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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 103 |
| Acc16I | TGCGCA | 1 cut(s) | 999 |
| Acc36I | ACCTGC | 1 cut(s) | 103 |
| AccB1I | GGYRCC | 1 cut(s) | 910 |
| AccBSI | CCGCTC | 2 cut(s) | 544, 622 |
| AccI | GTMKAC | 1 cut(s) | 204 |
| AccII | CGCG | 1 cut(s) | 359 |
| AclWI | GGATC | 3 cut(s) | 422, 497, 1017 |
| AcoI | YGGCCR | 1 cut(s) | 360 |
| AfaI | GTAC | 3 cut(s) | 41, 298, 410 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 369, 502, 646, 691, 824, 864, 925, 1073 |
| AgsI | TTSAA | 3 cut(s) | 173, 475, 736 |
| AjnI | CCWGG | 5 cut(s) | 213, 517, 645, 817, 844 |
| AleI | CACNNNNGTG | 1 cut(s) | 147 |
| AluBI | AGCT | 8 cut(s) | 176, 182, 550, 592, 643, 688, 761, 901 |
| AluI | AGCT | 8 cut(s) | 176, 182, 550, 592, 643, 688, 761, 901 |
| Alw26I | GTCTC | 2 cut(s) | 296, 934 |
| AlwI | GGATC | 3 cut(s) | 422, 497, 1017 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 88 |
| Ama87I | CYCGRG | 1 cut(s) | 29 |
| AoxI | GGCC | 1 cut(s) | 360 |
| ApeKI | GCWGC | 6 cut(s) | 121, 259, 404, 547, 680, 950 |
| AspLEI | GCGC | 2 cut(s) | 751, 1000 |
| AspS9I | GGNCC | 5 cut(s) | 4, 313, 786, 828, 972 |
| AsuHPI | GGTGA | 6 cut(s) | 106, 125, 134, 161, 1064, 1088 |
| AvaI | CYCGRG | 1 cut(s) | 29 |
| AvaII | GGWCC | 5 cut(s) | 4, 313, 786, 828, 972 |
| BaeGI | GKGCMC | 1 cut(s) | 915 |
| BanI | GGYRCC | 1 cut(s) | 910 |
| BauI | CACGAG | 1 cut(s) | 582 |
| BbvI | GCAGC | 6 cut(s) | 108, 246, 416, 559, 667, 937 |
| BccI | CCATC | 5 cut(s) | 314, 479, 611, 817, 983 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 25, 59 |
| BciT130I | CCWGG | 5 cut(s) | 215, 519, 647, 819, 846 |
| BclI | TGATCA | 1 cut(s) | 628 |
| BcoDI | GTCTC | 2 cut(s) | 296, 934 |
| BfaI | CTAG | 7 cut(s) | 53, 164, 392, 792, 933, 965, 1092 |
| BfmI | CTRYAG | 4 cut(s) | 69, 260, 509, 859 |
| BfuAI | ACCTGC | 1 cut(s) | 103 |
| BlpI | GCTNAGC | 1 cut(s) | 234 |
| Bme1390I | CCNGG | 5 cut(s) | 215, 519, 647, 819, 846 |
| Bme18I | GGWCC | 5 cut(s) | 4, 313, 786, 828, 972 |
| BmeT110I | CYCGRG | 1 cut(s) | 29 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 313, 786, 828, 972 |
| BmiI | GGNNCC | 6 cut(s) | 314, 315, 787, 829, 912, 973 |
| BmrFI | CCNGG | 5 cut(s) | 215, 519, 647, 819, 846 |
| BmrI | ACTGGG | 1 cut(s) | 913 |
