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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1043 |
| Acc16I | TGCGCA | 1 cut(s) | 804 |
| AccB1I | GGYRCC | 3 cut(s) | 566, 1091, 1168 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 420, 642 |
| AccBSI | CCGCTC | 2 cut(s) | 1291, 1531 |
| AccI | GTMKAC | 1 cut(s) | 819 |
| AccII | CGCG | 2 cut(s) | 180, 359 |
| AclWI | GGATC | 1 cut(s) | 1277 |
| AcoI | YGGCCR | 2 cut(s) | 1278, 1393 |
| AcsI | RAATTY | 4 cut(s) | 547, 698, 780, 1271 |
| AcuI | CTGAAG | 1 cut(s) | 167 |
| AcyI | GRCGYC | 1 cut(s) | 454 |
| AfaI | GTAC | 2 cut(s) | 492, 650 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 420, 562, 577, 612, 642, 1009, 1489 |
| AflIII | ACRYGT | 1 cut(s) | 48 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 558 |
| AjiI | CACGTC | 1 cut(s) | 49 |
| AjnI | CCWGG | 1 cut(s) | 831 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1286, 1318 |
| Alw21I | GWGCWC | 4 cut(s) | 726, 1119, 1422, 1476 |
| Alw44I | GTGCAC | 1 cut(s) | 1115 |
| AlwI | GGATC | 1 cut(s) | 1277 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 642, 832 |
| Ama87I | CYCGRG | 3 cut(s) | 22, 122, 974 |
| AoxI | GGCC | 9 cut(s) | 347, 473, 906, 1013, 1034, 1076, 1278, 1351, 1393 |
| ApaLI | GTGCAC | 1 cut(s) | 1115 |
| ApeKI | GCWGC | 8 cut(s) | 251, 760, 800, 805, 1060, 1189, 1441, 1534 |
| ApoI | RAATTY | 4 cut(s) | 547, 698, 780, 1271 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 492 |
| AspLEI | GCGC | 2 cut(s) | 182, 805 |
| AspS9I | GGNCC | 6 cut(s) | 310, 347, 473, 1013, 1034, 1352 |
| AsuHPI | GGTGA | 4 cut(s) | 299, 673, 694, 1219 |
| AsuII | TTCGAA | 1 cut(s) | 1436 |
| AvaI | CYCGRG | 3 cut(s) | 22, 122, 974 |
| AvaII | GGWCC | 1 cut(s) | 310 |
| AxyI | CCTNAGG | 1 cut(s) | 1446 |
| BaeGI | GKGCMC | 3 cut(s) | 571, 1119, 1173 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 843, 876 |
| BalI | TGGCCA | 1 cut(s) | 1395 |
| BanI | GGYRCC | 3 cut(s) | 566, 1091, 1168 |
| BanII | GRGCYC | 2 cut(s) | 1422, 1476 |
| BauI | CACGAG | 2 cut(s) | 1415, 1569 |
| BbsI | GAAGAC | 1 cut(s) | 386 |
| Bbv12I | GWGCWC | 4 cut(s) | 726, 1119, 1422, 1476 |
| BbvI | GCAGC | 8 cut(s) | 263, 747, 787, 817, 1047, 1201, 1453, 1546 |
| BccI | CCATC | 6 cut(s) | 564, 1081, 1130, 1334, 1404, 1412 |
| BceAI | ACGGC | 1 cut(s) | 893 |
| BciT130I | CCWGG | 1 cut(s) | 833 |
| BclI | TGATCA | 1 cut(s) | 901 |
| BfaI | CTAG | 6 cut(s) | 131, 183, 201, 1427, 1512, 1576 |
