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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1633 |
| Acc36I | ACCTGC | 1 cut(s) | 715 |
| AccB1I | GGYRCC | 4 cut(s) | 835, 1496, 1589, 1710 |
| AccBSI | CCGCTC | 4 cut(s) | 898, 1138, 1204, 1596 |
| AccII | CGCG | 7 cut(s) | 307, 414, 441, 443, 958, 1179, 1388 |
| AclWI | GGATC | 1 cut(s) | 324 |
| AcoI | YGGCCR | 4 cut(s) | 1146, 1194, 1389, 1539 |
| AcuI | CTGAAG | 3 cut(s) | 970, 1392, 1505 |
| AcyI | GRCGYC | 3 cut(s) | 836, 1173, 1497 |
| AfaI | GTAC | 3 cut(s) | 98, 473, 1381 |
| AflIII | ACRYGT | 2 cut(s) | 1026, 1225 |
| AgeI | ACCGGT | 1 cut(s) | 366 |
| AgsI | TTSAA | 3 cut(s) | 425, 1403, 1411 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 184 |
| AjiI | CACGTC | 2 cut(s) | 760, 1228 |
| AjnI | CCWGG | 4 cut(s) | 239, 1053, 1341, 1684 |
| AluBI | AGCT | 6 cut(s) | 91, 160, 853, 990, 1069, 1186 |
| AluI | AGCT | 6 cut(s) | 91, 160, 853, 990, 1069, 1186 |
| Alw21I | GWGCWC | 1 cut(s) | 1071 |
| Alw26I | GTCTC | 5 cut(s) | 509, 630, 1094, 1234, 1713 |
| AlwI | GGATC | 1 cut(s) | 324 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1054 |
| Ama87I | CYCGRG | 2 cut(s) | 512, 1699 |
| ApaI | GGGCCC | 2 cut(s) | 778, 1465 |
| ApeKI | GCWGC | 6 cut(s) | 553, 626, 1048, 1258, 1303, 1602 |
| AsiGI | ACCGGT | 1 cut(s) | 366 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 75 |
| AsuC2I | CCSGG | 4 cut(s) | 46, 691, 1700, 1701 |
| AsuHPI | GGTGA | 6 cut(s) | 517, 593, 778, 905, 1345, 1361 |
| AvaI | CYCGRG | 2 cut(s) | 512, 1699 |
| AvaII | GGWCC | 4 cut(s) | 201, 436, 682, 1635 |
| AxyI | CCTNAGG | 1 cut(s) | 1364 |
| BaeGI | GKGCMC | 3 cut(s) | 778, 1465, 1594 |
| BalI | TGGCCA | 2 cut(s) | 1148, 1196 |
| BanI | GGYRCC | 4 cut(s) | 835, 1496, 1589, 1710 |
| BanII | GRGCYC | 3 cut(s) | 778, 1071, 1465 |
| BbsI | GAAGAC | 1 cut(s) | 503 |
| Bbv12I | GWGCWC | 1 cut(s) | 1071 |
| BbvI | GCAGC | 6 cut(s) | 540, 638, 1060, 1245, 1315, 1614 |
| BccI | CCATC | 9 cut(s) | 299, 581, 582, 743, 884, 921, 1205, 1508, 1701 |
| BceAI | ACGGC | 4 cut(s) | 126, 827, 941, 981 |
| BciT130I | CCWGG | 4 cut(s) | 241, 1055, 1343, 1686 |
| BcnI | CCSGG | 4 cut(s) | 46, 691, 1700, 1701 |
| BcoDI | GTCTC | 5 cut(s) | 509, 630, 1094, 1234, 1713 |
| BfaI | CTAG | 3 cut(s) | 929, 944, 1726 |
| BfmI | CTRYAG | 1 cut(s) | 1259 |
| BfoI | RGCGCY | 7 cut(s) | 109, 155, 527, 707, 839, 1342, 1500 |
| BfuAI | ACCTGC | 1 cut(s) | 715 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 601 |