| BmsI | GCATC | 6 cut(s) | 117, 259, 559, 568, 718, 788 |
| BmuI | ACTGGG | 1 cut(s) | 913 |
| BoxI | GACNNNNGTC | 1 cut(s) | 156 |
| BpmI | CTGGAG | 3 cut(s) | 198, 629, 710 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 234 |
| BpuEI | CTTGAG | 1 cut(s) | 638 |
| BsaI | GGTCTC | 2 cut(s) | 296, 934 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 369, 502, 646, 691, 824, 864, 925, 1073 |
| Bse118I | RCCGGY | 1 cut(s) | 47 |
| Bse1I | ACTGG | 5 cut(s) | 93, 100, 298, 486, 919 |
| BseBI | CCWGG | 5 cut(s) | 215, 519, 647, 819, 846 |
| BseGI | GGATG | 4 cut(s) | 490, 583, 733, 801 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 369, 502, 646, 691, 824, 864, 925, 1073 |
| BseMII | CTCAG | 3 cut(s) | 233, 248, 915 |
| BseNI | ACTGG | 5 cut(s) | 93, 100, 298, 486, 919 |
| BseRI | GAGGAG | 1 cut(s) | 293 |
| BseSI | GKGCMC | 1 cut(s) | 915 |
| BseXI | GCAGC | 6 cut(s) | 108, 246, 416, 559, 667, 937 |
| BseYI | CCCAGC | 5 cut(s) | 60, 318, 466, 684, 897 |
| Bsh1236I | CGCG | 1 cut(s) | 359 |
| BshFI | GGCC | 1 cut(s) | 362 |
| BshNI | GGYRCC | 1 cut(s) | 910 |
| BsiHKCI | CYCGRG | 1 cut(s) | 29 |
| BsiSI | CCGG | 1 cut(s) | 48 |
| BslFI | GGGAC | 2 cut(s) | 299, 985 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 369, 502, 646, 691, 824, 864, 925, 1073 |
| BsmAI | GTCTC | 2 cut(s) | 296, 934 |
| BsmFI | GGGAC | 2 cut(s) | 299, 985 |
| BsmI | GAATGC | 1 cut(s) | 569 |
| BsnI | GGCC | 1 cut(s) | 362 |
| Bso31I | GGTCTC | 2 cut(s) | 296, 934 |
| BsoBI | CYCGRG | 1 cut(s) | 29 |
| Bsp1286I | GDGCHC | 1 cut(s) | 915 |
| Bsp143I | GATC | 4 cut(s) | 427, 489, 628, 1009 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 234 |
| BspANI | GGCC | 1 cut(s) | 362 |
| BspCNI | CTCAG | 3 cut(s) | 232, 247, 916 |
| BspFNI | CGCG | 1 cut(s) | 359 |
| BspHI | TCATGA | 1 cut(s) | 978 |
| BspLI | GGNNCC | 6 cut(s) | 314, 315, 787, 829, 912, 973 |
| BspMAI | CTGCAG | 2 cut(s) | 264, 863 |
| BspMI | ACCTGC | 1 cut(s) | 103 |
| BspPI | GGATC | 3 cut(s) | 422, 497, 1017 |
| BspQI | GCTCTTC | 1 cut(s) | 348 |
| BspT107I | GGYRCC | 1 cut(s) | 910 |
| BspTNI | GGTCTC | 2 cut(s) | 296, 934 |
| BsrBI | CCGCTC | 2 cut(s) | 544, 622 |
| BsrFI | RCCGGY | 1 cut(s) | 47 |
| BsrI | ACTGG | 5 cut(s) | 93, 100, 298, 486, 919 |
| BssAI | RCCGGY | 1 cut(s) | 47 |