| BfmI | CTRYAG | 5 cut(s) | 105, 532, 761, 1061, 1364 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 797 |
| BlpI | GCTNAGC | 1 cut(s) | 1384 |
| BmcAI | AGTACT | 1 cut(s) | 492 |
| Bme1390I | CCNGG | 1 cut(s) | 833 |
| Bme18I | GGWCC | 1 cut(s) | 310 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 558 |
| BmeT110I | CYCGRG | 3 cut(s) | 22, 122, 974 |
| BmgBI | CACGTC | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 6 cut(s) | 310, 347, 473, 1013, 1034, 1352 |
| BmiI | GGNNCC | 9 cut(s) | 112, 262, 311, 568, 1014, 1035, 1093, 1170, 1345 |
| BmrFI | CCNGG | 1 cut(s) | 833 |
| BmsI | GCATC | 4 cut(s) | 100, 1492, 1546, 1555 |
| BoxI | GACNNNNGTC | 1 cut(s) | 815 |
| BpiI | GAAGAC | 1 cut(s) | 386 |
| BpmI | CTGGAG | 1 cut(s) | 1076 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1287, 1506 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1384 |
| Bpu14I | TTCGAA | 1 cut(s) | 1436 |
| BsaHI | GRCGYC | 1 cut(s) | 454 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1286, 1316 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 420, 562, 577, 612, 642, 1009, 1489 |
| Bse118I | RCCGGY | 2 cut(s) | 1234, 1349 |
| Bse1I | ACTGG | 3 cut(s) | 636, 801, 1037 |
| Bse21I | CCTNAGG | 1 cut(s) | 1446 |
| BseBI | CCWGG | 1 cut(s) | 833 |
| BseGI | GGATG | 4 cut(s) | 928, 1156, 1165, 1507 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 420, 562, 577, 612, 642, 1009, 1489 |
| BseMII | CTCAG | 6 cut(s) | 861, 924, 1278, 1398, 1437, 1520 |
| BseNI | ACTGG | 3 cut(s) | 636, 801, 1037 |
| BseRI | GAGGAG | 2 cut(s) | 227, 1484 |
| BseSI | GKGCMC | 3 cut(s) | 571, 1119, 1173 |
| BseXI | GCAGC | 8 cut(s) | 263, 747, 787, 817, 1047, 1201, 1453, 1546 |
| BseYI | CCCAGC | 1 cut(s) | 642 |
| Bsh1236I | CGCG | 2 cut(s) | 180, 359 |
| BshFI | GGCC | 9 cut(s) | 349, 475, 908, 1015, 1036, 1078, 1280, 1353, 1395 |
| BshNI | GGYRCC | 3 cut(s) | 566, 1091, 1168 |
| BsiHKAI | GWGCWC | 4 cut(s) | 726, 1119, 1422, 1476 |
| BsiHKCI | CYCGRG | 3 cut(s) | 22, 122, 974 |
| BsiSI | CCGG | 4 cut(s) | 329, 792, 1235, 1350 |
| BslFI | GGGAC | 2 cut(s) | 396, 537 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 420, 562, 577, 612, 642, 1009, 1489 |
| BsmFI | GGGAC | 2 cut(s) | 396, 537 |
| BsmI | GAATGC | 1 cut(s) | 1556 |
| BsnI | GGCC | 9 cut(s) | 349, 475, 908, 1015, 1036, 1078, 1280, 1353, 1395 |
| BsoBI | CYCGRG | 3 cut(s) | 22, 122, 974 |
| Bsp119I | TTCGAA | 1 cut(s) | 1436 |
| Bsp1286I | GDGCHC | 6 cut(s) | 571, 726, 1119, 1173, 1422, 1476 |