| BlpI | GCTNAGC | 1 cut(s) | 527 |
| BmcAI | AGTACT | 1 cut(s) | 1381 |
| Bme1390I | CCNGG | 8 cut(s) | 46, 241, 691, 1055, 1343, 1686, 1700, 1701 |
| Bme18I | GGWCC | 4 cut(s) | 201, 436, 682, 1635 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 184 |
| BmeT110I | CYCGRG | 2 cut(s) | 512, 1699 |
| BmgBI | CACGTC | 2 cut(s) | 760, 1228 |
| BmrFI | CCNGG | 8 cut(s) | 46, 241, 691, 1055, 1343, 1686, 1700, 1701 |
| BmsI | GCATC | 1 cut(s) | 1519 |
| BpiI | GAAGAC | 1 cut(s) | 503 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 842, 874 |
| BpmI | CTGGAG | 4 cut(s) | 482, 728, 1076, 1364 |
| Bpu10I | CCTNAGC | 4 cut(s) | 134, 156, 1070, 1597 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 527 |
| BpuMI | CCSGG | 4 cut(s) | 46, 691, 1700, 1701 |
| BsaAI | YACGTR | 1 cut(s) | 100 |
| BsaHI | GRCGYC | 3 cut(s) | 836, 1173, 1497 |
| BsaI | GGTCTC | 2 cut(s) | 1094, 1713 |
| BsaWI | WCCGGW | 2 cut(s) | 366, 544 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 455, 485, 1658, 1688 |
| Bse118I | RCCGGY | 6 cut(s) | 366, 595, 629, 665, 780, 1537 |
| Bse1I | ACTGG | 5 cut(s) | 197, 385, 525, 532, 1128 |
| Bse21I | CCTNAGG | 1 cut(s) | 1364 |
| Bse3DI | GCAATG | 2 cut(s) | 27, 438 |
| BseBI | CCWGG | 4 cut(s) | 241, 1055, 1343, 1686 |
| BseGI | GGATG | 3 cut(s) | 291, 592, 1621 |
| BseMI | GCAATG | 2 cut(s) | 27, 438 |
| BseMII | CTCAG | 5 cut(s) | 125, 518, 1084, 1320, 1611 |
| BseNI | ACTGG | 5 cut(s) | 197, 385, 525, 532, 1128 |
| BseRI | GAGGAG | 2 cut(s) | 312, 672 |
| BseSI | GKGCMC | 3 cut(s) | 778, 1465, 1594 |
| BseX3I | CGGCCG | 1 cut(s) | 1389 |
| BseXI | GCAGC | 6 cut(s) | 540, 638, 1060, 1245, 1315, 1614 |
| BseYI | CCCAGC | 2 cut(s) | 1457, 1638 |
| BsgI | GTGCAG | 3 cut(s) | 645, 1004, 1322 |
| Bsh1236I | CGCG | 7 cut(s) | 307, 414, 441, 443, 958, 1179, 1388 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1392 |
| BshNI | GGYRCC | 4 cut(s) | 835, 1496, 1589, 1710 |
| BshTI | ACCGGT | 1 cut(s) | 366 |
| BsiEI | CGRYCG | 1 cut(s) | 1392 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1071 |
| BsiHKCI | CYCGRG | 2 cut(s) | 512, 1699 |
| BslFI | GGGAC | 4 cut(s) | 214, 1029, 1220, 1621 |
| BsmAI | GTCTC | 5 cut(s) | 509, 630, 1094, 1234, 1713 |
| BsmBI | CGTCTC | 1 cut(s) | 1234 |
| BsmFI | GGGAC | 4 cut(s) | 214, 1029, 1220, 1621 |
| BsmI | GAATGC | 1 cut(s) | 1406 |
| Bso31I | GGTCTC | 2 cut(s) | 1094, 1713 |
| BsoBI | CYCGRG | 2 cut(s) | 512, 1699 |