| BssMI | GATC | 4 cut(s) | 427, 489, 628, 1009 |
| BssSI | CACGAG | 1 cut(s) | 582 |
| BssT1I | CCWWGG | 2 cut(s) | 555, 1047 |
| Bst2BI | CACGAG | 1 cut(s) | 582 |
| Bst2UI | CCWGG | 5 cut(s) | 215, 519, 647, 819, 846 |
| Bst4CI | ACNGT | 5 cut(s) | 8, 70, 158, 352, 1041 |
| Bst6I | CTCTTC | 2 cut(s) | 348, 656 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 118 |
| BstC8I | GCNNGC | 6 cut(s) | 184, 590, 759, 851, 1031, 1068 |
| BstDEI | CTNAG | 4 cut(s) | 219, 234, 832, 924 |
| BstDSI | CCRYGG | 2 cut(s) | 348, 357 |
| BstEII | GGTNACC | 1 cut(s) | 352 |
| BstF5I | GGATG | 4 cut(s) | 490, 583, 733, 801 |
| BstFNI | CGCG | 1 cut(s) | 359 |
| BstHHI | GCGC | 2 cut(s) | 751, 1000 |
| BstKTI | GATC | 4 cut(s) | 430, 492, 631, 1012 |
| BstMAI | GTCTC | 2 cut(s) | 296, 934 |
| BstMBI | GATC | 4 cut(s) | 427, 489, 628, 1009 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 53, 118, 127, 224, 338, 578, 728, 805, 850 |
| BstNI | CCWGG | 5 cut(s) | 215, 519, 647, 819, 846 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 156 |
| BstPI | GGTNACC | 1 cut(s) | 352 |
| BstSCI | CCNGG | 5 cut(s) | 213, 517, 645, 817, 844 |
| BstSFI | CTRYAG | 4 cut(s) | 69, 260, 509, 859 |
| BstSLI | GKGCMC | 1 cut(s) | 915 |
| BstUI | CGCG | 1 cut(s) | 359 |
| BstV1I | GCAGC | 6 cut(s) | 108, 246, 416, 559, 667, 937 |
| BsuRI | GGCC | 1 cut(s) | 362 |
| BtgI | CCRYGG | 2 cut(s) | 348, 357 |
| BtgZI | GCGATG | 2 cut(s) | 582, 720 |
| BtsCI | GGATG | 4 cut(s) | 490, 583, 733, 801 |
| BtsI | GCAGTG | 1 cut(s) | 868 |
| BtsIMutI | CAGTG | 3 cut(s) | 86, 291, 868 |
| BveI | ACCTGC | 1 cut(s) | 103 |
| Cac8I | GCNNGC | 6 cut(s) | 184, 590, 759, 851, 1031, 1068 |
| CaiI | CAGNNNCTG | 1 cut(s) | 88 |
| CciI | TCATGA | 1 cut(s) | 978 |
| CfoI | GCGC | 2 cut(s) | 751, 1000 |
| Cfr10I | RCCGGY | 1 cut(s) | 47 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 313, 786, 828, 972 |
| Cfr42I | CCGCGG | 1 cut(s) | 360 |
| CseI | GACGC | 1 cut(s) | 503 |
| Csp6I | GTAC | 3 cut(s) | 40, 297, 409 |
| CviAII | CATG | 4 cut(s) | 37, 979, 1001, 1024 |
| CviQI | GTAC | 3 cut(s) | 40, 297, 409 |
| DdeI | CTNAG | 4 cut(s) | 219, 234, 832, 924 |
| DpnI | GATC | 4 cut(s) | 429, 491, 630, 1011 |
| DpnII | GATC | 4 cut(s) | 427, 489, 628, 1009 |
| EaeI | YGGCCR | 1 cut(s) | 360 |
| Eam1104I | CTCTTC | 2 cut(s) | 348, 656 |