| Bsp143I | GATC | 3 cut(s) | 748, 901, 1282 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1384 |
| BspANI | GGCC | 9 cut(s) | 349, 475, 908, 1015, 1036, 1078, 1280, 1353, 1395 |
| BspCNI | CTCAG | 6 cut(s) | 860, 925, 1279, 1397, 1438, 1519 |
| BspFNI | CGCG | 2 cut(s) | 180, 359 |
| BspHI | TCATGA | 1 cut(s) | 223 |
| BspLI | GGNNCC | 9 cut(s) | 112, 262, 311, 568, 1014, 1035, 1093, 1170, 1345 |
| BspMAI | CTGCAG | 4 cut(s) | 109, 536, 765, 1065 |
| BspPI | GGATC | 1 cut(s) | 1277 |
| BspQI | GCTCTTC | 2 cut(s) | 143, 1427 |
| BspT104I | TTCGAA | 1 cut(s) | 1436 |
| BspT107I | GGYRCC | 3 cut(s) | 566, 1091, 1168 |
| BsrBI | CCGCTC | 2 cut(s) | 1291, 1531 |
| BsrFI | RCCGGY | 2 cut(s) | 1234, 1349 |
| BsrI | ACTGG | 3 cut(s) | 636, 801, 1037 |
| BssAI | RCCGGY | 2 cut(s) | 1234, 1349 |
| BssMI | GATC | 3 cut(s) | 748, 901, 1282 |
| BssNI | GRCGYC | 1 cut(s) | 454 |
| BssSI | CACGAG | 2 cut(s) | 1415, 1569 |
| BssT1I | CCWWGG | 5 cut(s) | 158, 267, 1073, 1099, 1542 |
| Bst2BI | CACGAG | 2 cut(s) | 1415, 1569 |
| Bst2UI | CCWGG | 1 cut(s) | 833 |
| Bst4CI | ACNGT | 7 cut(s) | 139, 432, 481, 817, 1144, 1213, 1360 |
| Bst6I | CTCTTC | 3 cut(s) | 143, 268, 1427 |
| BstACI | GRCGYC | 1 cut(s) | 454 |
| BstBI | TTCGAA | 1 cut(s) | 1436 |
| BstDEI | CTNAG | 8 cut(s) | 772, 847, 933, 1287, 1384, 1446, 1506, 1561 |
| BstDSI | CCRYGG | 4 cut(s) | 357, 480, 858, 909 |
| BstEII | GGTNACC | 1 cut(s) | 1207 |
| BstF5I | GGATG | 4 cut(s) | 928, 1156, 1165, 1507 |
| BstFNI | CGCG | 2 cut(s) | 180, 359 |
| BstHHI | GCGC | 2 cut(s) | 182, 805 |
| BstKTI | GATC | 3 cut(s) | 751, 904, 1285 |
| BstMBI | GATC | 3 cut(s) | 748, 901, 1282 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 127, 797, 905, 1003, 1012, 1033, 1123, 1517, 1565 |
| BstNI | CCWGG | 1 cut(s) | 833 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 815 |
| BstPI | GGTNACC | 1 cut(s) | 1207 |
| BstSCI | CCNGG | 1 cut(s) | 831 |
| BstSFI | CTRYAG | 5 cut(s) | 105, 532, 761, 1061, 1364 |
| BstSLI | GKGCMC | 3 cut(s) | 571, 1119, 1173 |
| BstUI | CGCG | 2 cut(s) | 180, 359 |
| BstV1I | GCAGC | 8 cut(s) | 263, 747, 787, 817, 1047, 1201, 1453, 1546 |
| BstV2I | GAAGAC | 1 cut(s) | 386 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1446 |
| BsuRI | GGCC | 9 cut(s) | 349, 475, 908, 1015, 1036, 1078, 1280, 1353, 1395 |
| BtgI | CCRYGG | 4 cut(s) | 357, 480, 858, 909 |
| BtgZI | GCGATG | 1 cut(s) | 1569 |
| BtrI | CACGTC | 1 cut(s) | 49 |
| BtsCI | GGATG | 4 cut(s) | 928, 1156, 1165, 1507 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 541 |
