114 |
| MboI | GATC | 2 cut(s) | 576, 2158 |
| MboII | GAAGA | 8 cut(s) | 128, 281, 901, 1232, 1238, 1276, 1378, 2213 |
| MhlI | GDGCHC | 7 cut(s) | 13, 29, 315, 1485, 1879, 1966, 2008 |
| MlsI | TGGCCA | 2 cut(s) | 387, 1610 |
| MluCI | AATT | 4 cut(s) | 380, 402, 684, 780 |
| MluNI | TGGCCA | 2 cut(s) | 387, 1610 |
| Mly113I | GGCGCC | 1 cut(s) | 1313 |
| MlyI | GAGTC | 8 cut(s) | 149, 326, 811, 1205, 1328, 1733, 1868, 2053 |
| MmeI | TCCRAC | 1 cut(s) | 1632 |
| Mox20I | TGGCCA | 2 cut(s) | 387, 1610 |
| MroI | TCCGGA | 2 cut(s) | 292, 458 |
| MroNI | GCCGGC | 3 cut(s) | 1016, 1108, 1200 |
| MscI | TGGCCA | 2 cut(s) | 387, 1610 |
| MseI | TTAA | 1 cut(s) | 687 |
| MslI | CAYNNNNRTG | 3 cut(s) | 972, 1445, 1712 |
| Msp20I | TGGCCA | 2 cut(s) | 387, 1610 |
| MspR9I | CCNGG | 9 cut(s) | 215, 240, 371, 524, 560, 789, 854, 1171, 2039 |
| Mva1269I | GAATGC | 1 cut(s) | 1820 |
| MvaI | CCWGG | 4 cut(s) | 371, 560, 854, 2039 |
| MvnI | CGCG | 8 cut(s) | 66, 308, 807, 1583, 1593, 1802, 1997, 2172 |
| NaeI | GCCGGC | 3 cut(s) | 1018, 1110, 1202 |
| NarI | GGCGCC | 1 cut(s) | 1313 |
| NciI | CCSGG | 5 cut(s) | 215, 240, 524, 789, 1171 |
| NdeII | GATC | 2 cut(s) | 576, 2158 |
| NgoMIV | GCCGGC | 3 cut(s) | 1016, 1108, 1200 |
| NheI | GCTAGC | 1 cut(s) | 95 |
| NlaIII | CATG | 7 cut(s) | 392, 418, 601, 1078, 1439, 1444, 2192 |
| NmeAIII | GCCGAG | 3 cut(s) | 1369, 1385, 2135 |
| NmuCI | GTSAC | 6 cut(s) | 337, 974, 1120, 1325, 1574, 2079 |
| NotI | GCGGCCGC | 1 cut(s) | 1803 |
| NruI | TCGCGA | 2 cut(s) | 66, 807 |
| NsbI | TGCGCA | 1 cut(s) | 1947 |
| NspI | RCATGY | 4 cut(s) | 418, 1078, 1444, 2192 |
| PaeI | GCATGC | 1 cut(s) | 2192 |
| PciI | ACATGT | 2 cut(s) | 414, 1440 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 13 |
| PctI | GAATGC | 1 cut(s) | 1820 |
| PdiI | GCCGGC | 3 cut(s) | 1018, 1110, 1202 |
| PfeI | GAWTC | 4 cut(s) | 583, 593, 703, 1046 |
| PflFI | GACNNNGTC | 1 cut(s) | 1858 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 417 |
| PfoI | TCCNGGA | 1 cut(s) | 852 |
| PinAI | ACCGGT | 1 cut(s) | 734 |
| PleI | GAGTC | 8 cut(s) | 148, 325, 810, 1205, 1328, 1732, 1867, 2053 |
| PluTI | GGCGCC | 1 cut(s) | 1316 |
| PmaCI | CACGTG | 1 cut(s) | 2084 |
| PmlI | CACGTG | 1 cut(s) | 2084 |
| PpsI | GAGTC | 8 cut(s) | 148, 325, 810, 1205, 1328, 1732, 1867, 2053 |
| Ppu21I | YACGTR | 1 cut(s) | 2084 |
| PpuMI | RGGWCCY | 2 cut(s) | 615, 1252 |
| PscI | ACATGT | 2 cut(s) | 414, 1440 |
| Psp124BI | GAGCTC | 2 cut(s) | 29, 1485 |
| Psp5II | RGGWCCY | 2 cut(s) | 615, 1252 |
| Psp6I | CCWGG | 4 cut(s) | 369, 558, 852, 2037 |
| PspCI | CACGTG | 1 cut(s) | 2084 |
| PspEI | GGTNACC | 1 cut(s) | 1684 |
| PspFI | CCCAGC | 2 cut(s) | 653, 1871 |
| PspGI | CCWGG | 4 cut(s) | 369, 558, 852, 2037 |
| PspOMI | GGGCCC | 1 cut(s) | 1875 |
| PspPPI | RGGWCCY | 2 cut(s) | 615, 1252 |
| PstI | CTGCAG | 1 cut(s) | 1677 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1468 |