| EarI | CTCTTC | 2 cut(s) | 348, 656 |
| EciI | GGCGGA | 2 cut(s) | 485, 548 |
| Eco130I | CCWWGG | 2 cut(s) | 555, 1047 |
| Eco31I | GGTCTC | 2 cut(s) | 296, 934 |
| Eco47I | GGWCC | 5 cut(s) | 4, 313, 786, 828, 972 |
| Eco88I | CYCGRG | 1 cut(s) | 29 |
| Eco91I | GGTNACC | 1 cut(s) | 352 |
| EcoO109I | RGGNCCY | 3 cut(s) | 313, 786, 828 |
| EcoO65I | GGTNACC | 1 cut(s) | 352 |
| EcoRII | CCWGG | 5 cut(s) | 213, 517, 645, 817, 844 |
| EcoT14I | CCWWGG | 2 cut(s) | 555, 1047 |
| ErhI | CCWWGG | 2 cut(s) | 555, 1047 |
| FaeI | CATG | 4 cut(s) | 40, 982, 1004, 1027 |
| FaiI | YATR | 6 cut(s) | 38, 656, 753, 980, 1002, 1025 |
| FaqI | GGGAC | 2 cut(s) | 299, 985 |
| FatI | CATG | 4 cut(s) | 36, 978, 1000, 1023 |
| FauI | CCCGC | 2 cut(s) | 362, 818 |
| FbaI | TGATCA | 1 cut(s) | 628 |
| FblI | GTMKAC | 1 cut(s) | 204 |
| FokI | GGATG | 4 cut(s) | 497, 590, 740, 788 |
| FspBI | CTAG | 7 cut(s) | 53, 164, 392, 792, 933, 965, 1092 |
| FspI | TGCGCA | 1 cut(s) | 999 |
| GlaI | GCGC | 2 cut(s) | 750, 999 |
| GsaI | CCCAGC | 5 cut(s) | 64, 322, 470, 688, 901 |
| GsuI | CTGGAG | 3 cut(s) | 198, 629, 710 |
| HaeIII | GGCC | 1 cut(s) | 362 |
| HapII | CCGG | 1 cut(s) | 48 |
| HgaI | GACGC | 1 cut(s) | 503 |
| HhaI | GCGC | 2 cut(s) | 751, 1000 |
| Hin1II | CATG | 4 cut(s) | 40, 982, 1004, 1027 |
| Hin6I | GCGC | 2 cut(s) | 749, 998 |
| HinP1I | GCGC | 2 cut(s) | 749, 998 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HindIII | AAGCTT | 1 cut(s) | 759 |
| HinfI | GANTC | 3 cut(s) | 395, 471, 881 |
| HpaII | CCGG | 1 cut(s) | 48 |
| HphI | GGTGA | 6 cut(s) | 106, 125, 134, 161, 1064, 1088 |
| Hpy166II | GTNNAC | 2 cut(s) | 205, 1044 |
| Hpy188I | TCNGA | 7 cut(s) | 106, 222, 415, 577, 925, 1009, 1014 |
| Hpy188III | TCNNGA | 5 cut(s) | 29, 31, 431, 792, 979 |
| Hpy8I | GTNNAC | 2 cut(s) | 205, 1044 |
| Hpy99I | CGWCG | 2 cut(s) | 47, 209 |
| HpyAV | CCTTC | 5 cut(s) | 243, 322, 742, 769, 962 |
| HpyCH4III | ACNGT | 5 cut(s) | 8, 70, 158, 352, 1041 |
| HpyCH4IV | ACGT | 1 cut(s) | 42 |
| HpyCH4V | TGCA | 8 cut(s) | 112, 262, 272, 379, 404, 853, 861, 1023 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 53, 118, 127, 224, 338, 578, 728, 805, 850 |
| HpyF3I | CTNAG | 4 cut(s) | 219, 234, 832, 924 |
| HpySE526I | ACGT | 1 cut(s) | 42 |
| Hsp92II | CATG | 4 cut(s) | 40, 982, 1004, 1027 |