| BtsIMutI | CAGTG | 5 cut(s) | 34, 116, 135, 541, 643 |
| CaiI | CAGNNNCTG | 2 cut(s) | 642, 832 |
| CciI | TCATGA | 1 cut(s) | 223 |
| CfoI | GCGC | 2 cut(s) | 182, 805 |
| Cfr10I | RCCGGY | 2 cut(s) | 1234, 1349 |
| Cfr13I | GGNCC | 6 cut(s) | 310, 347, 473, 1013, 1034, 1352 |
| Cfr42I | CCGCGG | 1 cut(s) | 360 |
| CseI | GACGC | 3 cut(s) | 443, 616, 662 |
| Csp6I | GTAC | 2 cut(s) | 491, 649 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 465, 500 |
| CviAII | CATG | 6 cut(s) | 224, 304, 601, 871, 959, 1147 |
| CviQI | GTAC | 2 cut(s) | 491, 649 |
| DdeI | CTNAG | 8 cut(s) | 772, 847, 933, 1287, 1384, 1446, 1506, 1561 |
| DpnI | GATC | 3 cut(s) | 750, 903, 1284 |
| DpnII | GATC | 3 cut(s) | 748, 901, 1282 |
| DriI | GACNNNNNGTC | 1 cut(s) | 558 |
| EaeI | YGGCCR | 2 cut(s) | 1278, 1393 |
| Eam1104I | CTCTTC | 3 cut(s) | 143, 268, 1427 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 558 |
| EarI | CTCTTC | 3 cut(s) | 143, 268, 1427 |
| EciI | GGCGGA | 6 cut(s) | 80, 253, 1347, 1514, 1535, 1562 |
| Ecl136II | GAGCTC | 2 cut(s) | 1420, 1474 |
| Eco130I | CCWWGG | 5 cut(s) | 158, 267, 1073, 1099, 1542 |
| Eco147I | AGGCCT | 1 cut(s) | 1078 |
| Eco24I | GRGCYC | 2 cut(s) | 1422, 1476 |
| Eco47I | GGWCC | 1 cut(s) | 310 |
| Eco53kI | GAGCTC | 2 cut(s) | 1420, 1474 |
| Eco57I | CTGAAG | 1 cut(s) | 167 |
| Eco81I | CCTNAGG | 1 cut(s) | 1446 |
| Eco88I | CYCGRG | 3 cut(s) | 22, 122, 974 |
| Eco91I | GGTNACC | 1 cut(s) | 1207 |
| EcoICRI | GAGCTC | 2 cut(s) | 1420, 1474 |
| EcoO109I | RGGNCCY | 2 cut(s) | 310, 1013 |
| EcoO65I | GGTNACC | 1 cut(s) | 1207 |
| EcoRI | GAATTC | 2 cut(s) | 698, 1271 |
| EcoRII | CCWGG | 1 cut(s) | 831 |
| EcoT14I | CCWWGG | 5 cut(s) | 158, 267, 1073, 1099, 1542 |
| EcoT38I | GRGCYC | 2 cut(s) | 1422, 1476 |
| ErhI | CCWWGG | 5 cut(s) | 158, 267, 1073, 1099, 1542 |
| FaeI | CATG | 6 cut(s) | 227, 307, 604, 874, 962, 1150 |
| FaqI | GGGAC | 2 cut(s) | 396, 537 |
| FatI | CATG | 6 cut(s) | 223, 303, 600, 870, 958, 1146 |
| FauI | CCCGC | 6 cut(s) | 606, 831, 976, 1002, 1284, 1479 |
| FbaI | TGATCA | 1 cut(s) | 901 |
| FblI | GTMKAC | 1 cut(s) | 819 |
| FokI | GGATG | 4 cut(s) | 915, 1163, 1172, 1514 |
| FriOI | GRGCYC | 2 cut(s) | 1422, 1476 |
| FspBI | CTAG | 6 cut(s) | 131, 183, 201, 1427, 1512, 1576 |
| FspI | TGCGCA | 1 cut(s) | 804 |
| GlaI | GCGC | 2 cut(s) | 181, 804 |
| GsaI | CCCAGC | 1 cut(s) | 646 |
| GsuI | CTGGAG | 1 cut(s) | 1076 |