| Bsp120I | GGGCCC | 2 cut(s) | 774, 1461 |
| Bsp1286I | GDGCHC | 4 cut(s) | 778, 1071, 1465, 1594 |
| Bsp143I | GATC | 3 cut(s) | 162, 316, 768 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 527 |
| Bsp68I | TCGCGA | 1 cut(s) | 414 |
| BspCNI | CTCAG | 5 cut(s) | 126, 519, 1083, 1321, 1610 |
| BspFNI | CGCG | 7 cut(s) | 307, 414, 441, 443, 958, 1179, 1388 |
| BspHI | TCATGA | 1 cut(s) | 882 |
| BspMAI | CTGCAG | 1 cut(s) | 1263 |
| BspMI | ACCTGC | 1 cut(s) | 715 |
| BspPI | GGATC | 1 cut(s) | 324 |
| BspT107I | GGYRCC | 4 cut(s) | 835, 1496, 1589, 1710 |
| BspTNI | GGTCTC | 2 cut(s) | 1094, 1713 |
| BsrBI | CCGCTC | 4 cut(s) | 898, 1138, 1204, 1596 |
| BsrDI | GCAATG | 2 cut(s) | 27, 438 |
| BsrFI | RCCGGY | 6 cut(s) | 366, 595, 629, 665, 780, 1537 |
| BsrI | ACTGG | 5 cut(s) | 197, 385, 525, 532, 1128 |
| BssAI | RCCGGY | 6 cut(s) | 366, 595, 629, 665, 780, 1537 |
| BssMI | GATC | 3 cut(s) | 162, 316, 768 |
| BssNI | GRCGYC | 3 cut(s) | 836, 1173, 1497 |
| BssT1I | CCWWGG | 4 cut(s) | 651, 1084, 1149, 1278 |
| Bst2UI | CCWGG | 4 cut(s) | 241, 1055, 1343, 1686 |
| Bst4CI | ACNGT | 4 cut(s) | 33, 64, 641, 817 |
| Bst6I | CTCTTC | 1 cut(s) | 914 |
| BstACI | GRCGYC | 3 cut(s) | 836, 1173, 1497 |
| BstBAI | YACGTR | 1 cut(s) | 100 |
| BstDEI | CTNAG | 7 cut(s) | 134, 156, 527, 1070, 1329, 1364, 1597 |
| BstDSI | CCRYGG | 3 cut(s) | 963, 1177, 1386 |
| BstEII | GGTNACC | 1 cut(s) | 1354 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1058, 1259 |
| BstF5I | GGATG | 3 cut(s) | 291, 592, 1621 |
| BstFNI | CGCG | 7 cut(s) | 307, 414, 441, 443, 958, 1179, 1388 |
| BstH2I | RGCGCY | 7 cut(s) | 109, 155, 527, 707, 839, 1342, 1500 |
| BstKTI | GATC | 3 cut(s) | 165, 319, 771 |
| BstMAI | GTCTC | 5 cut(s) | 509, 630, 1094, 1234, 1713 |
| BstMBI | GATC | 3 cut(s) | 162, 316, 768 |
| BstMCI | CGRYCG | 1 cut(s) | 1392 |
| BstNI | CCWGG | 4 cut(s) | 241, 1055, 1343, 1686 |
| BstNSI | RCATGY | 2 cut(s) | 1030, 1483 |
| BstPI | GGTNACC | 1 cut(s) | 1354 |
| BstSCI | CCNGG | 8 cut(s) | 44, 239, 689, 1053, 1341, 1684, 1698, 1699 |
| BstSFI | CTRYAG | 1 cut(s) | 1259 |
| BstSLI | GKGCMC | 3 cut(s) | 778, 1465, 1594 |
| BstUI | CGCG | 7 cut(s) | 307, 414, 441, 443, 958, 1179, 1388 |
| BstV1I | GCAGC | 6 cut(s) | 540, 638, 1060, 1245, 1315, 1614 |
| BstV2I | GAAGAC | 1 cut(s) | 503 |
| BstZI | CGGCCG | 1 cut(s) | 1389 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1364 |
| BtgI | CCRYGG | 3 cut(s) | 963, 1177, 1386 |