| HspAI | GCGC | 2 cut(s) | 749, 998 |
| KflI | GGGWCCC | 1 cut(s) | 313 |
| Ksp22I | TGATCA | 1 cut(s) | 628 |
| KspI | CCGCGG | 1 cut(s) | 360 |
| Kzo9I | GATC | 4 cut(s) | 427, 489, 628, 1009 |
| LguI | GCTCTTC | 1 cut(s) | 348 |
| LmnI | GCTCC | 4 cut(s) | 179, 232, 541, 648 |
| Lsp1109I | GCAGC | 6 cut(s) | 108, 246, 416, 559, 667, 937 |
| LweI | GCATC | 6 cut(s) | 117, 259, 559, 568, 718, 788 |
| MaeI | CTAG | 7 cut(s) | 53, 164, 392, 792, 933, 965, 1092 |
| MaeII | ACGT | 1 cut(s) | 42 |
| MaeIII | GTNAC | 3 cut(s) | 149, 352, 1052 |
| MalI | GATC | 4 cut(s) | 429, 491, 630, 1011 |
| MbiI | CCGCTC | 2 cut(s) | 544, 622 |
| MboI | GATC | 4 cut(s) | 427, 489, 628, 1009 |
| MboII | GAAGA | 3 cut(s) | 335, 337, 673 |
| MhlI | GDGCHC | 1 cut(s) | 915 |
| MluCI | AATT | 2 cut(s) | 527, 1096 |
| MlyI | GAGTC | 2 cut(s) | 389, 875 |
| MslI | CAYNNNNRTG | 1 cut(s) | 147 |
| MspA1I | CMGCKG | 6 cut(s) | 238, 359, 369, 550, 688, 722 |
| MspI | CCGG | 1 cut(s) | 48 |
| MspR9I | CCNGG | 5 cut(s) | 215, 519, 647, 819, 846 |
| Mva1269I | GAATGC | 1 cut(s) | 569 |
| MvaI | CCWGG | 5 cut(s) | 215, 519, 647, 819, 846 |
| MvnI | CGCG | 1 cut(s) | 359 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 53, 118, 127, 224, 338, 578, 728, 805, 850 |
| NdeII | GATC | 4 cut(s) | 427, 489, 628, 1009 |
| NlaIII | CATG | 4 cut(s) | 40, 982, 1004, 1027 |
| NlaIV | GGNNCC | 6 cut(s) | 314, 315, 787, 829, 912, 973 |
| NmeAIII | GCCGAG | 3 cut(s) | 37, 863, 1096 |
| NmuCI | GTSAC | 2 cut(s) | 149, 1052 |
| NsbI | TGCGCA | 1 cut(s) | 999 |
| NspI | RCATGY | 1 cut(s) | 40 |
| OliI | CACNNNNGTG | 1 cut(s) | 147 |
| PaeR7I | CTCGAG | 1 cut(s) | 29 |
| PagI | TCATGA | 1 cut(s) | 978 |
| PaqCI | CACCTGC | 1 cut(s) | 103 |
| PasI | CCCWGGG | 1 cut(s) | 818 |
| PciSI | GCTCTTC | 1 cut(s) | 348 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 404 |
| PctI | GAATGC | 1 cut(s) | 569 |
| PfeI | GAWTC | 1 cut(s) | 471 |
| PfoI | TCCNGGA | 1 cut(s) | 645 |
| PleI | GAGTC | 2 cut(s) | 389, 875 |
| PpsI | GAGTC | 2 cut(s) | 389, 875 |
| PpuMI | RGGWCCY | 3 cut(s) | 313, 786, 828 |
| PshAI | GACNNNNGTC | 1 cut(s) | 156 |
| Psp5II | RGGWCCY | 3 cut(s) | 313, 786, 828 |
| Psp6I | CCWGG | 5 cut(s) | 213, 517, 645, 817, 844 |
| PspEI | GGTNACC | 1 cut(s) | 352 |
| PspFI | CCCAGC | 5 cut(s) | 60, 318, 466, 684, 897 |