| PsyI | GACNNNGTC | 1 cut(s) | 1858 |
| PvuII | CAGCTG | 1 cut(s) | 1951 |
| RruI | TCGCGA | 2 cut(s) | 66, 807 |
| RsaI | GTAC | 4 cut(s) | 866, 1065, 1841, 1986 |
| RsaNI | GTAC | 4 cut(s) | 865, 1064, 1840, 1985 |
| RseI | CAYNNNNRTG | 3 cut(s) | 972, 1445, 1712 |
| SacI | GAGCTC | 2 cut(s) | 29, 1485 |
| SacII | CCGCGG | 4 cut(s) | 309, 1584, 1594, 1998 |
| SalI | GTCGAC | 1 cut(s) | 752 |
| SaqAI | TTAA | 1 cut(s) | 687 |
| Sau3AI | GATC | 2 cut(s) | 576, 2158 |
| SchI | GAGTC | 8 cut(s) | 149, 326, 811, 1205, 1328, 1733, 1868, 2053 |
| ScrFI | CCNGG | 9 cut(s) | 215, 240, 371, 524, 560, 789, 854, 1171, 2039 |
| SduI | GDGCHC | 7 cut(s) | 13, 29, 315, 1485, 1879, 1966, 2008 |
| SfaNI | GCATC | 4 cut(s) | 417, 942, 1933, 2194 |
| SfcI | CTRYAG | 1 cut(s) | 1673 |
| SfoI | GGCGCC | 1 cut(s) | 1314 |
| Sfr303I | CCGCGG | 4 cut(s) | 309, 1584, 1594, 1998 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1144 |
| SgrBI | CCGCGG | 4 cut(s) | 309, 1584, 1594, 1998 |
| SinI | GGWCC | 4 cut(s) | 615, 829, 1082, 1252 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 972, 1445, 1712 |
| SmlI | CTYRAG | 3 cut(s) | 155, 547, 1187 |
| SmoI | CTYRAG | 3 cut(s) | 155, 547, 1187 |
| SpeI | ACTAGT | 1 cut(s) | 59 |
| SphI | GCATGC | 1 cut(s) | 2192 |
| Sse9I | AATT | 4 cut(s) | 380, 402, 684, 780 |
| SspDI | GGCGCC | 1 cut(s) | 1312 |
| SspI | AATATT | 1 cut(s) | 199 |
| SspMI | CTAG | 4 cut(s) | 30, 60, 96, 1880 |
| SstI | GAGCTC | 2 cut(s) | 29, 1485 |
| StyD4I | CCNGG | 9 cut(s) | 213, 238, 369, 522, 558, 787, 852, 1169, 2037 |
| StyI | CCWWGG | 3 cut(s) | 331, 1130, 1178 |
| TaaI | ACNGT | 9 cut(s) | 268, 833, 895, 983, 1042, 1102, 1120, 1606, 1830 |
| TaiI | ACGT | 4 cut(s) | 19, 680, 1890, 2086 |
| TaqI | TCGA | 7 cut(s) | 579, 659, 724, 753, 1248, 1473, 1917 |
| TaqII | GACCGA | 2 cut(s) | 386, 1871 |
| TasI | AATT | 4 cut(s) | 380, 402, 684, 780 |
| TatI | WGTACW | 2 cut(s) | 864, 1839 |
| TfiI | GAWTC | 4 cut(s) | 583, 593, 703, 1046 |
| Tru1I | TTAA | 1 cut(s) | 687 |
| Tru9I | TTAA | 1 cut(s) | 687 |
| TscAI | CASTG | 5 cut(s) | 918, 1017, 1047, 1129, 1330 |
| TseFI | GTSAC | 6 cut(s) | 337, 974, 1120, 1325, 1574, 2079 |
| Tsp45I | GTSAC | 6 cut(s) | 337, 974, 1120, 1325, 1574, 2079 |
| TspDTI | ATGAA | 3 cut(s) | 209, 482, 1650 |
| TspGWI | ACGGA | 4 cut(s) | 94, 336, 763, 1379 |
| TspRI | CASTG | 5 cut(s) | 918, 1017, 1047, 1129, 1330 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1858 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 417 |
| VneI | GTGCAC | 1 cut(s) | 311 |
| VpaK11BI | GGWCC | 4 cut(s) | 615, 829, 1082, 1252 |
| XapI | RAATTY | 3 cut(s) | 380, 402, 780 |
| XceI | RCATGY | 4 cut(s) | 418, 1078, 1444, 2192 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 968 |
| XmiI | GTMKAC | 1 cut(s) | 753 |
| XspI | CTAG | 4 cut(s) | 30, 60, 96, 1880 |