| BtrI | CACGTC | 2 cut(s) | 760, 1228 |
| BtsCI | GGATG | 3 cut(s) | 291, 592, 1621 |
| BtsIMutI | CAGTG | 2 cut(s) | 29, 518 |
| BtuMI | TCGCGA | 1 cut(s) | 414 |
| BveI | ACCTGC | 1 cut(s) | 715 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1054 |
| CciI | TCATGA | 1 cut(s) | 882 |
| CciNI | GCGGCCGC | 1 cut(s) | 1389 |
| Cfr10I | RCCGGY | 6 cut(s) | 366, 595, 629, 665, 780, 1537 |
| Cfr42I | CCGCGG | 2 cut(s) | 1180, 1389 |
| Cfr9I | CCCGGG | 1 cut(s) | 1699 |
| CseI | GACGC | 6 cut(s) | 199, 425, 508, 1029, 1181, 1506 |
| Csp6I | GTAC | 3 cut(s) | 97, 472, 1380 |
| CspAI | ACCGGT | 1 cut(s) | 366 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 952, 987 |
| CviAII | CATG | 4 cut(s) | 469, 883, 1027, 1480 |
| CviQI | GTAC | 3 cut(s) | 97, 472, 1380 |
| DdeI | CTNAG | 7 cut(s) | 134, 156, 527, 1070, 1329, 1364, 1597 |
| DinI | GGCGCC | 2 cut(s) | 837, 1498 |
| DpnI | GATC | 3 cut(s) | 164, 318, 770 |
| DpnII | GATC | 3 cut(s) | 162, 316, 768 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1633 |
| DriI | GACNNNNNGTC | 1 cut(s) | 184 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1633 |
| EaeI | YGGCCR | 4 cut(s) | 1146, 1194, 1389, 1539 |
| EagI | CGGCCG | 1 cut(s) | 1389 |
| Eam1104I | CTCTTC | 1 cut(s) | 914 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 184 |
| EarI | CTCTTC | 1 cut(s) | 914 |
| EciI | GGCGGA | 7 cut(s) | 83, 347, 648, 1121, 1169, 1303, 1436 |
| Ecl136II | GAGCTC | 1 cut(s) | 1069 |
| EclXI | CGGCCG | 1 cut(s) | 1389 |
| Eco130I | CCWWGG | 4 cut(s) | 651, 1084, 1149, 1278 |
| Eco24I | GRGCYC | 3 cut(s) | 778, 1071, 1465 |
| Eco31I | GGTCTC | 2 cut(s) | 1094, 1713 |
| Eco47I | GGWCC | 4 cut(s) | 201, 436, 682, 1635 |
| Eco52I | CGGCCG | 1 cut(s) | 1389 |
| Eco53kI | GAGCTC | 1 cut(s) | 1069 |
| Eco57I | CTGAAG | 3 cut(s) | 970, 1392, 1505 |
| Eco81I | CCTNAGG | 1 cut(s) | 1364 |
| Eco88I | CYCGRG | 2 cut(s) | 512, 1699 |
| Eco91I | GGTNACC | 1 cut(s) | 1354 |
| EcoICRI | GAGCTC | 1 cut(s) | 1069 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1058, 1259 |
| EcoO109I | RGGNCCY | 4 cut(s) | 201, 774, 1461, 1635 |
| EcoO65I | GGTNACC | 1 cut(s) | 1354 |
| EcoRII | CCWGG | 4 cut(s) | 239, 1053, 1341, 1684 |
| EcoT14I | CCWWGG | 4 cut(s) | 651, 1084, 1149, 1278 |
| EcoT38I | GRGCYC | 3 cut(s) | 778, 1071, 1465 |
| EgeI | GGCGCC | 2 cut(s) | 837, 1498 |
| EheI | GGCGCC | 2 cut(s) | 837, 1498 |
| ErhI | CCWWGG | 4 cut(s) | 651, 1084, 1149, 1278 |