| HaeIII | GGCC | 9 cut(s) | 349, 475, 908, 1015, 1036, 1078, 1280, 1353, 1395 |
| HapII | CCGG | 4 cut(s) | 329, 792, 1235, 1350 |
| HgaI | GACGC | 3 cut(s) | 443, 616, 662 |
| HhaI | GCGC | 2 cut(s) | 182, 805 |
| Hin1I | GRCGYC | 1 cut(s) | 454 |
| Hin1II | CATG | 6 cut(s) | 227, 307, 604, 874, 962, 1150 |
| Hin6I | GCGC | 2 cut(s) | 180, 803 |
| HinP1I | GCGC | 2 cut(s) | 180, 803 |
| HincII | GTYRAC | 1 cut(s) | 820 |
| HindII | GTYRAC | 1 cut(s) | 820 |
| HinfI | GANTC | 8 cut(s) | 35, 83, 325, 596, 1051, 1066, 1163, 1250 |
| HpaII | CCGG | 4 cut(s) | 329, 792, 1235, 1350 |
| HphI | GGTGA | 4 cut(s) | 299, 673, 694, 1219 |
| Hpy166II | GTNNAC | 3 cut(s) | 539, 820, 1117 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 441, 678, 850 |
| Hpy188III | TCNNGA | 9 cut(s) | 22, 191, 224, 317, 583, 932, 974, 1055, 1286 |
| Hpy8I | GTNNAC | 3 cut(s) | 539, 820, 1117 |
| Hpy99I | CGWCG | 5 cut(s) | 632, 656, 682, 821, 1378 |
| HpyAV | CCTTC | 5 cut(s) | 323, 464, 514, 616, 662 |
| HpyCH4III | ACNGT | 7 cut(s) | 139, 432, 481, 817, 1144, 1213, 1360 |
| HpyCH4IV | ACGT | 2 cut(s) | 48, 680 |
| HpyCH4V | TGCA | 9 cut(s) | 91, 107, 534, 763, 997, 1063, 1117, 1268, 1414 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 127, 797, 905, 1003, 1012, 1033, 1123, 1517, 1565 |
| HpyF3I | CTNAG | 8 cut(s) | 772, 847, 933, 1287, 1384, 1446, 1506, 1561 |
| HpySE526I | ACGT | 2 cut(s) | 48, 680 |
| Hsp92I | GRCGYC | 1 cut(s) | 454 |
| Hsp92II | CATG | 6 cut(s) | 227, 307, 604, 874, 962, 1150 |
| HspAI | GCGC | 2 cut(s) | 180, 803 |
| KroI | GCCGGC | 2 cut(s) | 1234, 1349 |
| KroNI | GCCGGC | 2 cut(s) | 1236, 1351 |
| Ksp22I | TGATCA | 1 cut(s) | 901 |
| KspI | CCGCGG | 1 cut(s) | 360 |
| Kzo9I | GATC | 3 cut(s) | 748, 901, 1282 |
| LguI | GCTCTTC | 2 cut(s) | 143, 1427 |
| LmnI | GCTCC | 5 cut(s) | 757, 1024, 1057, 1471, 1528 |
| Lsp1109I | GCAGC | 8 cut(s) | 263, 747, 787, 817, 1047, 1201, 1453, 1546 |
| LweI | GCATC | 4 cut(s) | 100, 1492, 1546, 1555 |
| MaeI | CTAG | 6 cut(s) | 131, 183, 201, 1427, 1512, 1576 |
| MaeII | ACGT | 2 cut(s) | 48, 680 |
| MaeIII | GTNAC | 4 cut(s) | 838, 916, 1207, 1461 |
| MalI | GATC | 3 cut(s) | 750, 903, 1284 |
| MbiI | CCGCTC | 2 cut(s) | 1291, 1531 |
| MboI | GATC | 3 cut(s) | 748, 901, 1282 |
| MboII | GAAGA | 4 cut(s) | 160, 285, 386, 1414 |
| MhlI | GDGCHC | 6 cut(s) | 571, 726, 1119, 1173, 1422, 1476 |
| MlsI | TGGCCA | 1 cut(s) | 1395 |
| MluCI | AATT | 5 cut(s) | 547, 698, 780, 1044, 1271 |
| MluNI | TGGCCA | 1 cut(s) | 1395 |