| PspGI | CCWGG | 5 cut(s) | 213, 517, 645, 817, 844 |
| PspN4I | GGNNCC | 6 cut(s) | 314, 315, 787, 829, 912, 973 |
| PspPI | GGNCC | 5 cut(s) | 4, 313, 786, 828, 972 |
| PspPPI | RGGWCCY | 3 cut(s) | 313, 786, 828 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 401, 433 |
| PstI | CTGCAG | 2 cut(s) | 264, 863 |
| PstNI | CAGNNNCTG | 1 cut(s) | 88 |
| PvuII | CAGCTG | 2 cut(s) | 550, 688 |
| RsaI | GTAC | 3 cut(s) | 41, 298, 410 |
| RsaNI | GTAC | 3 cut(s) | 40, 297, 409 |
| RseI | CAYNNNNRTG | 1 cut(s) | 147 |
| SacII | CCGCGG | 1 cut(s) | 360 |
| SalI | GTCGAC | 1 cut(s) | 203 |
| SapI | GCTCTTC | 1 cut(s) | 348 |
| Sau3AI | GATC | 4 cut(s) | 427, 489, 628, 1009 |
| Sau96I | GGNCC | 5 cut(s) | 4, 313, 786, 828, 972 |
| SchI | GAGTC | 2 cut(s) | 389, 875 |
| ScrFI | CCNGG | 5 cut(s) | 215, 519, 647, 819, 846 |
| SduI | GDGCHC | 1 cut(s) | 915 |
| SfaNI | GCATC | 6 cut(s) | 117, 259, 559, 568, 718, 788 |
| SfcI | CTRYAG | 4 cut(s) | 69, 260, 509, 859 |
| Sfr274I | CTCGAG | 1 cut(s) | 29 |
| Sfr303I | CCGCGG | 1 cut(s) | 360 |
| SgrBI | CCGCGG | 1 cut(s) | 360 |
| SinI | GGWCC | 5 cut(s) | 4, 313, 786, 828, 972 |
| SlaI | CTCGAG | 1 cut(s) | 29 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 147 |
| SmlI | CTYRAG | 2 cut(s) | 29, 617 |
| SmoI | CTYRAG | 2 cut(s) | 29, 617 |
| Sse9I | AATT | 2 cut(s) | 527, 1096 |
| SspMI | CTAG | 7 cut(s) | 53, 164, 392, 792, 933, 965, 1092 |
| StyD4I | CCNGG | 5 cut(s) | 213, 517, 645, 817, 844 |
| StyI | CCWWGG | 2 cut(s) | 555, 1047 |
| TaaI | ACNGT | 5 cut(s) | 8, 70, 158, 352, 1041 |
| TaiI | ACGT | 1 cut(s) | 45 |
| TaqI | TCGA | 4 cut(s) | 30, 204, 606, 955 |
| TasI | AATT | 2 cut(s) | 527, 1096 |
| TauI | GCSGC | 4 cut(s) | 362, 547, 722, 749 |
| TfiI | GAWTC | 1 cut(s) | 471 |
| TscAI | CASTG | 3 cut(s) | 93, 298, 868 |
| TseFI | GTSAC | 2 cut(s) | 149, 1052 |
| TseI | GCWGC | 6 cut(s) | 121, 259, 404, 547, 680, 950 |
| Tsp45I | GTSAC | 2 cut(s) | 149, 1052 |
| TspGWI | ACGGA | 3 cut(s) | 222, 492, 782 |
| TspRI | CASTG | 3 cut(s) | 93, 298, 868 |
| VpaK11BI | GGWCC | 5 cut(s) | 4, 313, 786, 828, 972 |
| XbaI | TCTAGA | 1 cut(s) | 791 |
| XceI | RCATGY | 1 cut(s) | 40 |
| XhoI | CTCGAG | 1 cut(s) | 29 |
| XmiI | GTMKAC | 1 cut(s) | 204 |
| XspI | CTAG | 7 cut(s) | 53, 164, 392, 792, 933, 965, 1092 |