| Esp3I | CGTCTC | 1 cut(s) | 1234 |
| FaeI | CATG | 4 cut(s) | 472, 886, 1030, 1483 |
| FaqI | GGGAC | 4 cut(s) | 214, 1029, 1220, 1621 |
| FatI | CATG | 4 cut(s) | 468, 882, 1026, 1479 |
| FokI | GGATG | 3 cut(s) | 278, 599, 1608 |
| FriOI | GRGCYC | 3 cut(s) | 778, 1071, 1465 |
| FspBI | CTAG | 3 cut(s) | 929, 944, 1726 |
| GsaI | CCCAGC | 2 cut(s) | 1461, 1642 |
| GsuI | CTGGAG | 4 cut(s) | 482, 728, 1076, 1364 |
| HaeII | RGCGCY | 7 cut(s) | 109, 155, 527, 707, 839, 1342, 1500 |
| HgaI | GACGC | 6 cut(s) | 199, 425, 508, 1029, 1181, 1506 |
| Hin1I | GRCGYC | 3 cut(s) | 836, 1173, 1497 |
| Hin1II | CATG | 4 cut(s) | 472, 886, 1030, 1483 |
| HincII | GTYRAC | 1 cut(s) | 730 |
| HindII | GTYRAC | 1 cut(s) | 730 |
| HinfI | GANTC | 7 cut(s) | 169, 179, 731, 857, 1310, 1445, 1681 |
| HphI | GGTGA | 6 cut(s) | 517, 593, 778, 905, 1345, 1361 |
| Hpy166II | GTNNAC | 4 cut(s) | 97, 130, 508, 730 |
| Hpy188I | TCNGA | 8 cut(s) | 280, 296, 321, 357, 364, 538, 1626, 1666 |
| Hpy188III | TCNNGA | 6 cut(s) | 166, 413, 461, 737, 883, 1093 |
| Hpy8I | GTNNAC | 4 cut(s) | 97, 130, 508, 730 |
| Hpy99I | CGWCG | 6 cut(s) | 215, 419, 723, 1175, 1630, 1666 |
| HpyCH4III | ACNGT | 4 cut(s) | 33, 64, 641, 817 |
| HpyCH4IV | ACGT | 5 cut(s) | 99, 718, 759, 1191, 1227 |
| HpyCH4V | TGCA | 5 cut(s) | 117, 626, 1021, 1261, 1303 |
| HpyF3I | CTNAG | 7 cut(s) | 134, 156, 527, 1070, 1329, 1364, 1597 |
| HpySE526I | ACGT | 5 cut(s) | 99, 718, 759, 1191, 1227 |
| Hsp92I | GRCGYC | 3 cut(s) | 836, 1173, 1497 |
| Hsp92II | CATG | 4 cut(s) | 472, 886, 1030, 1483 |
| KasI | GGCGCC | 2 cut(s) | 835, 1496 |
| KflI | GGGWCCC | 1 cut(s) | 1635 |
| KroI | GCCGGC | 4 cut(s) | 595, 629, 780, 1537 |
| KroNI | GCCGGC | 4 cut(s) | 597, 631, 782, 1539 |
| KspI | CCGCGG | 2 cut(s) | 1180, 1389 |
| Kzo9I | GATC | 3 cut(s) | 162, 316, 768 |
| LmnI | GCTCC | 3 cut(s) | 149, 659, 1066 |
| Lsp1109I | GCAGC | 6 cut(s) | 540, 638, 1060, 1245, 1315, 1614 |
| LweI | GCATC | 1 cut(s) | 1519 |
| MaeI | CTAG | 3 cut(s) | 929, 944, 1726 |
| MaeII | ACGT | 5 cut(s) | 99, 718, 759, 1191, 1227 |
| MaeIII | GTNAC | 5 cut(s) | 376, 674, 1160, 1354, 1518 |
| MalI | GATC | 3 cut(s) | 164, 318, 770 |
| MbiI | CCGCTC | 4 cut(s) | 898, 1138, 1204, 1596 |
| MboI | GATC | 3 cut(s) | 162, 316, 768 |
| MboII | GAAGA | 4 cut(s) | 508, 758, 799, 901 |
| MfeI | CAATTG | 1 cut(s) | 969 |
| MhlI | GDGCHC | 4 cut(s) | 778, 1071, 1465, 1594 |
| MlsI | TGGCCA | 2 cut(s) | 1148, 1196 |