| MlyI | GAGTC | 4 cut(s) | 77, 319, 1060, 1172 |
| MmeI | TCCRAC | 2 cut(s) | 675, 701 |
| Mox20I | TGGCCA | 1 cut(s) | 1395 |
| MroNI | GCCGGC | 2 cut(s) | 1234, 1349 |
| MroXI | GAANNNNTTC | 1 cut(s) | 492 |
| MscI | TGGCCA | 1 cut(s) | 1395 |
| MseI | TTAA | 1 cut(s) | 690 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1145 |
| Msp20I | TGGCCA | 1 cut(s) | 1395 |
| MspA1I | CMGCKG | 5 cut(s) | 145, 258, 359, 1006, 1537 |
| MspI | CCGG | 4 cut(s) | 329, 792, 1235, 1350 |
| MspR9I | CCNGG | 1 cut(s) | 833 |
| Mva1269I | GAATGC | 1 cut(s) | 1556 |
| MvaI | CCWGG | 1 cut(s) | 833 |
| MvnI | CGCG | 2 cut(s) | 180, 359 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 127, 797, 905, 1003, 1012, 1033, 1123, 1517, 1565 |
| NaeI | GCCGGC | 2 cut(s) | 1236, 1351 |
| NdeII | GATC | 3 cut(s) | 748, 901, 1282 |
| NgoMIV | GCCGGC | 2 cut(s) | 1234, 1349 |
| NlaIII | CATG | 6 cut(s) | 227, 307, 604, 874, 962, 1150 |
| NlaIV | GGNNCC | 9 cut(s) | 112, 262, 311, 568, 1014, 1035, 1093, 1170, 1345 |
| NmuCI | GTSAC | 2 cut(s) | 916, 1207 |
| NsbI | TGCGCA | 1 cut(s) | 804 |
| NspV | TTCGAA | 1 cut(s) | 1436 |
| PaeR7I | CTCGAG | 1 cut(s) | 22 |
| PagI | TCATGA | 1 cut(s) | 223 |
| PceI | AGGCCT | 1 cut(s) | 1078 |
| PciSI | GCTCTTC | 2 cut(s) | 143, 1427 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 184, 1413 |
| PctI | GAATGC | 1 cut(s) | 1556 |
| PdiI | GCCGGC | 2 cut(s) | 1236, 1351 |
| PdmI | GAANNNNTTC | 1 cut(s) | 492 |
| PfeI | GAWTC | 4 cut(s) | 35, 596, 1066, 1250 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 420, 642 |
| PleI | GAGTC | 4 cut(s) | 77, 319, 1059, 1171 |
| PpsI | GAGTC | 4 cut(s) | 77, 319, 1059, 1171 |
| PpuMI | RGGWCCY | 1 cut(s) | 310 |
| PshAI | GACNNNNGTC | 1 cut(s) | 815 |
| PsiI | TTATAA | 1 cut(s) | 1043 |
| Psp124BI | GAGCTC | 2 cut(s) | 1422, 1476 |
| Psp5II | RGGWCCY | 1 cut(s) | 310 |
| Psp6I | CCWGG | 1 cut(s) | 831 |
| PspEI | GGTNACC | 1 cut(s) | 1207 |
| PspFI | CCCAGC | 1 cut(s) | 642 |
| PspGI | CCWGG | 1 cut(s) | 831 |
| PspN4I | GGNNCC | 9 cut(s) | 112, 262, 311, 568, 1014, 1035, 1093, 1170, 1345 |
| PspPI | GGNCC | 6 cut(s) | 310, 347, 473, 1013, 1034, 1352 |
| PspPPI | RGGWCCY | 1 cut(s) | 310 |
| PstI | CTGCAG | 4 cut(s) | 109, 536, 765, 1065 |
| PstNI | CAGNNNCTG | 2 cut(s) | 642, 832 |
| PvuII | CAGCTG | 1 cut(s) | 1537 |
| RsaI | GTAC | 2 cut(s) | 492, 650 |
| RsaNI | GTAC | 2 cut(s) | 491, 649 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1145 |
| SacI | GAGCTC | 2 cut(s) | 1422, 1476 |