| MluCI | AATT | 2 cut(s) | 341, 969 |
| MluNI | TGGCCA | 2 cut(s) | 1148, 1196 |
| Mly113I | GGCGCC | 2 cut(s) | 836, 1497 |
| MlyI | GAGTC | 5 cut(s) | 173, 725, 851, 1319, 1454 |
| MmeI | TCCRAC | 5 cut(s) | 258, 310, 380, 1644, 1649 |
| Mox20I | TGGCCA | 2 cut(s) | 1148, 1196 |
| MroNI | GCCGGC | 4 cut(s) | 595, 629, 780, 1537 |
| MroXI | GAANNNNTTC | 1 cut(s) | 75 |
| MscI | TGGCCA | 2 cut(s) | 1148, 1196 |
| MseI | TTAA | 3 cut(s) | 267, 273, 1428 |
| MslI | CAYNNNNRTG | 5 cut(s) | 84, 579, 1031, 1298, 1478 |
| Msp20I | TGGCCA | 2 cut(s) | 1148, 1196 |
| MspA1I | CMGCKG | 6 cut(s) | 392, 1179, 1306, 1388, 1397, 1605 |
| MspR9I | CCNGG | 8 cut(s) | 46, 241, 691, 1055, 1343, 1686, 1700, 1701 |
| MunI | CAATTG | 1 cut(s) | 969 |
| Mva1269I | GAATGC | 1 cut(s) | 1406 |
| MvaI | CCWGG | 4 cut(s) | 241, 1055, 1343, 1686 |
| MvnI | CGCG | 7 cut(s) | 307, 414, 441, 443, 958, 1179, 1388 |
| NaeI | GCCGGC | 4 cut(s) | 597, 631, 782, 1539 |
| NarI | GGCGCC | 2 cut(s) | 836, 1497 |
| NciI | CCSGG | 4 cut(s) | 46, 691, 1700, 1701 |
| NdeII | GATC | 3 cut(s) | 162, 316, 768 |
| NgoMIV | GCCGGC | 4 cut(s) | 595, 629, 780, 1537 |
| NlaIII | CATG | 4 cut(s) | 472, 886, 1030, 1483 |
| NmeAIII | GCCGAG | 5 cut(s) | 134, 502, 892, 971, 1559 |
| NmuCI | GTSAC | 3 cut(s) | 674, 1160, 1518 |
| NotI | GCGGCCGC | 1 cut(s) | 1389 |
| NruI | TCGCGA | 1 cut(s) | 414 |
| NspI | RCATGY | 2 cut(s) | 1030, 1483 |
| PagI | TCATGA | 1 cut(s) | 882 |
| PciI | ACATGT | 1 cut(s) | 1026 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1029, 1197, 1670 |
| PctI | GAATGC | 1 cut(s) | 1406 |
| PdiI | GCCGGC | 4 cut(s) | 597, 631, 782, 1539 |
| PdmI | GAANNNNTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 2 cut(s) | 169, 1681 |
| PinAI | ACCGGT | 1 cut(s) | 366 |
| PleI | GAGTC | 5 cut(s) | 173, 725, 851, 1318, 1453 |
| PluTI | GGCGCC | 2 cut(s) | 839, 1500 |
| PpsI | GAGTC | 5 cut(s) | 173, 725, 851, 1318, 1453 |
| Ppu21I | YACGTR | 1 cut(s) | 100 |
| PpuMI | RGGWCCY | 2 cut(s) | 201, 1635 |
| PscI | ACATGT | 1 cut(s) | 1026 |
| Psp124BI | GAGCTC | 1 cut(s) | 1071 |
| Psp5II | RGGWCCY | 2 cut(s) | 201, 1635 |
| Psp6I | CCWGG | 4 cut(s) | 239, 1053, 1341, 1684 |
| PspEI | GGTNACC | 1 cut(s) | 1354 |
| PspFI | CCCAGC | 2 cut(s) | 1457, 1638 |
| PspGI | CCWGG | 4 cut(s) | 239, 1053, 1341, 1684 |
| PspOMI | GGGCCC | 2 cut(s) | 774, 1461 |
| PspPPI | RGGWCCY | 2 cut(s) | 201, 1635 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 863, 895 |