| SacII | CCGCGG | 1 cut(s) | 360 |
| SalI | GTCGAC | 1 cut(s) | 818 |
| SapI | GCTCTTC | 2 cut(s) | 143, 1427 |
| SaqAI | TTAA | 1 cut(s) | 690 |
| Sau3AI | GATC | 3 cut(s) | 748, 901, 1282 |
| Sau96I | GGNCC | 6 cut(s) | 310, 347, 473, 1013, 1034, 1352 |
| SbfI | CCTGCAGG | 1 cut(s) | 109 |
| ScaI | AGTACT | 1 cut(s) | 492 |
| SchI | GAGTC | 4 cut(s) | 77, 319, 1060, 1172 |
| ScrFI | CCNGG | 1 cut(s) | 833 |
| SdaI | CCTGCAGG | 1 cut(s) | 109 |
| SduI | GDGCHC | 6 cut(s) | 571, 726, 1119, 1173, 1422, 1476 |
| SfaNI | GCATC | 4 cut(s) | 100, 1492, 1546, 1555 |
| SfcI | CTRYAG | 5 cut(s) | 105, 532, 761, 1061, 1364 |
| Sfr274I | CTCGAG | 1 cut(s) | 22 |
| Sfr303I | CCGCGG | 1 cut(s) | 360 |
| SfuI | TTCGAA | 1 cut(s) | 1436 |
| SgrBI | CCGCGG | 1 cut(s) | 360 |
| SinI | GGWCC | 1 cut(s) | 310 |
| SlaI | CTCGAG | 1 cut(s) | 22 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1145 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 109 |
| Sse9I | AATT | 5 cut(s) | 547, 698, 780, 1044, 1271 |
| SseBI | AGGCCT | 1 cut(s) | 1078 |
| SspMI | CTAG | 6 cut(s) | 131, 183, 201, 1427, 1512, 1576 |
| SstI | GAGCTC | 2 cut(s) | 1422, 1476 |
| StuI | AGGCCT | 1 cut(s) | 1078 |
| StyD4I | CCNGG | 1 cut(s) | 831 |
| StyI | CCWWGG | 5 cut(s) | 158, 267, 1073, 1099, 1542 |
| TaaI | ACNGT | 7 cut(s) | 139, 432, 481, 817, 1144, 1213, 1360 |
| TaiI | ACGT | 2 cut(s) | 51, 683 |
| TaqI | TCGA | 4 cut(s) | 23, 582, 819, 1436 |
| TaqII | GACCGA | 1 cut(s) | 935 |
| TasI | AATT | 5 cut(s) | 547, 698, 780, 1044, 1271 |
| TatI | WGTACW | 1 cut(s) | 490 |
| TauI | GCSGC | 9 cut(s) | 130, 362, 365, 791, 877, 1009, 1126, 1129, 1534 |
| TfiI | GAWTC | 4 cut(s) | 35, 596, 1066, 1250 |
| Tru1I | TTAA | 1 cut(s) | 690 |
| Tru9I | TTAA | 1 cut(s) | 690 |
| TscAI | CASTG | 5 cut(s) | 34, 123, 142, 541, 643 |
| TseFI | GTSAC | 2 cut(s) | 916, 1207 |
| TseI | GCWGC | 8 cut(s) | 251, 760, 800, 805, 1060, 1189, 1441, 1534 |
| Tsp45I | GTSAC | 2 cut(s) | 916, 1207 |
| TspDTI | ATGAA | 2 cut(s) | 306, 681 |
| TspGWI | ACGGA | 1 cut(s) | 380 |
| TspRI | CASTG | 5 cut(s) | 34, 123, 142, 541, 643 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 420, 642 |
| VneI | GTGCAC | 1 cut(s) | 1115 |
| VpaK11BI | GGWCC | 1 cut(s) | 310 |
| XapI | RAATTY | 4 cut(s) | 547, 698, 780, 1271 |
| XhoI | CTCGAG | 1 cut(s) | 22 |
| XmiI | GTMKAC | 1 cut(s) | 819 |
| XmnI | GAANNNNTTC | 1 cut(s) | 492 |
| XspI | CTAG | 6 cut(s) | 131, 183, 201, 1427, 1512, 1576 |
| ZrmI | AGTACT | 1 cut(s) | 492 |