| PstI | CTGCAG | 1 cut(s) | 1263 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1054 |
| RruI | TCGCGA | 1 cut(s) | 414 |
| RsaI | GTAC | 3 cut(s) | 98, 473, 1381 |
| RsaNI | GTAC | 3 cut(s) | 97, 472, 1380 |
| RseI | CAYNNNNRTG | 5 cut(s) | 84, 579, 1031, 1298, 1478 |
| SacI | GAGCTC | 1 cut(s) | 1071 |
| SacII | CCGCGG | 2 cut(s) | 1180, 1389 |
| SaqAI | TTAA | 3 cut(s) | 267, 273, 1428 |
| Sau3AI | GATC | 3 cut(s) | 162, 316, 768 |
| ScaI | AGTACT | 1 cut(s) | 1381 |
| SchI | GAGTC | 5 cut(s) | 173, 725, 851, 1319, 1454 |
| ScrFI | CCNGG | 8 cut(s) | 46, 241, 691, 1055, 1343, 1686, 1700, 1701 |
| SduI | GDGCHC | 4 cut(s) | 778, 1071, 1465, 1594 |
| SfaNI | GCATC | 1 cut(s) | 1519 |
| SfcI | CTRYAG | 1 cut(s) | 1259 |
| SfoI | GGCGCC | 2 cut(s) | 837, 1498 |
| Sfr303I | CCGCGG | 2 cut(s) | 1180, 1389 |
| SgrBI | CCGCGG | 2 cut(s) | 1180, 1389 |
| SinI | GGWCC | 4 cut(s) | 201, 436, 682, 1635 |
| SmaI | CCCGGG | 1 cut(s) | 1701 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 84, 579, 1031, 1298, 1478 |
| Sse9I | AATT | 2 cut(s) | 341, 969 |
| SspDI | GGCGCC | 2 cut(s) | 835, 1496 |
| SspMI | CTAG | 3 cut(s) | 929, 944, 1726 |
| SstI | GAGCTC | 1 cut(s) | 1071 |
| StyD4I | CCNGG | 8 cut(s) | 44, 239, 689, 1053, 1341, 1684, 1698, 1699 |
| StyI | CCWWGG | 4 cut(s) | 651, 1084, 1149, 1278 |
| TaaI | ACNGT | 4 cut(s) | 33, 64, 641, 817 |
| TaiI | ACGT | 5 cut(s) | 102, 721, 762, 1194, 1230 |
| TaqI | TCGA | 6 cut(s) | 165, 245, 385, 1059, 1200, 1503 |
| TasI | AATT | 2 cut(s) | 341, 969 |
| TatI | WGTACW | 1 cut(s) | 1379 |
| TfiI | GAWTC | 2 cut(s) | 169, 1681 |
| Tru1I | TTAA | 3 cut(s) | 267, 273, 1428 |
| Tru9I | TTAA | 3 cut(s) | 267, 273, 1428 |
| TscAI | CASTG | 2 cut(s) | 36, 525 |
| TseFI | GTSAC | 3 cut(s) | 674, 1160, 1518 |
| TseI | GCWGC | 6 cut(s) | 553, 626, 1048, 1258, 1303, 1602 |
| Tsp45I | GTSAC | 3 cut(s) | 674, 1160, 1518 |
| TspDTI | ATGAA | 3 cut(s) | 38, 871, 1236 |
| TspGWI | ACGGA | 2 cut(s) | 795, 1643 |
| TspMI | CCCGGG | 1 cut(s) | 1699 |
| TspRI | CASTG | 2 cut(s) | 36, 525 |
| VpaK11BI | GGWCC | 4 cut(s) | 201, 436, 682, 1635 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1058, 1259 |
| XceI | RCATGY | 2 cut(s) | 1030, 1483 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 575 |
| XmaI | CCCGGG | 1 cut(s) | 1699 |
| XmnI | GAANNNNTTC | 1 cut(s) | 75 |
| XspI | CTAG | 3 cut(s) | 929, 944, 1726 |
| ZrmI | AGTACT | 1 cut(s) | 1381 |